genome.fa.s7.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  113  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26388786--26388815	16	1.9	15	93	6	51	43	3	0	53	1.17
26388878--26388907	15	2.1	14	93	6	51	43	3	0	53	1.17
26390130--26390192	25	2.7	23	81	16	67	53	0	3	42	1.16
26390943--26391057	57	2.0	57	94	0	203	20	26	13	40	1.88
26403100--26403434	60	5.6	60	83	3	397	31	13	20	34	1.91
26403103--26403382	119	2.3	121	84	2	368	33	12	20	34	1.89
26404099--26404151	21	2.5	21	82	11	65	30	15	28	26	1.96
26412533--26412638	6	18.2	6	70	12	78	40	2	2	53	1.30
26412539--26412638	17	5.7	17	78	5	74	40	3	3	54	1.31
26412555--26412638	18	4.4	18	79	16	89	40	3	1	54	1.25
26412567--26412623	24	2.4	24	91	2	89	42	3	0	54	1.17
26414586--26414882	29	10.2	28	71	11	156	35	27	3	32	1.75
26414655--26414876	58	3.8	59	82	4	211	34	25	4	35	1.78
26414717--26414878	59	2.8	58	83	2	189	35	24	6	33	1.81
26419848--26419951	13	8.6	12	72	20	83	78	0	18	1	0.89
26419866--26419969	6	18.3	6	77	13	53	75	1	21	0	0.95
26419858--26419987	33	4.3	31	75	20	107	77	2	18	1	0.95
26419864--26419985	39	3.1	37	82	9	127	77	2	18	1	0.97
26419862--26419987	12	10.3	12	72	14	82	77	2	18	1	0.95
26419863--26419987	45	2.7	46	80	6	137	77	2	18	1	0.96
26419847--26420001	60	2.5	62	80	11	160	76	2	19	1	1.00
26420950--26421518	49	11.5	48	70	9	250	39	16	24	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26420950--26421534	149	3.9	147	74	8	473	39	16	23	19	1.91
26421094--26421518	99	4.3	98	85	6	543	40	17	24	18	1.91
26421917--26422337	78	5.4	77	82	5	314	23	30	20	25	1.99
26421952--26422337	155	2.5	155	82	3	483	23	30	20	25	1.99
26421761--26422331	39	14.7	39	69	5	260	24	29	19	26	1.99
26422911--26422960	6	8.5	6	74	12	50	40	6	0	54	1.25
26422895--26422995	17	5.8	17	72	8	69	37	4	6	50	1.51
26422928--26422976	18	2.8	17	87	6	62	38	6	4	51	1.46
26424879--26425015	29	4.7	29	76	13	111	36	27	2	34	1.69
26424879--26425082	29	6.9	28	74	16	96	34	25	3	37	1.73
26424982--26425141	29	5.4	30	71	16	111	32	21	5	40	1.76
26424879--26425144	59	4.5	59	77	10	172	33	24	4	37	1.76
26425004--26425228	58	3.8	57	79	9	213	31	22	6	39	1.80
26424982--26425227	29	8.4	30	65	18	99	32	22	5	39	1.78
26425124--26425245	58	2.1	58	83	1	147	32	27	6	32	1.83
26427151--26427196	23	2.0	23	83	8	58	60	2	0	36	1.09
26434105--26434173	29	2.3	29	80	2	84	40	2	18	37	1.66
26434156--26434366	29	7.1	28	74	12	147	30	4	27	37	1.77
26435357--26435408	13	3.9	14	75	5	54	38	1	0	59	1.08
26435818--26435878	22	2.8	22	83	11	65	73	3	9	13	1.20
26435844--26435873	15	1.9	16	93	6	53	70	3	13	13	1.30
26436679--26436721	19	2.3	19	84	8	52	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26437283--26437475	105	1.9	102	81	9	239	26	23	12	37	1.90
26437282--26437516	105	2.2	104	77	13	234	26	21	11	41	1.86
26438162--26438221	4	14.5	4	75	19	52	80	0	3	16	0.85
26438162--26438221	13	4.8	12	77	20	52	80	0	3	16	0.85
26438160--26438215	8	6.6	8	80	11	58	80	0	3	16	0.85
26439393--26439432	21	1.9	21	89	0	62	25	17	15	42	1.88
26439400--26439443	21	2.1	21	82	0	52	27	15	15	40	1.88
26443991--26444172	96	1.9	96	82	4	233	28	18	14	38	1.90
26452015--26452458	202	2.2	201	93	1	748	35	20	24	19	1.95
26452790--26452897	17	6.4	17	77	10	87	39	3	4	51	1.40
26453604--26453647	19	2.3	19	80	7	54	56	2	2	38	1.24
26454233--26454314	17	4.5	17	74	15	65	48	1	1	48	1.17
26454285--26454317	11	2.8	12	86	13	50	57	0	0	42	0.98
26456010--26456332	164	2.0	163	90	1	506	26	18	12	42	1.86
26456474--26456612	29	4.7	29	70	21	103	35	28	2	33	1.69
26456415--26456811	59	6.8	59	83	5	450	32	27	3	35	1.74
26456477--26456751	29	9.4	27	63	22	85	33	27	2	36	1.71
26456415--26456811	117	3.4	116	82	7	455	32	27	3	35	1.74
26458430--26458680	29	8.6	29	78	7	197	36	22	4	36	1.74
26458430--26458710	59	4.8	59	76	9	227	37	22	3	36	1.73
26458432--26458710	29	9.5	29	78	9	192	37	22	3	36	1.73
26458432--26458739	58	5.3	57	76	11	216	37	23	3	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26462434--26462481	21	2.2	22	82	14	64	35	2	2	60	1.20
26466827--26466875	23	2.1	23	81	7	55	59	4	2	34	1.28
26472418--26472575	57	2.7	58	79	8	171	36	3	31	28	1.75
26472623--26472728	30	3.5	30	83	7	144	45	2	16	35	1.62
26474552--26474640	17	5.4	17	84	8	103	50	2	0	47	1.13
26474565--26474640	6	13.7	6	75	15	74	50	2	0	47	1.15
26474552--26474640	32	2.7	32	84	3	106	50	2	0	47	1.13
26474565--26474649	17	5.1	17	85	5	66	50	3	1	44	1.26
26475072--26475632	201	2.8	200	88	1	811	22	23	19	34	1.96
26476025--26476460	100	4.4	100	89	2	617	14	25	21	38	1.91
26477642--26477700	18	3.2	18	82	2	73	1	8	10	79	1.00
26477642--26477700	6	9.7	6	81	3	64	1	8	10	79	1.00
26483287--26483386	29	3.4	29	70	16	89	38	4	30	28	1.75
26483270--26483383	58	2.0	57	87	1	165	35	4	31	28	1.77
26483287--26483416	28	4.5	30	71	11	83	40	3	27	28	1.74
26483285--26483416	58	2.3	57	80	6	149	39	3	28	28	1.74
26483404--26483655	60	4.2	59	87	4	319	41	2	19	36	1.66
26483404--26483670	30	8.9	30	77	8	240	40	2	20	36	1.67
26485584--26485652	17	4.0	17	88	3	84	52	2	0	44	1.16
26485583--26485652	6	12.0	6	73	11	65	51	2	0	45	1.16
26485602--26485659	17	3.3	18	92	4	93	55	1	0	43	1.10
26485581--26485648	23	2.9	23	75	14	68	50	2	0	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26490079--26490123	19	2.4	19	81	7	56	37	0	2	60	1.09
26495299--26495343	19	2.4	19	81	7	56	37	0	4	57	1.19
26496147--26496180	16	2.2	16	94	5	61	17	11	0	70	1.16
26511450--26511482	16	2.1	16	88	5	50	6	9	18	66	1.40
26515229--26515271	2	21.5	2	100	0	86	48	0	0	51	1.00
26522852--26522889	5	7.6	5	100	0	76	0	57	0	42	0.98
26523808--26523886	31	2.5	31	83	0	104	54	1	2	41	1.22
26523826--26523906	10	8.4	10	71	23	50	48	2	1	48	1.23
26529167--26529214	18	2.8	17	87	6	69	54	2	2	41	1.24
26529182--26529221	17	2.3	18	86	4	55	57	7	0	35	1.27
26529659--26530540	49	17.8	49	70	11	384	15	24	19	40	1.90
26529653--26530336	99	6.9	98	75	6	368	15	25	20	39	1.91
26529708--26530014	148	2.1	148	92	0	506	16	23	20	40	1.91
26529897--26530490	100	6.0	99	74	9	399	14	25	20	40	1.90
26529653--26530293	248	2.6	248	88	2	914	15	25	20	39	1.91
26529653--26530441	248	3.2	246	84	4	743	15	24	20	40	1.90
26529977--26530605	150	4.2	149	86	3	809	14	25	20	40	1.90
26534258--26534308	13	4.1	13	80	7	61	15	19	37	27	1.92
26534496--26534565	6	12.0	6	78	6	81	54	1	0	44	1.09
26534490--26534571	18	4.4	18	82	13	103	56	1	0	42	1.07
26534490--26534565	40	1.9	40	94	0	134	55	1	0	43	1.08
26538680--26538727	24	2.0	24	83	0	60	52	2	27	18	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26541627--26541687	18	3.4	17	77	8	68	26	36	8	29	1.85
26543594--26543626	11	3.1	11	91	4	50	81	9	3	6	0.95
26544139--26544198	29	2.0	29	83	3	75	30	8	11	50	1.68
26546854--26546912	24	2.5	24	94	0	109	32	27	20	20	1.97
26548777--26549018	52	4.7	52	85	4	308	35	20	13	30	1.91
26552312--26552359	24	2.1	24	81	11	57	41	2	8	47	1.45
26552563--26552607	19	2.4	19	81	7	56	37	0	4	57	1.19
26554587--26554665	31	2.6	30	82	11	90	41	13	10	34	1.79
26555693--26555755	14	4.6	14	71	16	51	0	60	0	39	0.97
26555706--26555809	7	15.4	7	88	6	90	0	52	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144