genome.fa.s7.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  87  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20131390--20131449	23	2.7	22	80	10	61	21	8	1	68	1.25
20145202--20145232	8	4.0	8	95	4	55	51	9	12	25	1.70
20145196--20145232	16	2.5	15	87	12	58	54	8	13	24	1.66
20146154--20146214	32	1.9	32	86	6	88	59	9	4	26	1.50
20147917--20147968	21	2.5	21	87	12	72	28	30	11	28	1.92
20152553--20152590	19	2.0	20	89	5	60	39	23	13	23	1.90
20153921--20154152	77	3.0	80	77	9	210	45	13	10	30	1.77
20154041--20154303	76	3.4	76	70	9	237	47	12	9	31	1.73
20154139--20154376	76	3.1	75	69	11	230	47	10	9	31	1.70
20154062--20154407	154	2.3	154	95	1	615	46	12	9	32	1.73
20154312--20154500	83	2.3	83	82	7	222	48	11	11	28	1.74
20155221--20155282	32	1.9	32	86	0	88	58	9	3	29	1.46
20158146--20158199	16	3.6	16	73	19	62	50	0	0	50	1.00
20158127--20158227	30	3.4	29	91	5	159	50	0	0	48	1.07
20159375--20159421	18	2.5	19	80	10	53	31	0	6	61	1.21
20161809--20161914	12	9.1	12	71	9	58	66	18	6	8	1.41
20161854--20161886	15	2.2	15	89	10	50	66	18	6	9	1.40
20161850--20161915	23	2.8	24	79	2	80	66	18	6	9	1.40
20165300--20165422	26	4.8	26	83	4	133	34	17	11	37	1.85
20165496--20165578	26	3.2	25	89	5	121	40	14	7	37	1.74
20165308--20165676	182	2.0	182	92	1	605	35	15	10	38	1.82
20169023--20169113	25	3.6	25	77	5	85	37	24	17	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20177858--20177896	16	2.5	15	88	12	53	2	23	0	74	0.94
20178214--20178250	10	3.8	10	96	3	67	32	18	0	48	1.49
20178954--20178991	15	2.5	16	79	12	53	10	31	10	47	1.72
20181742--20181775	17	2.0	17	88	0	50	64	0	35	0	0.94
20188835--20188868	17	2.0	17	88	0	50	64	0	35	0	0.94
20208158--20208195	19	2.1	19	85	5	51	55	7	36	0	1.29
20208893--20208926	3	11.0	3	93	6	59	67	0	0	32	0.91
20216642--20216685	22	2.0	21	86	4	61	0	29	0	70	0.88
20231730--20231800	31	2.3	31	83	9	83	53	12	9	23	1.68
20232218--20232258	20	2.0	20	90	9	66	43	7	0	48	1.30
20233331--20233372	2	21.0	2	100	0	84	50	0	0	50	1.00
20237962--20238025	33	1.9	34	87	3	94	43	21	9	25	1.82
20238493--20238557	32	2.0	34	87	6	98	43	3	36	16	1.64
20238677--20238750	30	2.4	30	84	2	103	25	4	9	60	1.45
20239828--20239902	25	2.8	24	71	24	69	48	10	18	22	1.79
20242504--20242550	20	2.2	21	85	7	60	34	23	14	27	1.94
20245495--20245525	13	2.4	13	94	0	53	48	0	3	48	1.17
20247631--20247677	24	1.9	25	82	4	60	36	10	6	46	1.64
20251499--20251644	73	2.0	73	97	0	274	37	13	8	40	1.75
20260441--20260499	29	2.0	29	86	0	82	22	8	35	33	1.84
20264980--20265092	52	2.2	53	96	1	210	46	3	5	45	1.43
20264994--20265076	24	3.3	24	66	12	67	42	2	7	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20272710--20272849	40	3.5	40	93	0	235	41	9	25	23	1.84
20273513--20273581	21	3.3	21	87	0	75	27	15	24	31	1.96
20291972--20292015	19	2.3	19	84	7	54	68	6	22	2	1.25
20305491--20305557	23	2.8	22	79	18	80	22	4	4	68	1.26
20305498--20305561	23	2.7	23	82	15	85	23	4	4	67	1.29
20305652--20305712	7	9.3	6	74	15	50	19	0	4	75	0.98
20305652--20305701	13	4.0	13	75	17	52	20	0	4	76	0.95
20305651--20305711	26	2.3	27	83	13	74	21	0	4	73	1.01
20305665--20305701	18	2.1	17	90	5	56	21	0	2	75	0.92
20309499--20309537	16	2.8	13	79	20	51	28	20	10	41	1.85
20311660--20311704	5	9.8	5	84	15	62	86	0	13	0	0.57
20311660--20311706	17	2.8	17	87	9	69	87	0	12	0	0.55
20311660--20311706	9	5.3	9	82	12	62	87	0	12	0	0.55
20311661--20311704	23	2.0	23	95	4	81	86	0	13	0	0.57
20312571--20313199	102	6.2	102	85	0	706	35	18	19	26	1.95
20312630--20312788	50	3.1	50	65	3	129	37	18	16	27	1.93
20312830--20313102	50	5.4	48	66	17	142	34	19	21	25	1.96
20312778--20313045	52	5.2	52	66	7	161	34	19	20	25	1.96
20313814--20313865	13	3.8	13	78	17	52	55	32	1	9	1.43
20313815--20313872	29	2.1	26	87	9	80	56	27	1	13	1.47
20316840--20316886	25	1.9	25	91	4	78	21	4	4	70	1.22
20318791--20318870	37	2.2	36	86	2	115	47	1	0	51	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20322060--20322135	38	2.0	38	100	0	152	42	28	7	21	1.81
20325395--20325683	29	9.8	29	73	13	164	33	5	26	33	1.81
20325395--20325588	59	3.3	55	77	13	169	32	4	28	34	1.78
20325507--20325624	59	2.0	60	83	5	150	33	5	26	34	1.78
20325538--20325624	30	2.9	30	75	17	90	36	5	21	35	1.78
20325601--20325688	30	2.9	30	82	1	104	36	6	25	31	1.82
20326691--20326779	3	29.0	3	77	6	72	37	1	2	59	1.17
20326691--20326781	40	2.3	40	83	7	114	37	1	2	59	1.17
20327440--20327529	6	15.7	6	76	9	80	53	3	1	42	1.24
20327439--20327529	11	8.0	11	74	7	67	53	3	1	41	1.24
20327440--20327547	17	6.3	17	80	5	119	52	3	1	41	1.30
20327441--20327496	29	1.9	29	89	7	87	51	3	1	42	1.29
20327439--20327502	29	2.2	29	83	5	85	51	3	1	43	1.26
20327868--20328526	209	3.1	209	83	6	789	22	23	18	35	1.96
20340651--20340876	59	3.9	58	76	10	149	35	5	26	32	1.79
20340651--20340873	29	7.6	31	71	14	125	34	5	27	32	1.80
20340797--20340885	29	3.0	29	73	9	99	34	1	28	35	1.65
20340768--20340885	59	2.0	59	93	0	200	34	2	28	33	1.71
20340768--20340899	59	2.2	59	89	2	185	35	3	25	34	1.74
20341916--20341998	3	27.0	3	73	9	69	34	1	3	60	1.22
20342499--20342766	97	2.8	98	83	3	328	40	13	16	29	1.86
20343008--20343353	59	5.9	59	76	13	236	32	4	26	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20343035--20343363	30	11.1	31	76	13	236	32	3	26	37	1.74
20345207--20345249	22	1.9	22	85	4	59	55	6	2	34	1.39
20345935--20345979	18	2.6	18	85	3	56	51	4	4	40	1.42
20345991--20346034	17	2.6	18	85	10	65	54	2	0	43	1.12
20346335--20347019	209	3.3	207	86	2	856	21	23	19	36	1.95
20358208--20358398	30	6.4	29	71	18	110	34	5	26	34	1.79
20358195--20358331	59	2.3	59	84	2	177	35	5	26	32	1.80
20358195--20358359	59	2.8	59	80	7	158	35	5	26	32	1.79
20358378--20358445	29	2.4	29	87	7	95	42	0	20	36	1.52
20358265--20358463	89	2.2	89	78	7	215	33	3	27	36	1.74
20358447--20358510	30	2.1	30	85	0	83	29	4	25	40	1.76
20359533--20359626	3	30.7	3	78	10	84	35	1	3	60	1.20
20360315--20360355	17	2.4	17	91	0	64	51	0	2	46	1.14
20365066--20365104	21	1.9	20	85	15	53	38	10	12	38	1.78
20365443--20365472	15	2.0	15	93	0	51	43	6	23	26	1.78
20369468--20369517	21	2.4	21	82	0	64	36	26	12	26	1.91
20370219--20370265	18	2.6	18	86	3	58	25	27	21	25	1.99
20371646--20371826	51	3.5	51	91	0	281	29	13	24	31	1.94
20378441--20378624	51	3.6	51	89	2	253	28	14	25	31	1.95
20379706--20379945	117	2.1	117	98	0	462	31	18	4	45	1.70
20381392--20381425	11	3.1	11	91	0	50	35	0	26	38	1.57
20383478--20383527	25	2.0	26	84	7	68	66	12	8	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20385384--20385414	13	2.4	13	94	0	53	80	6	3	9	0.99
20389192--20389239	22	2.1	23	81	11	55	41	10	0	47	1.37
20409818--20409859	17	2.5	17	81	18	52	16	7	21	54	1.65
20410429--20410474	10	4.3	11	86	8	60	78	0	21	0	0.76
20414572--20414605	15	2.2	16	89	5	52	0	32	0	67	0.91
20419574--20419892	29	10.8	29	67	24	118	34	28	2	35	1.70
20419574--20419656	30	2.8	29	77	15	89	37	24	2	36	1.69
20419570--20420038	177	2.6	173	84	5	568	33	28	2	35	1.70
20419569--20420038	118	4.0	117	85	3	545	33	28	2	35	1.70
20419613--20420038	59	7.2	58	84	4	489	33	27	2	36	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144