genome.fa.s7.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  83  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18749666--18749702	19	1.9	19	88	0	56	35	0	0	64	0.94
18749570--18749894	161	2.0	161	93	1	553	39	9	6	44	1.64
18749827--18749862	19	1.9	18	88	5	54	30	0	0	69	0.89
18754340--18754393	28	1.9	27	82	14	65	57	5	0	37	1.22
18755408--18755440	16	2.1	16	88	5	50	69	0	0	30	0.88
18757185--18757242	15	3.6	15	74	17	62	51	1	0	46	1.11
18760366--18760392	5	5.4	5	100	0	54	77	0	0	22	0.76
18761754--18761788	3	11.7	3	100	0	70	31	0	0	68	0.90
18764180--18764244	23	2.8	22	79	9	76	47	15	7	29	1.73
18770127--18770234	21	4.9	23	71	20	72	49	1	0	49	1.11
18770131--18770230	33	3.1	33	76	17	95	49	2	0	49	1.12
18775188--18775246	28	2.1	28	84	6	75	35	0	8	55	1.30
18777983--18778141	64	2.5	62	82	10	162	52	6	9	30	1.60
18778549--18778586	6	6.7	6	82	11	53	52	0	0	47	1.00
18778549--18778621	17	4.3	17	80	0	74	52	2	5	39	1.39
18779087--18779487	39	10.3	39	70	11	241	26	19	30	23	1.98
18779057--18779368	78	4.0	77	83	0	354	26	19	30	23	1.98
18779226--18779466	116	2.1	116	85	3	322	24	21	30	23	1.99
18779069--18779407	155	2.2	155	80	5	373	26	20	30	23	1.98
18779381--18779526	39	3.7	39	77	3	150	29	21	26	21	1.99
18779342--18779527	78	2.4	78	88	1	275	27	20	29	22	1.99
18779868--18780245	49	7.7	49	77	4	339	17	31	17	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18779777--18780245	99	4.8	96	75	6	280	18	30	16	34	1.93
18779777--18780245	147	3.2	147	80	4	532	18	30	16	34	1.93
18789013--18789131	64	1.9	63	87	5	177	56	5	7	30	1.51
18789584--18789676	17	5.5	17	76	0	96	52	5	3	38	1.40
18789625--18789674	6	8.7	6	73	8	50	56	4	0	40	1.18
18790520--18790554	18	2.0	18	88	5	54	51	0	0	48	1.00
18793819--18793887	36	1.9	35	97	2	129	23	17	13	46	1.83
18820585--18820638	13	3.9	13	79	16	56	72	7	5	14	1.26
18821556--18821803	102	2.4	101	78	7	245	26	20	17	35	1.94
18823387--18823758	29	12.7	29	69	21	127	33	3	29	32	1.75
18823417--18823790	59	6.4	59	89	1	540	34	2	29	33	1.70
18823438--18823848	118	3.5	115	80	10	408	34	2	28	34	1.71
18823918--18824243	162	2.0	162	92	0	535	42	11	18	26	1.85
18825088--18825122	9	3.9	9	92	0	52	37	0	2	60	1.12
18826461--18826507	13	3.7	12	83	13	58	0	21	0	78	0.75
18826466--18826506	18	2.2	19	87	12	59	0	19	0	80	0.71
18829098--18829269	93	1.9	92	86	3	247	34	15	21	27	1.94
18833680--18833716	15	2.5	15	87	12	51	70	5	5	18	1.27
18835907--18835968	25	2.5	24	75	17	63	40	3	8	48	1.49
18836996--18837050	22	2.4	22	93	6	92	36	12	12	38	1.82
18839091--18839149	17	3.5	17	90	0	82	37	1	1	59	1.18
18839094--18839171	34	2.3	34	84	0	93	34	1	6	57	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18841185--18841292	30	3.7	29	76	14	98	37	21	4	36	1.74
18841219--18841284	29	2.2	30	86	2	89	39	19	6	34	1.77
18846693--18846723	10	3.0	10	95	4	53	87	0	12	0	0.55
18846693--18846722	16	1.9	15	93	6	51	90	0	10	0	0.47
18848048--18848187	49	2.8	49	81	7	149	40	23	25	10	1.86
18848046--18848219	49	3.6	47	76	7	141	39	20	27	13	1.90
18848462--18848594	39	3.4	39	72	8	117	24	29	18	27	1.98
18848462--18848707	78	3.2	78	85	2	334	25	29	17	27	1.97
18848501--18848629	39	3.3	39	71	8	118	25	32	15	26	1.95
18848795--18849592	201	4.0	202	89	2	1158	36	19	21	22	1.95
18849925--18849985	17	3.6	18	75	6	56	31	1	6	60	1.32
18860105--18860189	6	14.8	6	73	9	52	38	2	4	54	1.34
18860086--18860193	17	6.2	17	82	2	117	35	2	3	58	1.30
18860094--18860192	11	8.7	11	71	8	56	36	3	4	56	1.34
18860889--18860932	3	14.7	3	81	9	54	63	0	2	34	1.07
18862021--18862166	30	4.9	30	72	17	101	39	26	2	32	1.68
18862039--18862243	29	6.9	29	75	14	134	38	27	1	32	1.68
18862052--18862233	60	3.0	60	79	10	176	40	28	2	29	1.68
18862138--18862242	28	3.6	28	76	16	88	37	30	1	30	1.68
18862512--18862696	97	1.9	97	87	2	273	29	15	14	40	1.87
18871959--18872018	3	20.3	3	93	3	104	68	0	31	0	0.90
18874165--18874702	209	2.6	209	89	1	810	36	18	23	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18875205--18875311	17	6.2	17	80	1	106	34	2	3	58	1.30
18876007--18876059	3	17.7	3	84	0	70	62	1	3	32	1.24
18877157--18877485	29	11.2	28	71	14	125	36	23	3	36	1.71
18877207--18877544	29	11.6	29	73	10	177	35	23	3	36	1.74
18877177--18877439	59	4.5	58	75	14	220	37	22	3	36	1.72
18877219--18877545	59	5.6	58	75	8	279	34	24	4	37	1.75
18877814--18878004	97	2.0	97	86	4	269	29	16	15	39	1.89
18881173--18881223	24	2.1	24	92	0	84	60	7	7	23	1.50
18882221--18882259	4	9.5	4	83	5	51	74	0	25	0	0.82
18882316--18882387	29	2.5	29	90	4	110	44	6	1	47	1.38
18886241--18886266	6	4.3	6	100	0	52	15	34	34	15	1.89
18891450--18891549	50	2.0	50	100	0	200	32	4	22	42	1.72
18891988--18892030	21	2.0	21	82	8	52	46	0	18	34	1.50
18892538--18892621	29	2.9	29	80	5	98	33	7	25	34	1.83
18892595--18892683	40	2.2	40	89	0	133	47	4	24	23	1.70
18895753--18895791	16	2.4	16	86	0	60	30	38	0	30	1.58
18898588--18898638	24	2.1	24	85	7	68	37	21	11	29	1.89
18898650--18898762	48	2.3	50	84	4	140	35	23	8	31	1.86
18898795--18898927	33	4.0	33	76	5	117	21	45	3	29	1.67
18899852--18899901	16	3.1	16	82	5	57	30	6	20	44	1.75
18899930--18899995	17	3.9	17	78	11	66	25	0	25	48	1.51
18907735--18908295	207	2.8	203	92	2	932	41	8	7	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18908330--18908383	17	3.2	16	75	17	56	1	42	5	50	1.36
18912607--18912632	3	8.7	3	100	0	52	69	0	30	0	0.89
18917975--18918013	17	2.3	17	90	0	60	15	12	25	46	1.81
18922471--18922520	19	2.6	19	87	9	66	76	2	0	22	0.89
18922471--18922528	6	9.2	6	76	10	53	74	3	0	22	0.97
18925890--18925919	15	2.0	15	93	0	51	23	13	6	56	1.60
18929156--18929253	33	3.0	33	74	16	105	39	14	18	27	1.89
18947276--18947455	23	7.8	23	82	0	153	19	14	20	45	1.85
18947276--18947455	69	2.6	69	83	0	207	19	14	20	45	1.85
18947279--18947479	46	4.4	46	81	0	195	17	14	21	46	1.84
18956322--18956361	18	2.2	19	86	4	55	32	7	7	52	1.58
18956331--18956424	43	2.2	43	79	9	104	34	5	7	53	1.52
18956631--18956686	19	2.9	19	84	7	69	60	0	1	37	1.07
18956622--18956685	20	3.2	20	80	12	71	62	1	1	34	1.14
18962748--18962772	2	12.5	2	100	0	50	0	48	0	52	1.00
18966706--18966857	73	2.1	71	91	3	241	52	15	10	21	1.72
18967408--18967468	30	2.0	30	100	0	122	29	9	21	39	1.85
18975504--18975792	53	5.5	53	85	3	372	26	18	23	31	1.97
18975504--18975771	103	2.6	102	85	3	365	27	19	22	30	1.98
18989002--18989037	18	2.1	18	90	10	58	72	2	0	25	0.98
18989002--18989054	16	3.1	18	81	13	58	71	1	0	26	0.96
18989365--18989429	6	11.2	6	74	12	55	50	1	1	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18989372--18989415	17	2.6	17	82	17	56	50	2	2	45	1.27
18991425--18991620	59	3.4	59	84	7	276	33	32	1	32	1.67
18997331--18997381	25	2.1	25	85	10	70	37	3	0	58	1.16
19003291--19003315	3	8.3	3	100	0	50	68	32	0	0	0.90
19013491--19013524	17	2.1	17	89	10	54	67	2	14	14	1.34
19027578--19027647	9	7.3	9	73	20	54	31	0	4	64	1.13
19027578--19027647	20	3.6	19	70	28	58	31	0	4	64	1.13
19028332--19028395	31	2.1	31	87	0	92	29	7	21	40	1.82
19038983--19039008	10	2.6	10	100	0	52	0	26	0	73	0.84
19050562--19050683	63	1.9	63	96	0	226	49	14	21	14	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144