genome.fa.s7.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  139  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36344566--36344637	37	1.9	37	83	5	92	56	4	4	34	1.37
36346018--36346093	35	2.2	35	87	0	107	32	10	7	48	1.66
36348054--36348089	8	4.5	8	92	0	54	44	0	55	0	0.99
36348049--36348089	16	2.5	16	84	4	55	43	2	53	0	1.13
36349599--36349634	6	6.0	6	100	0	72	33	16	50	0	1.46
36355464--36355507	22	2.0	23	86	8	65	70	0	0	29	0.88
36357844--36357868	12	2.1	12	100	0	50	32	12	32	24	1.91
36364665--36364716	26	2.0	26	100	0	104	34	3	30	30	1.76
36369439--36369464	3	8.7	3	100	0	52	34	30	34	0	1.58
36371076--36371145	26	2.7	26	86	6	79	52	0	4	42	1.20
36371076--36371145	27	2.7	26	86	6	88	52	0	4	42	1.20
36371322--36371371	16	3.2	16	73	21	61	60	4	0	36	1.16
36372753--36372896	23	6.3	23	83	3	150	42	21	23	12	1.87
36372753--36372895	46	3.2	46	86	4	184	42	20	23	12	1.87
36374932--36374997	31	2.3	30	82	15	77	33	9	13	43	1.76
36376304--36376383	40	2.0	40	100	0	160	32	17	10	40	1.83
36388383--36388415	17	1.9	17	93	0	57	21	3	0	75	0.93
36394206--36394248	21	2.0	22	90	4	70	53	0	11	34	1.37
36397717--36397775	30	2.0	30	100	0	118	33	20	18	27	1.96
36397853--36397922	36	1.9	36	97	0	131	41	12	14	31	1.83
36401027--36401065	14	2.8	14	92	0	60	35	20	5	38	1.75
36404802--36404958	61	2.6	59	71	14	147	26	11	7	54	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36410980--36411034	16	3.4	16	84	0	65	36	7	27	29	1.84
36411017--36411109	45	2.1	44	84	9	118	30	4	26	38	1.76
36416290--36416315	12	2.2	12	100	0	52	11	15	7	65	1.46
36423136--36423169	7	4.9	7	100	0	68	29	14	29	26	1.95
36423949--36424032	8	9.9	8	69	16	53	30	1	1	66	1.07
36423954--36424032	18	4.6	17	80	13	81	30	1	1	67	1.07
36423951--36424032	9	9.4	9	67	19	50	31	1	1	65	1.08
36424623--36424949	169	2.0	157	87	9	473	43	10	7	39	1.66
36435189--36435225	16	2.2	17	90	9	58	56	0	0	43	0.99
36437097--36437233	74	1.9	73	84	7	188	49	9	17	23	1.75
36443075--36443155	31	2.8	29	82	14	98	34	3	4	56	1.38
36459966--36459999	2	17.0	2	87	0	50	47	5	0	47	1.26
36470176--36470262	10	9.2	9	68	18	52	72	2	0	25	0.96
36470167--36470250	31	2.9	29	79	11	75	69	2	0	28	1.01
36470178--36470221	19	2.4	18	85	14	63	72	2	0	25	0.96
36470179--36470261	39	2.2	37	82	8	105	73	2	0	24	0.95
36470169--36470250	30	2.8	28	80	12	83	70	2	0	26	0.99
36470199--36470263	31	2.1	32	83	13	82	73	1	0	24	0.91
36470412--36470450	20	2.0	20	89	0	60	25	0	2	71	0.98
36475374--36475481	33	3.3	34	75	14	100	55	3	0	40	1.17
36475732--36475785	20	2.8	19	78	10	56	22	16	5	55	1.62
36484477--36484515	20	1.9	21	84	5	53	48	20	7	23	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36486918--36486962	20	2.3	20	81	7	58	53	6	0	40	1.27
36495467--36495525	21	2.7	22	78	5	57	47	5	0	47	1.24
36501227--36501612	123	3.1	123	89	1	553	25	28	16	29	1.97
36503891--36503953	3	21.0	3	100	0	126	33	0	0	66	0.92
36506615--36506869	23	11.2	22	75	18	204	12	24	21	40	1.88
36506615--36506869	48	5.6	46	74	18	169	12	24	21	40	1.88
36506677--36506751	39	1.9	39	91	0	123	12	22	21	44	1.85
36506658--36506846	62	2.9	62	74	17	175	12	25	21	40	1.88
36506711--36506850	70	2.0	68	82	12	167	12	25	20	41	1.87
36506834--36506908	39	1.9	39	91	0	123	12	22	21	44	1.85
36506868--36506961	23	4.0	23	75	16	86	11	25	19	43	1.84
36506639--36506961	157	2.1	157	100	0	646	12	25	20	41	1.87
36507764--36508205	123	3.6	123	93	0	751	26	28	16	28	1.97
36515786--36515829	19	2.3	19	80	11	54	45	0	2	52	1.13
36516273--36516311	19	2.2	17	90	9	60	58	0	2	38	1.12
36517349--36517389	20	2.0	20	85	9	55	34	0	9	56	1.32
36520639--36520692	17	3.2	17	76	12	58	27	1	3	66	1.19
36521207--36521249	22	2.0	22	86	9	61	44	20	0	34	1.52
36528772--36528797	9	2.9	9	100	0	52	34	11	11	42	1.77
36531870--36531894	12	2.1	12	100	0	50	68	0	16	16	1.22
36531970--36532024	21	2.5	22	82	8	60	52	0	14	32	1.42
36532659--36532694	18	2.0	18	88	0	54	30	2	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36540230--36540267	20	1.9	20	94	0	67	34	5	15	44	1.69
36544237--36544291	28	2.0	28	85	7	76	52	1	5	40	1.35
36548587--36548627	21	2.0	21	90	0	64	36	12	7	43	1.70
36549925--36549976	11	5.4	9	78	17	52	21	5	0	73	1.04
36549943--36549976	13	2.5	13	90	4	50	20	2	0	76	0.92
36550634--36550663	6	5.0	6	100	0	60	33	33	0	33	1.58
36557863--36557958	17	5.6	17	70	21	51	63	1	2	33	1.13
36557832--36557985	51	3.1	48	78	16	172	61	1	1	35	1.19
36559281--36559322	22	1.9	22	90	0	66	52	23	4	19	1.65
36561364--36561405	22	1.9	22	85	0	57	69	9	7	14	1.37
36562079--36562124	16	2.9	16	90	0	65	43	0	21	34	1.53
36562103--36562192	45	2.0	45	85	10	123	32	1	23	43	1.61
36562275--36562326	23	2.1	24	86	13	70	53	0	0	46	1.00
36562513--36562666	83	1.9	82	87	4	231	29	20	5	44	1.73
36563571--36563606	18	2.0	18	100	0	72	38	22	16	22	1.93
36564258--36564288	2	15.5	2	100	0	62	0	48	0	51	1.00
36570494--36570544	25	2.0	26	88	3	77	47	1	3	47	1.32
36578538--36578572	16	2.2	16	89	0	52	37	11	2	48	1.54
36587728--36587791	20	3.2	20	84	8	87	35	1	3	59	1.23
36591548--36591583	18	2.0	18	94	0	63	19	16	19	44	1.87
36593772--36593806	16	2.2	16	90	5	54	54	0	2	42	1.15
36593790--36593891	31	3.3	30	74	10	82	47	6	2	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36599993--36600049	20	2.9	19	78	17	62	36	1	3	57	1.26
36601604--36601632	2	14.5	2	100	0	58	51	0	0	48	1.00
36601633--36601658	2	13.0	2	100	0	52	50	0	50	0	1.00
36601750--36601783	6	5.7	6	100	0	68	35	0	50	14	1.44
36604381--36604407	2	13.5	2	100	0	54	51	0	0	48	1.00
36606450--36606500	23	2.3	22	76	6	59	45	1	0	52	1.12
36608676--36608769	49	1.9	49	97	0	179	47	4	11	36	1.60
36608882--36608911	9	3.4	9	90	9	53	46	0	0	53	1.00
36609708--36609749	19	2.2	19	83	8	50	40	7	4	47	1.52
36609719--36609776	27	2.1	27	83	0	71	44	5	1	48	1.35
36610488--36610558	33	2.2	31	82	14	81	25	35	9	29	1.88
36615475--36615514	21	1.9	21	85	10	55	40	12	2	45	1.56
36616473--36616582	36	3.1	35	80	2	130	30	11	21	36	1.90
36616745--36616773	6	4.8	6	100	0	58	13	17	34	34	1.89
36623373--36623422	16	3.1	16	75	16	50	22	4	20	54	1.61
36636858--36636897	20	2.1	19	95	4	71	42	0	0	57	0.98
36637142--36637175	3	11.3	3	93	0	59	35	0	29	35	1.58
36637616--36637666	22	2.3	22	80	9	59	52	1	1	43	1.23
36637954--36638015	3	21.0	3	96	3	117	66	0	0	33	0.92
36644489--36644533	15	2.9	15	80	3	54	71	0	6	22	1.09
36649999--36650067	36	1.9	36	85	5	95	46	10	28	14	1.77
36665937--36666074	63	2.2	61	83	6	161	37	2	14	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36674750--36674787	3	12.7	3	100	0	76	68	0	0	31	0.90
36677623--36677708	27	2.9	29	76	16	79	59	1	0	39	1.05
36679225--36679249	9	2.8	9	100	0	50	0	24	8	68	1.16
36680511--36680540	3	10.0	3	92	0	51	0	30	0	70	0.88
36688629--36688658	2	15.0	2	100	0	60	50	0	0	50	1.00
36690764--36690824	14	4.6	14	70	17	58	59	0	0	40	0.98
36690763--36690805	23	1.9	22	85	4	59	58	0	0	41	0.98
36690785--36690826	15	3.0	15	80	13	54	66	0	0	33	0.92
36696506--36696557	18	2.9	18	82	0	59	26	21	30	21	1.98
36702039--36702077	17	2.3	17	90	0	60	15	12	25	46	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144