genome.fa.s7.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  63  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13494076--13494147	27	2.7	27	82	0	81	27	15	23	33	1.95
13499836--13499897	29	2.1	29	85	5	81	45	24	8	22	1.79
13501688--13501839	63	2.7	51	76	21	178	31	17	23	28	1.96
13501705--13501830	63	2.0	63	98	0	243	30	17	23	28	1.97
13501768--13501881	51	2.2	51	83	9	135	33	16	22	27	1.96
13502580--13502631	21	2.5	19	80	17	59	28	11	25	34	1.91
13510744--13510867	23	5.3	23	79	12	121	13	23	20	42	1.87
13510778--13510907	68	1.9	65	87	12	190	14	22	20	42	1.88
13517844--13517970	23	5.4	23	81	9	114	10	22	22	45	1.81
13517845--13517969	46	2.7	47	79	10	139	10	22	21	45	1.82
13517868--13518017	69	2.1	69	83	11	182	12	22	20	45	1.84
13519327--13519368	2	21.0	2	95	0	75	50	2	0	47	1.14
13520422--13520473	3	17.3	3	80	7	61	1	34	0	63	1.06
13543642--13543694	18	2.9	18	80	0	70	18	13	28	39	1.88
13545113--13545249	38	3.8	35	76	16	102	24	14	24	35	1.93
13545141--13545250	38	2.9	37	80	10	125	25	12	26	35	1.92
13545225--13545320	37	2.6	37	80	1	122	21	16	34	27	1.95
13546478--13546514	17	2.2	17	95	0	65	51	13	18	16	1.76
13546485--13546524	17	2.4	17	87	8	55	55	10	17	17	1.69
13549724--13549778	26	2.1	26	86	0	74	30	20	18	30	1.96
13551225--13551252	13	2.2	13	100	0	56	10	21	17	50	1.77
13558764--13558806	12	3.6	12	77	22	54	34	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13558762--13558806	24	1.9	23	95	4	81	37	0	2	60	1.09
13559385--13559418	17	2.1	17	88	5	52	55	0	0	44	0.99
13564310--13564353	18	2.4	18	96	0	79	34	18	0	47	1.49
13585654--13585679	4	6.5	4	100	0	52	26	0	0	73	0.84
13588885--13588943	22	2.7	22	92	5	93	32	10	16	40	1.82
13595783--13595824	22	2.0	22	86	13	61	57	4	28	9	1.51
13609074--13609168	48	2.0	48	93	0	163	24	23	17	34	1.96
13610686--13610748	17	3.5	17	72	14	56	53	3	0	42	1.16
13610686--13610729	17	2.6	17	89	3	63	52	2	0	45	1.13
13610810--13610871	27	2.4	26	77	17	67	54	4	0	40	1.22
13610870--13610944	32	2.4	31	84	4	96	44	5	4	46	1.45
13611961--13612024	29	2.2	29	85	0	83	53	14	7	25	1.67
13612709--13612767	28	2.1	27	82	14	68	28	10	15	45	1.78
13612708--13612761	28	1.9	28	85	7	74	29	11	14	44	1.80
13614074--13614145	35	2.1	35	97	0	135	23	5	20	50	1.69
13615806--13615856	22	2.3	22	83	10	59	49	3	7	39	1.51
13615813--13615856	22	1.9	24	86	9	65	45	4	9	40	1.56
13625693--13626119	30	14.5	29	80	5	389	36	3	26	34	1.72
13625693--13626119	59	7.2	57	80	6	385	36	3	26	34	1.72
13636160--13636602	30	15.0	29	77	9	344	35	1	26	35	1.67
13636155--13636601	60	7.6	60	80	6	432	35	1	26	36	1.67
13636151--13636601	119	3.8	118	81	6	427	35	1	26	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13639649--13639705	29	1.9	30	82	10	73	29	1	8	59	1.38
13639894--13639958	31	2.3	27	77	15	67	46	12	4	36	1.62
13647482--13647558	20	4.4	18	71	26	60	49	0	1	49	1.09
13647491--13647593	29	3.4	29	84	5	134	51	0	0	47	1.07
13647507--13647566	17	3.8	17	75	20	67	51	0	0	48	1.00
13647611--13647640	15	2.0	15	93	0	51	6	36	0	56	1.26
13648413--13648488	11	6.7	11	73	15	66	52	1	0	46	1.08
13648443--13648488	21	2.2	21	88	7	67	56	0	0	43	0.99
13648413--13648525	48	2.4	48	85	7	149	50	1	0	47	1.11
13648606--13648672	29	2.3	29	100	0	134	22	34	20	22	1.97
13650887--13650925	20	2.0	20	89	0	60	17	10	56	15	1.66
13660477--13660583	55	1.9	55	90	0	169	38	13	18	29	1.89
13663054--13663113	22	2.7	22	71	0	57	23	45	13	18	1.84
13664077--13664138	29	2.1	29	82	11	74	25	3	16	54	1.56
13667364--13667397	16	2.2	16	94	5	61	52	14	5	26	1.64
13667831--13667874	20	2.1	21	83	8	54	40	13	6	38	1.71
13671522--13671572	26	2.0	26	84	0	66	33	21	0	45	1.52
13671527--13671575	13	3.8	13	76	10	55	30	22	0	46	1.52
13674957--13674997	9	4.4	9	84	6	55	80	2	0	17	0.82
13674957--13674997	5	8.8	5	79	15	52	80	2	0	17	0.82
13675635--13675663	15	2.0	15	93	6	51	79	0	6	13	0.93
13684976--13685001	12	2.2	12	100	0	52	46	7	0	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13689318--13689511	97	2.0	97	87	2	282	37	15	19	27	1.92
13689859--13690126	29	9.3	29	79	12	239	36	4	24	34	1.76
13689859--13690126	58	4.6	59	83	8	293	36	4	24	34	1.76
13691906--13691982	35	2.2	34	88	2	109	57	5	2	35	1.35
13691906--13691982	17	4.5	17	80	3	82	57	5	2	35	1.35
13692376--13692871	78	6.4	78	83	2	577	24	19	29	25	1.99
13692376--13692910	39	13.7	39	71	10	317	24	20	29	25	1.99
13704440--13704627	97	1.9	97	82	1	234	38	14	18	29	1.90
13704919--13705085	58	2.9	58	74	11	144	34	4	26	34	1.78
13704939--13705085	29	5.1	28	70	11	91	33	5	27	33	1.80
13706812--13706887	6	13.3	6	74	10	70	56	1	1	40	1.16
13706826--13706881	11	4.8	12	80	6	53	60	1	0	37	1.07
13706825--13706916	17	5.3	17	89	2	130	59	4	0	35	1.17
13708638--13708805	85	2.0	85	87	4	241	38	16	20	24	1.92
13708723--13708814	48	1.9	48	84	0	121	36	14	23	25	1.92
13708552--13708977	210	2.0	209	89	2	658	37	17	22	23	1.94
13708896--13709072	37	4.7	37	79	5	185	37	16	22	22	1.93
13709963--13709991	14	2.0	15	93	6	51	75	0	10	13	1.04
13713199--13713239	21	2.0	21	90	0	64	2	46	19	31	1.63
13713532--13713598	33	2.1	33	94	2	118	41	10	5	41	1.64
13713620--13713701	8	9.8	8	73	21	62	56	2	0	41	1.13
13713620--13713842	18	11.9	18	68	14	105	52	4	1	42	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13713617--13713754	22	6.9	21	71	14	87	54	2	0	42	1.20
13713621--13713696	40	1.9	40	91	0	125	56	2	0	40	1.13
13713620--13713862	58	3.9	58	69	14	171	51	4	1	43	1.28
13713719--13713756	12	3.4	11	85	14	51	55	0	2	42	1.14
13713719--13713802	22	3.5	22	70	17	69	51	4	3	40	1.40
13713668--13713889	112	2.0	111	81	8	263	49	4	2	44	1.35
13713789--13713909	18	6.9	17	68	22	63	45	2	1	50	1.25
13717429--13717546	42	2.8	40	78	12	112	27	26	21	24	1.99
13717447--13717583	42	3.3	41	81	3	148	25	25	24	24	2.00
13717469--13717596	41	3.1	41	82	2	148	26	24	27	21	1.99
13717572--13717661	40	2.2	40	84	3	110	22	23	24	30	1.99
13718135--13718197	33	1.9	33	90	0	99	47	1	25	25	1.61
13718136--13718191	17	3.4	17	72	22	55	46	1	26	25	1.63
13719603--13719698	41	2.3	41	92	0	156	35	27	6	31	1.82
13719688--13719726	17	2.3	17	86	8	53	48	20	15	15	1.81
13722997--13723050	23	2.3	23	74	0	54	50	16	18	14	1.79
13726234--13726299	24	2.9	23	77	8	73	60	3	3	33	1.27
13727473--13727696	59	3.8	57	85	4	252	33	27	4	34	1.78
13727399--13727683	29	9.7	31	74	18	202	34	26	4	34	1.78
13727423--13727691	30	9.1	30	72	18	172	33	26	4	35	1.78
13732902--13732994	18	4.9	18	71	17	73	77	1	16	5	1.01
13732904--13732967	29	2.2	28	84	13	78	78	0	18	3	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13732919--13732968	21	2.4	21	87	12	68	78	0	20	2	0.86
13733909--13734192	50	5.7	50	76	6	197	35	16	29	17	1.92
13734384--13734508	39	3.2	38	82	4	160	24	33	22	19	1.97
13734363--13734508	78	1.9	78	87	5	215	25	32	20	21	1.97
13734583--13734728	75	1.9	75	83	5	188	41	20	18	19	1.91
13734614--13735083	172	2.7	172	93	0	796	37	17	22	22	1.94
13736102--13736167	24	2.9	23	77	8	73	60	3	3	33	1.27
13737275--13737490	29	7.3	29	75	15	185	35	25	3	34	1.74
13737246--13737605	59	6.1	59	83	8	383	35	24	4	35	1.76
13737472--13737566	31	3.1	29	72	15	84	42	22	4	31	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144