genome.fa.s7.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  72  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15261871--15261942	28	2.7	26	80	18	78	65	0	6	27	1.18
15262286--15262464	9	20.4	9	64	21	62	32	4	0	62	1.19
15262356--15262412	17	3.5	16	79	13	55	31	3	0	64	1.10
15262364--15262412	15	3.1	15	77	16	55	32	2	0	65	1.04
15262416--15262453	16	2.2	17	86	9	51	28	2	0	68	1.03
15262718--15262742	13	1.9	13	100	0	50	52	8	0	40	1.31
15264705--15264742	20	1.9	20	88	0	58	31	7	23	36	1.84
15265184--15265274	30	3.0	30	77	3	76	47	4	5	42	1.46
15265591--15265630	16	2.5	16	91	0	62	27	22	22	27	1.99
15268854--15268908	25	2.2	24	87	3	83	49	5	1	43	1.36
15275285--15275350	29	2.2	30	83	2	80	45	13	10	30	1.77
15276005--15276047	17	2.4	19	85	14	56	48	2	2	46	1.27
15276385--15276436	22	2.4	22	74	3	52	28	1	21	48	1.61
15289623--15289935	128	2.4	128	95	0	554	32	20	18	28	1.96
15290484--15290530	13	3.5	13	82	8	51	17	0	6	76	0.98
15290476--15290515	13	3.1	13	82	10	55	12	2	2	82	0.87
15294476--15294536	31	2.0	31	83	0	77	44	9	8	37	1.68
15304143--15304215	22	3.3	21	84	3	92	27	10	20	41	1.86
15306295--15306332	18	2.1	18	100	0	76	39	5	26	28	1.78
15317796--15317846	24	2.2	24	85	3	68	21	7	13	56	1.62
15325623--15325669	15	2.8	17	81	12	53	59	4	34	2	1.29
15326069--15326106	17	2.2	17	95	0	67	15	13	15	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15336259--15336292	17	2.0	17	94	0	59	23	20	17	38	1.93
15355302--15355505	30	6.8	29	73	9	90	39	4	22	33	1.74
15355292--15355446	30	5.2	29	75	10	116	43	5	20	30	1.73
15355308--15355459	29	5.1	29	76	7	119	42	4	19	32	1.72
15362303--15362344	20	2.1	20	90	0	66	38	23	26	11	1.90
15368109--15368157	26	1.9	25	83	4	62	20	12	8	59	1.58
15373807--15373857	17	3.0	17	85	0	66	13	15	37	33	1.87
15376684--15376792	47	2.3	47	82	0	137	45	22	9	22	1.80
15384804--15384847	20	2.2	20	84	8	54	13	4	13	68	1.36
15386591--15386620	15	1.9	16	93	6	53	66	0	30	3	1.07
15387055--15387094	17	2.4	17	91	0	62	17	22	10	50	1.76
15399012--15399114	4	26.8	4	70	16	67	71	2	3	21	1.15
15400925--15401566	102	6.3	102	81	4	577	27	18	19	35	1.94
15400947--15401525	204	2.9	204	82	5	683	27	17	19	35	1.94
15402127--15402189	19	3.3	19	75	2	63	58	12	11	17	1.62
15402119--15402200	39	2.0	40	86	4	112	53	14	10	20	1.71
15402487--15402528	14	3.0	14	83	16	52	0	28	0	71	0.86
15405504--15405641	50	2.7	50	81	9	154	36	10	15	36	1.83
15405783--15405828	20	2.5	17	78	21	56	47	13	6	32	1.68
15405790--15405828	19	2.0	20	90	10	62	48	15	7	28	1.72
15405824--15405856	17	1.9	17	88	11	50	66	6	0	27	1.15
15406121--15406153	17	1.9	17	88	11	50	66	6	0	27	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15406184--15406228	22	2.0	22	100	0	90	17	13	31	37	1.89
15407157--15407191	12	2.9	12	86	0	52	71	0	8	20	1.11
15413876--15413911	18	2.0	18	94	0	63	25	11	25	38	1.88
15414955--15415736	182	4.3	182	92	0	1224	24	23	23	28	1.99
15415601--15415754	80	1.9	80	86	0	218	24	24	23	27	2.00
15420316--15420356	20	2.0	20	86	9	57	41	0	17	41	1.49
15420763--15420981	51	4.3	51	89	2	314	33	14	23	28	1.94
15424367--15424414	17	2.8	17	74	0	51	50	10	18	20	1.76
15437807--15437873	30	2.2	30	97	0	125	23	11	19	44	1.84
15449679--15449711	11	3.1	11	86	4	50	33	0	12	54	1.37
15450883--15450927	24	1.9	24	86	13	67	60	2	13	24	1.45
15452941--15453010	20	3.3	20	74	14	61	67	1	25	5	1.21
15452963--15453019	31	1.9	28	86	10	78	64	1	29	3	1.20
15467064--15467194	50	2.6	52	81	8	146	36	11	15	36	1.83
15467396--15467428	17	1.9	17	88	11	50	66	6	0	27	1.15
15468759--15468799	21	1.9	22	85	14	59	75	0	19	4	0.98
15479220--15479384	83	2.0	83	93	2	287	34	17	7	40	1.79
15481498--15481553	27	2.0	28	83	10	71	44	17	5	32	1.72
15488356--15488420	33	1.9	34	84	3	87	33	13	9	43	1.76
15488455--15488610	50	3.1	50	79	8	172	36	14	12	36	1.84
15489875--15489928	23	2.3	23	81	15	58	70	5	12	11	1.32
15490806--15490857	21	2.6	21	78	6	54	65	0	25	9	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15490904--15490937	18	1.9	17	88	5	50	64	2	26	5	1.30
15492235--15492267	17	1.9	17	88	11	50	27	0	6	66	1.15
15492474--15492617	50	2.8	50	77	8	148	36	13	11	37	1.82
15501421--15501487	15	4.6	14	76	10	55	20	16	5	56	1.61
15501640--15501694	17	3.2	17	74	5	56	25	9	1	63	1.34
15501686--15501747	2	31.0	2	87	6	90	48	1	1	48	1.21
15512963--15512993	14	2.1	15	94	5	55	77	3	6	12	1.08
15522266--15522307	16	2.7	15	85	7	57	64	2	2	30	1.19
15522275--15522304	15	1.9	16	93	6	53	60	3	3	33	1.30
15524956--15525051	19	5.1	19	92	2	158	36	25	2	36	1.68
15524956--15525051	37	2.6	38	93	1	158	36	25	2	36	1.68
15524958--15525051	11	9.8	10	70	27	71	36	25	2	36	1.68
15525440--15525552	45	2.5	45	85	0	136	25	23	16	34	1.95
15528287--15528328	12	3.5	12	81	12	59	4	16	2	76	1.07
15528279--15528334	24	2.3	24	96	0	103	3	19	5	71	1.21
15533194--15533233	19	2.2	18	95	4	71	12	15	12	60	1.60
15542179--15542213	18	2.1	18	89	10	56	71	2	0	25	1.00
15542477--15542566	19	4.7	19	86	5	110	56	4	0	38	1.19
15542483--15542566	39	2.2	39	85	10	111	53	4	0	41	1.22
15557781--15557897	48	2.4	48	85	2	144	52	13	8	24	1.68
15557814--15557916	48	2.1	47	85	7	136	54	14	8	22	1.67
15558192--15565398	216	33.5	217	82	4	7413	28	16	13	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15558192--15565393	647	11.1	647	81	5	7327	28	16	13	40	1.87
15565397--15575217	216	45.2	213	76	8	6240	40	13	17	28	1.88
15575244--15576069	210	3.9	207	76	9	625	41	14	16	27	1.87
15576176--15577015	433	1.9	433	79	6	925	41	14	15	29	1.86
15576176--15577082	216	4.2	218	76	6	772	41	14	15	29	1.86
15574300--15578036	944	4.0	944	90	2	5537	40	13	16	28	1.87
15577123--15578890	217	8.2	214	76	8	1347	40	13	16	28	1.87
15578930--15581581	216	12.3	214	76	7	2044	40	14	16	28	1.87
15578930--15581582	649	4.1	648	77	7	2264	40	14	16	28	1.87
15577123--15581581	865	5.1	865	76	10	4495	40	14	16	28	1.87
15581580--15582819	216	5.7	216	77	6	1123	40	13	16	28	1.87
15581580--15582819	432	2.9	431	83	4	1439	40	13	16	28	1.87
15582812--15583920	216	5.1	214	79	5	1113	40	14	16	29	1.88
15583444--15584433	513	1.9	515	81	5	1187	40	14	17	28	1.88
15583961--15584870	217	4.2	216	80	6	901	40	13	17	28	1.88
15582038--15585825	950	4.0	947	85	3	4521	40	14	16	28	1.88
15584911--15588646	216	17.4	215	77	5	3146	40	14	16	28	1.88
15584911--15590270	433	12.6	428	77	7	4454	40	14	16	28	1.88
15588648--15590270	216	7.7	215	75	9	1311	41	13	17	27	1.88
15591398--15591540	50	2.8	49	81	9	144	37	13	14	34	1.85
15591730--15591762	17	1.9	17	88	11	50	66	6	0	27	1.15
15595583--15597420	216	8.5	216	84	3	1972	40	13	18	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15597444--15598978	216	7.1	215	86	3	1759	40	13	17	28	1.88
15597444--15598978	431	3.6	427	85	4	1794	40	13	17	28	1.88
15606080--15606108	14	2.1	14	100	0	58	41	6	0	51	1.28
15616550--15616711	60	2.7	59	88	3	227	34	3	29	32	1.75
15616756--15616873	30	3.9	30	87	4	184	36	0	19	43	1.57
15617556--15617606	11	4.5	11	74	13	50	3	19	0	76	0.94
15617558--15617605	17	2.8	16	82	14	60	4	18	0	77	0.93
15618675--15618740	17	3.8	16	78	9	51	54	6	3	36	1.41
15625840--15625878	12	3.2	12	85	0	51	35	5	17	41	1.72
15631433--15631642	48	4.4	48	95	1	368	23	10	14	52	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144