genome.fa.s7.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  74  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16091588--16091683	21	4.7	21	71	7	72	15	16	28	39	1.89
16091658--16091685	13	2.2	13	100	0	56	14	14	21	50	1.78
16097434--16098211	146	5.4	144	85	7	929	45	8	3	42	1.51
16097709--16097743	18	1.9	18	88	0	52	45	8	0	45	1.34
16097738--16097795	30	1.9	30	86	6	82	50	8	5	36	1.56
16097964--16098004	20	2.0	21	85	4	57	46	9	2	41	1.50
16097926--16098100	97	1.8	95	81	8	219	43	8	2	45	1.48
16098062--16098105	20	2.3	19	84	4	52	45	6	2	45	1.42
16098647--16098684	3	12.7	3	100	0	76	68	0	31	0	0.90
16101564--16101641	4	20.5	4	70	17	51	23	1	1	74	0.97
16101556--16101636	27	3.0	27	74	13	78	22	0	2	75	0.92
16101567--16101661	7	13.0	7	69	15	59	22	3	1	73	1.03
16101564--16101635	20	3.5	20	72	22	69	23	0	1	75	0.89
16101564--16101650	18	4.4	18	72	22	68	22	1	1	74	0.95
16101600--16101661	31	2.0	30	84	3	79	19	4	0	75	0.97
16101638--16101696	30	1.9	32	82	6	77	27	8	1	62	1.33
16104327--16104383	24	2.4	24	100	0	114	36	14	21	28	1.92
16113125--16113172	19	2.4	20	86	13	64	16	12	10	60	1.58
16116388--16116423	18	2.1	17	89	5	54	75	0	8	16	1.04
16119207--16119262	21	2.8	20	73	7	51	73	3	5	17	1.17
16125349--16125392	22	2.0	23	86	13	65	45	4	15	34	1.67
16141132--16141173	21	2.0	21	85	0	57	21	28	9	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16142764--16142807	23	2.0	22	86	4	61	38	0	15	45	1.47
16148192--16148238	17	2.8	17	83	0	67	53	14	14	17	1.74
16192619--16192644	12	2.2	12	100	0	52	34	7	23	34	1.83
16202060--16202098	17	2.2	18	90	4	62	61	7	5	25	1.44
16216897--16216933	17	2.1	18	90	5	58	0	27	0	72	0.84
16234184--16234278	46	2.1	46	100	0	190	38	2	18	40	1.63
16234196--16234271	25	3.2	25	61	21	63	42	2	18	36	1.64
16236076--16236116	19	2.2	19	95	0	73	19	17	4	58	1.56
16237063--16237098	17	2.2	17	90	5	56	52	8	8	30	1.61
16238998--16239041	18	2.5	18	92	3	72	61	13	9	15	1.56
16241214--16241266	20	2.6	22	80	19	62	75	1	11	11	1.13
16255374--16255422	19	2.7	17	78	12	53	77	2	14	6	1.05
16257435--16257479	18	2.5	18	85	7	56	55	0	37	6	1.26
16257862--16257906	18	2.5	18	88	0	63	15	11	11	62	1.55
16260502--16260574	35	2.1	36	94	2	130	27	16	12	43	1.83
16261768--16262009	41	5.8	42	69	15	160	37	11	25	26	1.89
16261759--16261905	43	3.5	41	75	10	136	37	12	25	25	1.90
16261759--16261923	84	2.0	84	91	0	267	37	11	25	25	1.89
16289830--16289880	19	2.7	19	84	3	68	17	13	5	62	1.50
16295959--16296011	27	2.0	27	100	0	106	18	33	11	35	1.87
16299683--16299722	18	2.2	18	86	0	53	42	25	17	15	1.88
16315421--16315454	16	2.1	16	100	0	68	50	5	11	32	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16319338--16319382	22	2.0	22	100	0	90	22	31	8	37	1.85
16321897--16321935	6	6.5	6	87	0	51	46	0	30	23	1.53
16325034--16325134	38	2.6	40	71	10	100	21	19	28	29	1.98
16329389--16329427	6	6.5	6	87	0	51	46	0	30	23	1.53
16334723--16334951	43	5.4	43	83	1	171	34	13	24	27	1.93
16334768--16334952	41	4.4	41	83	2	208	34	13	24	27	1.93
16335616--16335690	21	3.6	21	89	3	107	34	10	21	33	1.88
16337017--16337057	20	2.0	20	100	0	82	48	4	0	46	1.23
16348260--16348296	18	2.1	17	90	5	56	35	0	0	64	0.94
16350966--16350999	6	5.7	6	89	0	50	47	14	5	32	1.69
16351960--16352466	29	17.5	29	72	12	154	33	25	8	32	1.87
16351947--16352302	87	4.1	85	74	9	249	33	26	8	32	1.86
16352039--16352198	88	1.8	87	83	4	214	32	21	10	36	1.86
16352163--16352323	87	1.9	87	84	2	216	33	24	9	32	1.87
16351960--16352457	58	8.5	57	70	14	243	33	25	9	31	1.87
16357047--16357142	29	3.3	29	80	9	90	80	2	12	5	0.97
16357055--16357141	32	2.8	31	79	16	83	80	2	12	4	0.96
16357072--16357141	32	2.1	32	87	10	97	82	2	12	1	0.84
16357047--16357142	12	7.5	12	72	17	61	80	2	12	5	0.97
16358266--16358449	51	3.6	51	84	4	228	30	25	13	31	1.93
16360479--16360733	49	5.2	49	71	8	158	32	16	30	19	1.94
16360455--16360633	99	1.8	99	82	2	234	34	15	30	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16360509--16360839	148	2.2	148	85	1	448	33	17	29	19	1.95
16361114--16361376	39	6.7	39	69	10	142	26	29	18	25	1.98
16361114--16361376	78	3.4	78	79	4	246	26	29	18	25	1.98
16361611--16361733	48	2.6	48	93	0	210	34	16	26	22	1.95
16361407--16362065	220	3.1	209	83	7	837	35	17	23	22	1.95
16361924--16362244	123	2.6	120	83	8	364	39	17	21	21	1.92
16364199--16364795	29	20.6	29	71	13	252	34	26	6	32	1.82
16364197--16364795	58	10.3	58	73	9	384	34	26	6	32	1.82
16364197--16364794	87	6.9	86	74	10	387	34	26	6	32	1.82
16365993--16366043	18	2.8	18	93	0	84	52	1	0	45	1.12
16367572--16367736	84	2.0	85	81	5	196	32	14	11	41	1.82
16367608--16367800	81	2.3	83	79	6	203	31	12	11	44	1.78
16369432--16369520	15	5.9	15	68	15	67	28	23	24	23	2.00
16370864--16370905	22	1.9	21	85	9	57	71	4	14	9	1.28
16371403--16374748	773	4.3	773	97	0	6171	31	17	15	35	1.91
16378609--16378806	23	8.6	23	84	4	265	46	13	5	34	1.64
16379267--16379425	36	4.4	36	87	0	219	34	23	10	31	1.88
16385072--16385114	12	3.6	12	87	0	59	2	37	0	60	1.10
16400511--16400556	22	2.1	22	84	8	58	52	0	2	45	1.13
16401837--16401875	5	7.8	5	100	0	78	41	0	0	58	0.98
16402208--16402251	21	2.0	22	87	12	65	68	4	0	27	1.09
16403370--16403427	30	2.0	29	87	12	84	31	0	46	22	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16405653--16405686	14	2.5	14	90	4	52	38	0	0	61	0.96
16406692--16406918	30	7.6	29	80	7	208	34	24	3	37	1.73
16406732--16406968	90	2.6	88	80	8	230	35	23	3	37	1.73
16418895--16418937	22	2.0	22	90	4	70	72	0	0	27	0.85
16418896--16418945	22	2.3	22	86	6	66	72	0	0	28	0.86
16420749--16420923	59	3.0	59	91	0	287	33	1	30	33	1.68
16420757--16420905	30	5.0	30	66	23	91	34	1	30	34	1.66
16420765--16420916	29	5.2	29	68	23	93	32	1	30	34	1.66
16422802--16422896	34	2.8	33	79	7	102	55	4	2	37	1.31
16422819--16422896	17	4.6	17	87	4	104	56	2	2	38	1.27
16422795--16422868	6	12.8	6	76	8	73	55	2	1	40	1.22
16422795--16422868	23	3.2	23	84	0	94	55	2	1	40	1.22
16428706--16428757	21	2.3	23	87	9	72	73	0	19	7	1.07
16428706--16428752	18	2.4	20	86	10	62	72	0	19	8	1.10
16428706--16428771	24	2.9	24	82	6	57	69	1	18	10	1.25
16438228--16438394	60	2.8	59	80	6	156	28	20	10	40	1.85
16438301--16438430	59	2.3	56	84	9	156	28	20	10	41	1.84
16441079--16441132	22	2.4	23	78	9	58	35	7	24	33	1.83
16473766--16473820	21	2.6	21	88	0	74	34	25	18	21	1.96
16474539--16474781	52	4.7	52	83	0	290	34	20	14	30	1.93
16478602--16478826	43	5.2	43	93	0	378	18	31	24	25	1.98
16479139--16479183	21	2.1	21	91	0	72	6	44	17	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16479175--16479321	65	2.2	66	86	3	208	17	23	14	44	1.85
16481131--16481232	8	12.2	8	68	22	59	50	3	0	45	1.20
16481144--16481863	49	14.2	49	80	10	732	45	5	2	46	1.38
16481258--16481798	161	3.5	161	82	8	754	45	5	2	46	1.39
16481113--16481863	258	2.9	252	84	7	853	46	5	2	46	1.38
16481144--16481873	307	2.4	307	95	0	1336	45	5	2	46	1.40
16484211--16484576	41	8.9	41	83	6	343	23	25	23	27	2.00
16484154--16484495	82	4.1	81	80	8	320	23	26	23	26	2.00
16484154--16484495	165	2.1	164	82	11	407	23	26	23	26	2.00
16487916--16487977	30	2.1	31	84	6	83	45	1	3	50	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144