genome.fa.s7.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  101  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23647664--23647695	2	16.0	2	100	0	64	50	0	0	50	1.00
23656264--23656304	16	2.5	17	80	7	50	58	7	4	29	1.46
23658575--23658768	97	2.0	97	85	4	266	38	14	18	28	1.90
23659028--23659112	30	2.9	29	70	19	77	35	4	27	32	1.78
23659067--23659317	29	8.7	28	74	17	178	34	5	27	32	1.80
23659018--23659288	59	4.6	59	83	7	286	34	5	26	33	1.81
23659195--23659405	87	2.4	87	80	10	220	36	5	26	31	1.80
23659307--23659471	29	5.7	28	71	12	111	39	4	21	33	1.75
23659295--23659471	58	3.0	58	81	8	191	38	4	23	33	1.75
23662774--23662807	2	17.0	2	100	0	68	50	0	0	50	1.00
23664005--23664219	59	3.7	57	69	10	148	38	8	23	29	1.85
23664003--23664270	118	2.3	117	83	5	328	36	8	23	30	1.86
23664257--23664475	29	7.5	29	80	7	212	33	3	26	36	1.74
23666523--23666578	6	9.8	6	74	18	57	53	1	1	42	1.21
23666522--23666578	11	5.1	11	77	12	62	54	1	1	42	1.21
23666523--23666578	17	3.3	17	87	7	78	53	1	1	42	1.21
23666524--23666580	28	2.0	28	86	6	80	54	1	1	42	1.21
23666832--23667094	92	2.8	92	97	1	481	33	20	15	31	1.93
23667029--23667160	66	2.0	66	100	0	264	36	22	13	27	1.92
23666936--23667426	158	3.0	158	90	6	766	34	20	15	30	1.93
23667094--23667664	92	6.4	92	91	4	936	33	19	15	31	1.93
23667312--23667566	52	5.4	50	66	24	176	33	18	15	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23667095--23667664	174	3.2	180	90	5	920	33	19	15	31	1.93
23667685--23667890	50	4.1	50	71	13	129	13	25	22	38	1.91
23669935--23669996	17	3.7	16	82	8	61	51	3	3	41	1.34
23669949--23670002	28	1.9	28	84	0	72	53	1	3	40	1.29
23671130--23671214	21	3.9	21	70	19	75	32	0	3	63	1.11
23671130--23671214	14	6.4	14	68	20	56	32	0	3	63	1.11
23674455--23674479	2	12.5	2	100	0	50	48	0	0	52	1.00
23679258--23679319	33	1.9	31	93	6	106	33	0	6	59	1.23
23680528--23680584	28	2.0	28	96	0	105	29	7	31	31	1.84
23689411--23689452	2	21.0	2	100	0	84	50	0	0	50	1.00
23695964--23696017	24	2.2	24	100	0	108	14	20	16	48	1.81
23699987--23700027	16	2.5	17	84	7	50	56	7	4	31	1.48
23706194--23706245	18	2.9	18	91	0	77	13	40	19	26	1.88
23706671--23706741	2	37.0	2	88	8	112	49	0	1	49	1.09
23707063--23707097	18	1.9	18	94	0	61	57	0	0	42	0.99
23708131--23708169	18	2.2	19	86	9	55	56	0	23	20	1.42
23711785--23711922	29	4.7	30	75	12	126	32	5	27	34	1.81
23711828--23711980	59	2.6	59	81	3	166	36	5	22	35	1.78
23711820--23711980	29	5.4	30	79	5	141	37	5	22	34	1.78
23713125--23713160	18	1.9	19	88	5	56	33	5	5	55	1.46
23713806--23713895	6	15.5	6	69	11	62	54	4	2	38	1.33
23713801--23713835	18	1.9	18	88	0	52	57	2	2	37	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23713806--23713884	23	3.4	23	78	1	95	53	5	2	39	1.37
23713852--23713895	17	2.6	18	86	13	67	59	4	0	36	1.18
23714272--23714998	204	3.6	203	88	3	1000	21	22	20	34	1.96
23714204--23715040	204	4.1	202	86	3	983	22	22	20	35	1.96
23715313--23715569	49	5.2	49	73	10	173	15	23	19	42	1.88
23715390--23715507	50	2.3	51	77	9	125	11	27	18	41	1.86
23715463--23715595	49	2.7	50	77	2	142	14	24	19	41	1.89
23716694--23716788	1	95.0	1	68	0	55	0	6	9	84	0.78
23716702--23716765	6	10.8	6	84	15	89	0	0	14	85	0.59
23716699--23716765	35	1.9	34	91	8	109	0	0	13	86	0.57
23716696--23716788	24	3.9	23	78	13	82	0	6	9	83	0.79
23716696--23716783	19	4.9	18	80	14	76	0	5	10	84	0.78
23716701--23716778	41	1.9	41	86	5	113	0	3	11	84	0.74
23716701--23716759	7	8.6	7	85	10	70	0	0	13	86	0.57
23717630--23717656	4	6.8	4	100	0	54	0	22	0	77	0.76
23722619--23722819	30	6.8	29	79	7	183	33	3	24	37	1.73
23722619--23722819	59	3.4	58	81	5	215	33	3	24	37	1.73
23723972--23724007	18	1.9	19	88	5	56	33	5	5	55	1.46
23724683--23724766	6	14.7	6	76	9	86	55	3	0	40	1.17
23724683--23724766	17	4.9	17	82	2	80	55	3	0	40	1.17
23724683--23724766	23	3.7	23	77	6	91	55	3	0	40	1.17
23724680--23724766	34	2.6	34	83	3	104	57	3	0	39	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23728237--23728271	18	1.9	18	88	0	52	54	0	0	45	0.99
23729312--23729350	18	2.2	19	86	9	55	56	0	23	20	1.42
23739599--23739639	16	2.5	17	84	7	50	56	7	4	31	1.48
23755613--23755655	18	2.4	18	80	7	52	13	9	2	74	1.16
23757555--23757600	15	3.1	15	77	0	56	65	6	0	28	1.17
23757758--23757820	27	2.3	27	94	0	108	15	31	33	19	1.93
23757759--23757839	27	3.0	27	85	3	101	18	30	29	20	1.97
23757993--23758123	57	2.4	55	78	10	142	56	5	2	35	1.35
23758189--23758249	27	2.3	27	94	0	104	14	24	39	21	1.91
23758324--23758381	26	2.2	26	84	0	71	55	5	29	10	1.55
23761128--23761185	28	2.1	28	83	6	73	36	1	12	50	1.50
23761177--23761226	26	1.9	26	83	0	64	32	0	10	58	1.31
23761292--23761320	6	4.8	6	100	0	58	65	17	0	17	1.27
23763728--23763759	16	2.1	16	94	5	57	59	0	0	40	0.97
23765083--23765166	42	2.0	42	88	0	123	48	14	0	36	1.44
23766039--23766418	191	2.0	191	96	0	697	35	13	15	35	1.87
23770250--23770294	11	4.4	10	83	13	56	66	0	2	31	1.04
23770250--23770294	20	2.2	21	88	11	67	66	0	2	31	1.04
23773428--23773462	6	5.8	6	100	0	70	51	14	0	34	1.42
23773720--23773778	22	2.8	20	75	14	64	49	6	15	28	1.70
23777336--23777381	2	23.0	2	100	0	92	50	0	0	50	1.00
23779493--23779534	17	2.2	20	84	12	54	40	7	23	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23781060--23781231	27	6.4	27	80	1	157	29	13	22	35	1.92
23781060--23781235	81	2.2	80	82	1	208	28	13	21	36	1.92
23785223--23785284	20	3.1	19	81	9	79	29	11	12	46	1.77
23797221--23797246	12	2.2	12	100	0	52	7	7	0	84	0.77
23805443--23805476	17	2.0	17	88	0	50	52	0	0	47	1.00
23806469--23806526	21	2.8	21	83	0	71	29	24	12	34	1.91
23811283--23811347	24	2.7	24	80	7	69	63	0	0	36	0.95
23815919--23815970	24	2.2	24	82	0	59	30	3	9	55	1.50
23819599--23819626	3	9.3	3	100	0	56	64	0	0	35	0.94
23824557--23824628	33	2.1	34	92	7	121	27	20	0	51	1.48
23827460--23827490	16	1.9	16	93	0	53	58	22	0	19	1.40
23831789--23831833	19	2.3	21	81	14	60	33	4	0	62	1.15
23835777--23835833	24	2.4	24	84	0	69	52	8	12	26	1.67
23835789--23835887	24	4.1	24	85	2	110	55	8	8	28	1.57
23835796--23835892	48	2.0	47	86	5	133	53	7	8	30	1.58
23837684--23838097	30	13.8	30	87	2	548	35	4	23	35	1.75
23839755--23839785	16	1.9	16	93	0	53	12	6	58	22	1.58
23839970--23840102	6	22.8	6	74	14	109	52	0	1	45	1.15
23839996--23840102	33	3.3	33	92	2	164	57	0	0	40	1.11
23839996--23840102	17	6.6	16	85	9	146	57	0	0	40	1.11
23840432--23841385	68	14.0	68	88	2	1391	27	20	16	35	1.94
23853219--23853637	30	14.0	30	87	2	538	35	3	24	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23855291--23855321	16	1.9	16	93	0	53	12	6	58	22	1.58
23855506--23855605	6	16.8	6	73	13	73	51	1	2	46	1.19
23855532--23855610	16	4.9	16	80	10	81	58	2	1	37	1.20
23855569--23855626	27	2.1	27	90	0	89	56	5	0	37	1.21
23856220--23856277	28	2.0	28	86	3	80	65	6	3	24	1.33
23856447--23856508	25	2.5	25	87	7	83	67	3	8	20	1.31
23859298--23859333	16	2.2	17	90	5	56	27	0	0	72	0.85
23860230--23860283	25	2.2	25	83	6	67	37	33	14	14	1.88
23860412--23860446	13	2.6	13	90	4	52	17	17	14	51	1.77
23862967--23863657	314	2.2	314	81	6	842	26	16	26	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144