genome.fa.s7.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  75  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16500029--16501633	801	2.0	800	98	0	3102	28	17	24	28	1.98
16526510--16526581	22	3.3	22	80	0	90	26	16	22	34	1.95
16526622--16526685	34	1.9	33	87	9	94	29	10	26	32	1.90
16526662--16526752	29	3.1	29	83	0	101	32	25	20	20	1.97
16531443--16531629	37	5.1	37	80	2	205	33	31	20	14	1.93
16532396--16532429	11	3.0	11	83	8	50	76	0	5	17	0.98
16555285--16555468	23	8.0	23	86	0	253	49	15	3	31	1.62
16555285--16555464	69	2.6	69	89	0	279	49	14	3	32	1.61
16555541--16555671	66	2.0	66	86	3	183	42	25	11	19	1.85
16555926--16556106	36	5.0	36	84	2	238	33	22	11	32	1.90
16558747--16559021	23	12.0	23	85	3	365	48	13	3	34	1.60
16559098--16559234	66	2.1	65	83	5	168	39	27	11	21	1.88
16559486--16559703	36	6.1	36	83	4	244	38	22	9	28	1.86
16559486--16559709	72	3.1	71	82	4	281	38	23	9	29	1.86
16562672--16562704	16	2.1	16	94	0	57	24	18	6	51	1.68
16566593--16566650	25	2.3	24	79	5	62	55	6	1	36	1.37
16566689--16566753	30	2.2	30	88	5	96	55	15	4	24	1.59
16573655--16573784	23	5.4	25	78	13	96	13	22	20	43	1.86
16573679--16573784	48	2.2	49	77	13	112	14	21	19	44	1.86
16576960--16577193	52	4.5	52	89	0	315	36	25	12	25	1.91
16583030--16583091	23	2.7	23	92	2	99	61	14	11	12	1.57
16589893--16589918	13	2.0	13	100	0	52	15	38	0	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16599186--16599234	10	5.1	10	85	5	57	46	28	2	22	1.63
16601105--16601236	61	2.2	60	84	5	167	31	27	10	31	1.90
16601315--16601410	29	3.3	29	70	8	88	31	26	19	22	1.98
16604632--16604660	15	1.9	15	100	0	58	48	6	17	27	1.72
16608639--16608718	39	2.1	39	97	0	151	33	20	12	33	1.90
16608853--16608956	43	2.4	43	91	0	163	11	25	15	47	1.79
16614471--16614495	1	25.0	1	100	0	50	0	0	100	0	0.00
16617152--16617176	5	5.0	5	100	0	50	20	0	0	80	0.72
16620395--16620471	30	2.6	30	74	0	82	18	24	35	22	1.96
16624996--16625077	34	2.4	34	85	0	101	21	8	35	34	1.84
16635752--16635801	18	2.8	18	96	3	93	36	6	6	52	1.51
16636700--16636746	17	2.8	17	75	12	53	40	2	0	57	1.11
16636724--16636767	21	2.1	21	88	12	65	45	0	2	52	1.13
16637658--16637709	18	2.9	17	77	8	50	34	1	0	63	1.06
16637679--16637717	18	2.2	18	86	4	53	23	5	2	69	1.21
16637668--16637787	10	12.3	9	70	18	64	30	5	2	61	1.32
16637752--16637797	13	3.8	13	78	18	55	32	4	0	63	1.14
16637735--16637797	22	3.0	21	86	9	83	30	4	1	63	1.24
16637749--16637810	23	2.6	24	72	10	65	30	4	3	61	1.33
16637804--16637863	30	2.0	30	86	3	84	40	1	1	56	1.19
16637810--16637895	26	3.2	26	76	17	68	34	1	1	62	1.10
16637863--16637891	10	2.9	10	100	0	58	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16637806--16637896	27	3.3	27	79	11	85	34	1	1	63	1.09
16638727--16638769	15	3.0	14	76	6	50	48	0	0	51	1.00
16638726--16638807	38	2.1	40	88	4	123	50	0	1	48	1.08
16639432--16639473	21	2.0	21	100	0	84	38	14	14	33	1.86
16639615--16639655	11	3.9	11	90	6	59	56	0	34	9	1.32
16639667--16639729	30	2.1	30	85	5	83	52	4	0	42	1.22
16648448--16648490	23	1.9	22	85	4	59	53	0	0	46	1.00
16651069--16651126	29	2.0	30	83	10	75	27	1	1	68	1.08
16651258--16651304	16	3.2	15	85	8	53	63	0	0	36	0.94
16651240--16651302	32	2.0	32	81	6	74	58	1	0	39	1.07
16656491--16656546	21	2.6	22	81	13	73	26	7	35	30	1.83
16656700--16656746	3	15.3	3	80	12	51	57	0	8	34	1.29
16664356--16664385	4	7.5	4	92	0	51	73	0	0	26	0.84
16671713--16671760	25	1.9	25	82	0	60	22	6	16	54	1.65
16672012--16672404	196	2.0	196	95	0	705	25	16	21	37	1.93
16674582--16674618	18	2.0	19	89	5	58	81	2	0	16	0.81
16675486--16675642	29	5.3	30	78	9	142	35	25	3	36	1.72
16675463--16675637	30	5.9	29	77	7	138	36	25	4	34	1.75
16675473--16675642	59	2.8	60	78	6	166	35	25	3	35	1.73
16675475--16675754	29	9.5	29	71	10	88	37	23	3	35	1.71
16676008--16676200	97	2.0	96	91	1	314	27	17	16	38	1.91
16687545--16688234	39	17.7	39	70	8	418	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16687540--16688296	78	9.7	78	81	1	786	25	31	18	24	1.97
16687540--16688322	156	5.0	156	82	3	889	25	31	18	24	1.98
16687540--16688296	234	3.2	232	82	3	921	25	31	18	24	1.97
16688721--16688816	17	5.7	17	81	2	104	38	1	5	55	1.29
16688738--16688790	11	4.7	11	76	4	52	39	0	3	56	1.17
16688738--16688814	6	13.7	6	69	13	56	42	1	2	53	1.23
16688783--16688821	16	2.4	16	86	0	51	46	5	0	48	1.24
16690618--16690758	59	2.4	59	81	7	162	35	28	4	31	1.77
16690543--16690744	30	6.7	29	76	12	133	36	26	4	32	1.77
16691078--16691280	97	2.1	97	83	2	255	30	17	14	37	1.90
16699503--16699698	43	4.6	42	79	5	153	29	22	11	36	1.90
16699503--16699624	42	2.9	43	85	6	160	27	21	13	37	1.90
16701727--16701771	20	2.2	20	80	0	54	11	28	17	42	1.84
16702577--16702648	27	2.6	27	86	2	99	33	25	16	25	1.96
16707338--16707401	27	2.4	27	87	7	87	37	20	18	23	1.94
16709548--16709675	54	2.4	54	81	5	152	23	21	29	25	1.99
16711899--16711924	12	2.2	12	100	0	52	53	0	0	46	1.00
16713667--16713705	19	2.0	20	85	9	55	51	10	0	38	1.36
16715831--16715905	24	3.1	24	98	0	141	22	8	9	60	1.54
16719611--16719661	25	2.0	25	96	0	93	37	5	13	43	1.69
16723300--16723340	21	2.0	21	85	9	57	31	12	14	41	1.83
16729306--16729348	17	2.5	17	81	11	52	48	0	9	41	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16729335--16729368	13	2.6	14	81	18	54	52	0	0	47	1.00
16729336--16729368	17	1.9	17	93	0	57	51	0	0	48	1.00
16731210--16731243	17	2.0	17	94	0	59	32	0	0	67	0.91
16731420--16731465	17	2.7	17	79	0	56	47	6	0	45	1.28
16743430--16743468	21	1.9	21	89	5	62	12	12	7	66	1.43
16745646--16745699	3	18.0	3	92	0	81	68	0	31	0	0.90
16746450--16746480	16	1.9	16	93	0	53	77	0	22	0	0.77
16751804--16752038	36	6.5	35	80	7	224	37	22	15	23	1.93
16751800--16752038	108	2.2	107	82	3	284	37	22	15	24	1.93
16758342--16758410	31	2.3	28	78	9	75	30	15	15	37	1.90
16758339--16758614	92	3.0	90	85	3	356	30	12	13	43	1.82
16760900--16760938	6	6.5	6	87	0	51	23	30	0	46	1.53
16765249--16765277	14	2.0	15	93	6	51	0	34	0	65	0.93
16766599--16766703	51	2.1	51	96	0	192	38	18	17	26	1.92
16779343--16779404	6	10.5	6	79	10	56	27	22	0	50	1.50
16784161--16784253	37	2.4	37	80	8	98	26	29	23	20	1.99
16784157--16784253	40	2.5	38	80	8	108	25	27	24	21	1.99
16784379--16784446	6	11.5	6	81	9	59	26	23	0	50	1.50
16784398--16784446	18	2.7	18	90	0	80	22	26	0	51	1.49
16784398--16784446	12	4.1	12	89	0	71	22	26	0	51	1.49
16787686--16787929	68	3.6	67	85	5	323	20	24	19	35	1.96
16789598--16789887	90	3.2	88	79	10	304	39	2	23	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16789598--16789883	119	2.4	118	82	7	344	39	2	23	35	1.67
16789598--16789898	30	10.1	29	78	8	259	38	2	24	34	1.69
16789602--16789883	60	4.7	59	84	5	302	39	1	23	35	1.65
16791562--16791718	39	4.0	39	77	0	107	25	17	31	25	1.97
16791584--16792239	39	16.8	38	66	9	174	23	17	31	26	1.97
16791767--16792228	78	5.9	78	86	2	604	24	19	30	26	1.98
16791590--16792239	156	4.2	155	79	3	599	23	18	31	26	1.97
16795329--16795448	59	2.0	59	100	0	240	21	14	21	42	1.88
16798174--16798217	21	2.1	21	95	0	79	22	15	22	38	1.92
16804288--16804606	30	10.7	30	75	11	266	39	1	24	35	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144