genome.fa.s7.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  28  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6937843--6938105	29	9.0	29	76	12	202	38	26	3	32	1.72
6937843--6938092	30	8.5	29	74	14	185	38	25	3	32	1.72
6937839--6938162	58	5.5	58	80	8	256	37	26	3	33	1.73
6937971--6938303	29	11.5	29	71	14	172	33	25	6	33	1.81
6937913--6938303	58	6.7	58	78	8	282	34	25	6	34	1.81
6941045--6941191	71	2.1	66	85	12	188	13	23	20	42	1.87
6941021--6941146	23	5.4	24	85	6	145	12	23	21	42	1.87
6945557--6945681	23	5.3	23	88	3	162	13	23	21	41	1.88
6945581--6945727	71	2.1	69	85	12	194	13	23	20	42	1.87
6948478--6948515	20	1.9	20	84	10	51	52	5	2	39	1.38
6949318--6949368	15	3.2	16	78	13	61	54	3	0	41	1.19
6951130--6951180	15	3.2	16	78	13	61	54	3	0	41	1.19
6952941--6952991	15	3.2	16	78	13	61	54	3	0	41	1.19
6954752--6954802	15	3.2	16	78	13	61	54	3	0	41	1.19
6956174--6956249	38	2.0	38	100	0	152	31	15	18	34	1.92
6962555--6962587	17	1.9	17	88	11	50	60	18	15	6	1.54
6966009--6966082	26	2.8	26	81	4	76	55	1	0	43	1.08
6966613--6966638	13	2.0	13	100	0	52	46	0	0	53	1.00
6967528--6967575	22	2.2	22	88	0	69	68	8	8	14	1.37
6968222--6968441	29	7.5	30	78	6	175	37	26	3	32	1.74
6968312--6968645	29	11.5	29	75	8	211	37	28	4	30	1.76
6968222--6968480	58	4.4	58	75	8	220	38	26	3	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6968230--6968624	29	13.5	29	69	14	133	36	28	4	30	1.76
6975838--6976346	50	10.4	50	73	8	366	35	18	30	15	1.92
6975838--6976401	99	5.7	97	78	7	444	35	18	29	15	1.92
6975887--6976368	192	2.5	192	81	4	486	36	18	29	15	1.92
6977374--6977417	21	2.1	21	83	8	54	29	9	6	54	1.58
6978622--6978685	30	2.1	30	94	0	110	37	32	4	25	1.77
6978709--6978911	58	3.5	58	77	8	189	36	24	2	35	1.71
6978622--6978961	29	11.6	28	75	10	157	36	25	3	33	1.73
6978880--6978996	57	2.0	58	81	4	139	38	29	4	27	1.76
6980277--6981086	403	2.0	403	100	0	1620	38	15	18	27	1.91
6981048--6981095	21	2.2	21	85	10	62	41	8	29	20	1.81
6981042--6981095	22	2.5	22	82	8	67	44	9	25	20	1.81
6985006--6985093	23	3.8	23	81	4	97	39	18	12	29	1.87
6985707--6985827	33	3.6	33	80	5	145	41	17	23	17	1.90
6990170--6990283	24	4.8	24	86	0	138	21	23	19	35	1.95
7000523--7000570	20	2.5	19	77	12	53	50	0	4	45	1.21
7000725--7000751	13	2.1	13	100	0	54	62	0	0	37	0.95
7003833--7003912	40	2.1	38	81	11	92	25	27	21	26	1.99
7009085--7009118	11	3.2	11	95	4	61	58	0	17	23	1.38
7015504--7015545	20	2.0	21	86	4	59	33	0	26	40	1.56
7015732--7015792	25	2.4	25	83	8	70	16	32	16	34	1.91
7015756--7015803	25	1.9	25	82	0	60	16	35	12	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7017715--7017756	10	4.2	10	87	9	59	30	0	16	52	1.44
7018921--7018956	18	2.1	17	89	5	54	50	0	0	50	1.00
7025477--7025784	23	13.5	23	73	12	206	40	22	25	12	1.88
7025531--7025605	39	1.9	39	91	0	123	44	21	22	12	1.85
7025570--7025784	48	4.6	46	88	7	317	38	23	26	12	1.89
7025570--7025784	94	2.3	94	97	0	403	38	23	26	12	1.89
7035249--7035382	61	2.3	58	84	7	175	23	8	16	50	1.73
7042236--7042313	29	2.7	29	74	9	77	56	16	2	24	1.53
7044224--7044295	37	1.9	37	91	0	117	22	29	16	31	1.96
7044260--7044370	28	4.0	28	73	11	102	26	26	18	29	1.98
7044263--7044467	56	3.7	55	82	3	250	26	25	16	31	1.96
7048316--7048631	56	5.6	56	76	3	267	30	21	17	30	1.96
7048313--7048469	84	1.9	84	80	12	189	30	22	17	29	1.97
7048313--7048488	28	6.3	28	69	11	92	30	22	17	28	1.97
7048323--7048631	112	2.8	111	81	3	325	30	21	17	30	1.96
7061081--7061309	76	3.0	76	77	1	235	32	22	18	26	1.97
7064599--7064656	21	2.8	20	74	5	62	50	31	0	18	1.48
7065267--7065305	13	3.1	13	85	3	53	74	0	0	25	0.82
7065267--7065304	20	1.9	20	88	0	58	73	0	0	26	0.83
7083011--7083232	52	4.3	52	88	3	306	37	22	14	24	1.92
7083011--7083247	103	2.3	104	87	3	327	37	23	15	24	1.93
7084335--7084528	97	2.0	97	93	0	334	36	17	18	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7084659--7084711	15	3.6	14	76	23	56	67	1	11	18	1.30
7084816--7084937	29	4.2	29	80	5	120	34	2	24	38	1.69
7084816--7084945	58	2.2	58	82	5	145	34	2	24	38	1.68
7084816--7085001	87	2.1	86	81	4	203	33	2	26	37	1.71
7084836--7085021	29	6.4	28	76	12	137	33	2	26	37	1.71
7084856--7085017	58	2.8	57	84	8	186	31	3	29	36	1.73
7084904--7085017	57	2.0	58	89	5	178	29	2	29	37	1.71
7086796--7086872	6	13.7	6	69	17	58	55	1	0	42	1.07
7086784--7086872	16	5.4	16	77	11	90	52	1	2	43	1.20
7086798--7086872	17	4.5	16	84	12	98	56	1	0	42	1.08
7086794--7086889	17	5.7	17	81	6	97	58	4	0	37	1.18
7087316--7087480	77	2.1	78	80	6	183	24	15	32	27	1.96
7087293--7087506	116	1.8	116	86	2	313	23	18	29	28	1.98
7087431--7087793	78	4.7	78	77	6	306	25	19	30	24	1.98
7087415--7087793	156	2.4	156	78	4	370	25	20	30	24	1.99
7087314--7087792	39	12.3	39	71	7	150	25	18	30	25	1.98
7099235--7099414	97	1.9	97	91	0	297	37	16	19	26	1.93
7099552--7099602	15	3.5	15	75	20	54	66	1	11	19	1.33
7099542--7099604	30	2.1	29	82	8	74	65	1	12	20	1.35
7099664--7099843	30	6.1	29	69	18	97	34	2	28	34	1.72
7099753--7099838	28	3.0	28	72	13	66	33	4	27	33	1.78
7101645--7101733	17	5.4	16	82	6	97	51	2	2	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7101661--7101733	6	13.0	6	73	13	66	54	1	0	43	1.08
7101655--7101733	17	4.7	17	88	1	115	55	2	0	41	1.13
7101679--7101733	11	4.9	11	82	4	65	58	1	0	40	1.09
7101655--7101750	17	5.7	17	85	1	104	57	5	0	37	1.21
7106237--7106263	14	1.9	14	100	0	54	14	22	25	37	1.93
7107933--7107975	16	2.6	17	77	7	52	30	6	27	34	1.83
7108474--7108513	22	1.9	19	85	14	53	42	0	10	47	1.37
7109066--7109103	20	2.0	20	94	5	69	34	5	10	50	1.59
7109266--7109307	10	4.4	10	80	19	54	42	0	0	57	0.99
7109269--7109306	19	2.1	19	90	5	60	39	0	0	60	0.97
7109667--7109741	10	7.8	10	68	24	54	34	2	2	60	1.25
7109754--7109845	31	3.0	30	84	6	112	47	11	6	33	1.66
7112594--7112712	31	3.9	30	73	18	104	24	10	10	53	1.68
7112768--7113144	189	2.0	188	88	1	567	38	11	8	41	1.71
7113133--7113305	60	2.9	60	80	6	183	50	9	15	25	1.73
7116244--7116286	21	2.2	19	83	8	50	51	2	4	41	1.35
7137195--7137262	29	2.3	29	82	7	75	32	2	13	51	1.56
7141138--7141163	6	4.3	6	100	0	52	15	34	0	50	1.45
7141356--7141405	6	8.3	6	95	0	91	52	0	32	16	1.44
7148641--7148679	20	1.9	21	84	5	53	61	2	30	5	1.31
7150723--7150788	27	2.4	27	94	0	114	40	21	16	21	1.91
7153790--7153820	16	2.0	15	93	6	53	38	22	0	38	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7164957--7164998	22	1.9	22	90	0	66	42	21	19	16	1.89
7170020--7170052	7	4.7	7	100	0	66	30	12	12	45	1.78
7171126--7171275	23	6.4	23	86	6	203	10	22	22	44	1.84
7171126--7171300	48	3.7	45	81	10	167	10	24	22	42	1.85
7171126--7171323	71	2.8	68	81	12	197	11	24	21	42	1.85
7182903--7182944	17	2.5	17	84	7	59	71	2	0	26	0.98
7183176--7183251	32	2.4	32	81	0	98	27	1	21	50	1.57
7184039--7184213	87	2.0	87	95	0	314	17	13	26	43	1.85
7184455--7184499	22	2.0	22	95	0	81	15	8	20	55	1.66
7188874--7188994	63	1.9	63	86	3	172	25	49	1	23	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144