genome.fa.s7.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  60  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12573608--12573651	19	2.3	19	92	0	70	63	0	6	29	1.20
12578652--12578689	2	19.0	2	100	0	76	50	0	0	50	1.00
12590100--12590153	15	3.3	15	74	18	54	44	1	0	53	1.11
12590186--12590222	16	2.3	16	86	13	58	40	0	0	59	0.97
12598348--12598383	19	1.9	19	88	5	56	8	13	2	75	1.15
12606186--12606219	16	2.2	15	89	5	50	2	26	0	70	1.01
12609509--12609589	15	5.5	15	73	11	60	32	9	16	41	1.81
12622768--12622811	3	14.7	3	100	0	88	31	0	34	34	1.58
12629057--12629138	32	2.6	32	79	9	80	39	1	7	52	1.37
12632989--12633026	19	2.1	18	95	5	67	36	7	5	50	1.54
12633325--12633372	2	24.0	2	91	0	78	45	0	4	50	1.21
12633634--12633686	23	2.3	23	90	0	79	45	9	15	30	1.77
12634647--12634794	66	2.2	66	86	2	208	17	22	15	44	1.86
12635703--12636191	18	30.1	18	69	19	310	45	3	0	50	1.22
12635712--12636210	30	15.6	31	68	13	226	46	3	0	49	1.22
12635694--12636175	48	10.0	48	94	0	811	46	3	0	50	1.22
12635691--12636209	8	57.3	9	64	25	135	46	3	0	49	1.21
12635694--12636175	145	3.3	144	93	1	829	46	3	0	50	1.22
12637722--12637849	44	2.9	43	88	4	184	26	7	51	14	1.69
12637722--12637790	22	3.1	22	66	29	56	26	7	52	14	1.67
12637722--12637866	44	3.3	44	86	1	166	28	7	48	15	1.72
12637856--12637932	25	3.0	25	86	3	109	19	3	46	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12638043--12638396	41	8.4	41	74	13	242	21	27	25	25	2.00
12638025--12638396	83	4.4	84	75	14	282	22	26	26	25	2.00
12638170--12638349	93	1.9	94	82	7	224	19	27	27	25	1.99
12638131--12638389	134	1.9	134	84	4	344	19	27	28	25	1.99
12641855--12642220	123	3.0	122	91	0	597	42	8	10	38	1.70
12650291--12650315	2	12.5	2	100	0	50	52	0	0	48	1.00
12650984--12651104	60	2.0	60	82	3	145	23	14	12	49	1.77
12651306--12651381	31	2.5	30	85	4	107	47	10	13	28	1.76
12651266--12651430	90	1.9	89	82	5	208	48	10	13	26	1.76
12656086--12656147	29	2.1	29	87	0	88	19	35	25	19	1.95
12658127--12658161	17	2.1	17	100	0	70	45	5	31	17	1.71
12658491--12658529	2	21.0	2	85	15	57	53	0	0	46	1.00
12659806--12659859	26	2.1	26	92	0	90	31	20	18	29	1.96
12659813--12659871	26	2.3	26	84	0	73	32	18	16	32	1.94
12660902--12660946	17	2.6	17	89	3	63	46	13	20	20	1.83
12680894--12680939	23	2.0	23	100	0	92	47	0	21	30	1.51
12685374--12685698	160	2.0	161	93	3	562	28	16	13	41	1.86
12686725--12686763	18	2.2	18	95	0	69	23	10	28	38	1.87
12688157--12688236	38	2.1	39	90	2	126	47	1	0	51	1.08
12688159--12688226	21	3.5	20	68	15	61	47	1	0	51	1.09
12695137--12695261	23	5.5	22	80	6	110	39	24	23	12	1.90
12695133--12695328	46	4.3	46	75	13	131	40	22	23	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12695201--12695317	23	5.0	23	75	17	91	41	21	23	12	1.88
12704856--12704899	15	2.9	15	80	6	54	31	0	2	65	1.05
12708618--12708689	31	2.4	31	85	2	92	19	19	15	45	1.85
12720866--12720925	21	2.9	21	82	0	66	35	13	25	26	1.93
12722835--12722908	21	3.5	21	83	0	94	24	14	24	36	1.93
12724361--12724407	24	2.0	24	87	8	69	31	17	19	31	1.94
12724481--12724528	21	2.3	21	88	0	69	22	16	18	41	1.90
12724496--12724545	21	2.4	20	83	9	64	28	22	16	34	1.95
12732831--12732967	34	3.9	34	66	16	89	32	24	20	21	1.97
12735892--12736126	96	2.4	96	97	0	434	31	8	20	39	1.82
12743064--12743094	7	4.4	7	100	0	62	41	45	0	12	1.42
12751342--12751385	17	2.6	17	82	10	56	13	15	13	56	1.67
12761979--12762016	19	2.0	20	89	5	60	36	23	13	26	1.91
12762305--12762389	42	2.0	42	100	0	170	18	21	12	47	1.82
12763623--12763865	84	3.0	82	77	9	187	43	10	11	34	1.75
12765167--12765256	39	2.3	39	98	0	171	27	15	32	24	1.95
12766260--12766313	26	2.0	27	82	10	67	38	5	7	48	1.55
12767369--12767412	20	2.1	21	87	4	63	47	2	22	27	1.63
12769589--12769689	45	2.2	45	98	0	193	35	16	14	32	1.90
12776922--12777014	26	3.6	25	82	5	114	30	7	24	37	1.83
12777001--12777101	26	3.9	26	82	1	132	26	16	26	29	1.97
12776923--12777100	52	3.4	52	82	2	180	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12777209--12777242	15	2.3	15	89	0	50	20	0	2	76	0.92
12777218--12777242	5	5.0	5	100	0	50	20	0	0	80	0.72
12784253--12784297	23	2.0	23	86	0	63	40	20	15	24	1.91
12784254--12784303	23	2.2	23	81	0	55	44	20	12	24	1.85
12786075--12786137	28	2.2	28	80	5	74	71	0	14	14	1.15
12787772--12788074	158	1.9	158	83	4	371	22	25	23	28	1.99
12788015--12788117	43	2.4	43	93	0	179	23	33	22	21	1.98
12790930--12790974	20	2.3	20	81	11	58	46	0	2	51	1.13
12795479--12795529	19	2.6	20	77	22	63	64	3	0	31	1.11
12795480--12795530	10	5.2	10	73	21	54	66	3	0	29	1.09
12797325--12797381	20	2.8	20	74	10	62	57	0	1	40	1.09
12797614--12797642	12	2.3	13	94	5	51	62	0	0	37	0.96
12809864--12809888	11	2.3	11	100	0	50	32	0	0	68	0.90
12809893--12809927	17	2.1	17	89	5	54	80	5	2	11	1.00
12810590--12810777	101	1.9	101	89	2	297	28	20	17	34	1.95
12811244--12811406	49	3.3	49	82	5	177	24	25	13	36	1.92
12813724--12813782	7	8.0	7	78	17	57	0	20	0	79	0.73
12813724--12813780	4	15.2	4	76	23	54	0	21	0	78	0.74
12813724--12813780	9	5.5	11	78	19	52	0	21	0	78	0.74
12813724--12813782	11	5.6	11	78	13	63	0	20	0	79	0.73
12817837--12817879	19	2.3	19	87	0	59	67	6	2	23	1.27
12819008--12819042	17	2.1	17	89	5	54	80	2	2	14	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12819422--12819462	17	2.3	18	88	12	59	26	2	0	70	0.99
12819732--12819768	11	3.2	11	88	11	56	70	0	0	29	0.88
12819904--12819942	13	3.1	12	85	10	51	30	2	0	66	1.05
12820192--12820234	19	2.3	18	84	4	59	58	2	2	37	1.24
12826447--12826489	22	2.0	23	86	9	63	32	4	2	60	1.30
12826467--12826639	58	2.9	58	84	5	224	43	1	1	53	1.18
12826794--12826865	16	4.5	16	84	3	92	30	27	4	37	1.76
12826794--12826865	32	2.2	32	90	4	110	30	27	4	37	1.76
12828100--12828158	18	3.2	19	88	7	70	52	3	0	44	1.17
12828110--12828158	18	2.7	18	93	6	82	55	4	0	40	1.19
12829276--12829335	31	1.9	32	89	3	95	50	10	6	33	1.62
12829451--12829477	12	2.2	12	100	0	54	51	7	7	33	1.58
12830131--12830172	22	1.9	21	85	9	57	28	0	7	64	1.20
12830461--12830506	23	2.0	23	91	0	74	39	6	8	45	1.61
12833449--12833487	20	2.0	18	85	14	51	53	2	0	43	1.14
12837158--12837292	51	2.6	51	80	12	136	54	6	1	37	1.36
12838906--12838944	15	2.6	16	84	12	55	17	20	7	53	1.68
12841290--12841469	51	3.5	50	76	7	148	31	23	13	31	1.93
12843403--12843457	24	2.3	23	79	14	58	40	5	16	38	1.72
12845111--12845194	42	2.0	42	97	0	159	32	20	16	30	1.95
12847595--12847643	6	8.0	6	93	4	80	63	0	0	36	0.95
12847765--12847808	5	8.4	5	82	7	52	72	2	2	22	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12848828--12848886	13	4.7	12	87	6	73	45	16	18	18	1.85
12848828--12848886	19	3.1	18	85	4	73	45	16	18	18	1.85
12848828--12848892	32	2.0	32	96	0	121	43	18	20	18	1.89
12848904--12848953	23	2.2	23	88	0	73	20	16	36	28	1.93
12850165--12850205	22	1.9	22	90	5	66	34	2	21	41	1.67
12852955--12852995	13	3.5	12	80	16	50	70	0	0	29	0.87
12852945--12853003	22	2.7	23	79	12	70	67	0	0	32	0.91
12861322--12861628	168	1.8	168	85	8	433	38	0	39	22	1.55
12861587--12861645	29	2.0	29	83	0	73	45	0	33	20	1.51
12875888--12875927	21	1.9	21	94	0	71	20	15	2	62	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144