genome.fa.s7.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  111  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25777627--25777699	12	6.2	12	75	3	67	68	21	5	4	1.27
25777651--25777782	20	6.2	20	77	11	113	71	18	4	5	1.23
25777670--25777782	41	2.7	40	81	8	120	71	18	4	5	1.22
25777690--25777782	22	4.5	21	76	10	93	72	18	4	5	1.21
25780680--25780738	29	2.0	30	86	3	84	28	6	15	49	1.70
25780881--25780965	31	2.9	30	74	8	86	43	14	9	32	1.77
25781524--25781553	12	2.5	12	100	0	60	26	33	20	20	1.97
25790317--25790356	1	40.0	1	94	0	71	2	0	97	0	0.17
25792168--25792205	16	2.4	16	86	8	51	34	0	2	63	1.09
25794509--25794562	22	2.5	20	76	23	56	59	7	7	25	1.51
25794878--25794931	22	2.5	20	76	23	56	59	7	7	25	1.51
25794416--25795150	369	2.0	369	98	0	1407	43	8	20	28	1.80
25795014--25795299	58	4.9	59	80	5	208	36	6	23	33	1.81
25795119--25795299	58	3.1	58	85	4	249	29	6	27	37	1.81
25795134--25795388	29	8.7	29	73	10	191	32	4	26	36	1.76
25795074--25795390	117	2.7	115	82	6	327	35	5	24	34	1.78
25795107--25795396	58	4.9	60	81	9	226	33	5	24	36	1.79
25796472--25796537	19	3.4	19	79	14	55	36	1	6	56	1.34
25797207--25797296	6	15.5	6	68	15	55	48	3	1	46	1.25
25797230--25797307	17	4.6	17	81	0	93	53	3	1	41	1.27
25800798--25800833	18	2.0	18	88	0	54	44	0	0	55	0.99
25801245--25801277	7	4.6	7	92	7	57	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25801655--25801683	12	2.5	12	94	5	51	48	10	0	41	1.37
25807504--25807553	25	2.0	25	100	0	100	28	12	20	40	1.87
25815179--25815212	14	2.2	16	90	10	54	52	5	0	41	1.25
25815256--25815309	23	2.4	22	76	14	56	46	3	0	50	1.19
25819305--25819355	26	1.9	26	84	11	68	70	0	17	11	1.16
25821344--25821399	26	2.1	27	83	9	71	41	5	3	50	1.43
25821949--25821999	26	1.9	26	84	11	68	68	0	19	11	1.20
25837347--25837384	16	2.4	16	90	0	58	31	7	5	55	1.51
25840588--25840617	14	2.2	13	94	5	51	66	3	0	30	1.07
25841019--25841103	36	2.4	36	84	7	104	36	18	11	32	1.88
25841054--25841103	12	4.2	13	78	17	63	36	20	14	30	1.91
25841060--25841126	23	2.8	24	88	2	100	40	20	13	25	1.89
25843482--25843581	17	5.5	17	75	17	94	39	1	3	57	1.21
25843482--25843587	23	4.7	22	74	14	83	40	0	2	55	1.21
25843481--25843587	40	2.9	36	81	9	119	41	0	2	55	1.21
25843492--25843585	11	8.2	12	75	13	90	39	1	3	56	1.22
25844240--25844286	22	2.1	23	88	4	69	59	4	0	36	1.17
25844222--25844286	19	3.5	17	78	17	60	60	3	0	36	1.13
25844229--25844298	10	7.1	10	73	16	58	57	2	0	40	1.14
25846307--25846332	12	2.2	12	100	0	52	42	15	7	34	1.75
25857193--25857240	23	2.1	23	92	0	78	22	14	12	50	1.77
25858884--25858967	42	2.0	42	86	9	118	30	0	22	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25861820--25861862	20	2.2	20	83	8	52	6	9	41	41	1.64
25861904--25861948	21	2.1	21	84	8	56	31	2	2	64	1.18
25866379--25866411	17	2.0	16	94	5	57	27	0	0	72	0.85
25875550--25875586	17	2.2	18	85	9	51	56	0	21	21	1.42
25875537--25875588	22	2.4	22	80	6	61	53	1	21	23	1.55
25878464--25878753	95	3.1	95	100	0	580	27	12	12	47	1.77
25879833--25879874	20	2.1	20	91	8	68	23	14	11	50	1.76
25880501--25880534	6	5.7	6	100	0	68	35	0	0	64	0.94
25880903--25880990	40	2.2	42	80	12	103	54	1	9	35	1.40
25881365--25881412	6	7.7	6	78	17	53	81	0	4	14	0.84
25881362--25881390	14	2.0	15	93	6	51	75	0	3	20	0.94
25881349--25881540	87	2.2	85	88	10	273	54	2	8	34	1.44
25881766--25881821	18	3.2	18	77	10	62	55	1	0	42	1.10
25882867--25882937	31	2.4	29	85	4	88	38	4	1	56	1.28
25882914--25882948	17	2.1	17	88	0	52	45	2	0	51	1.16
25882981--25883078	27	3.5	27	86	6	142	46	22	13	17	1.82
25882985--25883078	29	3.4	27	88	4	134	47	22	13	15	1.81
25883670--25883711	3	14.0	3	100	0	84	66	0	0	33	0.92
25884816--25885050	90	2.6	89	89	1	362	37	23	3	34	1.72
25884825--25885101	59	4.7	59	81	3	171	37	23	3	35	1.72
25884816--25885050	30	7.8	30	86	1	310	37	23	3	34	1.72
25892985--25893051	21	3.2	21	76	0	71	40	14	38	5	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25893348--25893461	43	2.7	43	87	1	158	25	17	28	28	1.98
25895890--25895964	22	3.4	21	75	14	71	64	2	1	32	1.16
25895901--25895969	30	2.3	30	87	7	95	66	4	1	27	1.19
25906478--25906800	176	1.8	176	85	4	459	39	17	16	26	1.91
25915520--25915557	20	2.0	20	89	5	60	15	18	5	60	1.53
25916646--25916794	40	3.8	40	80	2	149	34	18	20	25	1.96
25925608--25925637	2	15.0	2	100	0	60	50	0	0	50	1.00
25928760--25928827	17	4.1	17	78	1	75	44	2	1	51	1.25
25930653--25931031	59	6.4	59	89	3	543	32	31	3	31	1.75
25930663--25931009	117	3.0	118	91	1	538	32	32	2	32	1.72
25930990--25931059	28	2.5	28	86	9	81	28	30	11	30	1.92
25942203--25942233	10	2.9	11	90	9	55	64	6	9	19	1.45
25942836--25942933	23	4.2	23	82	10	126	12	24	22	40	1.88
25942932--25943025	23	4.0	23	75	16	86	11	25	19	43	1.84
25949245--25949342	23	4.2	23	82	10	126	11	25	23	39	1.88
25949341--25949434	23	4.0	23	75	16	86	11	25	19	43	1.84
25951584--25952321	76	9.8	76	94	1	1157	33	15	17	33	1.92
25951584--25952306	150	4.8	151	93	1	1173	33	15	17	33	1.92
25952644--25953284	200	3.2	200	94	0	1104	33	21	24	19	1.97
25953627--25953708	17	4.8	17	77	4	76	47	2	1	48	1.22
25953628--25953708	6	14.0	6	69	21	57	48	2	1	48	1.23
25953634--25953708	34	2.1	36	82	4	100	48	2	1	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25955540--25955880	59	5.8	59	88	2	490	33	28	2	35	1.71
25955540--25955880	117	2.9	115	88	3	484	33	28	2	35	1.71
25962036--25962063	2	14.0	2	100	0	56	50	50	0	0	1.00
25968008--25968127	64	1.9	64	94	0	213	24	5	19	50	1.69
25968606--25968646	20	2.0	20	90	0	64	63	4	0	31	1.15
25971992--25972026	16	2.2	16	89	0	52	40	2	2	54	1.30
25974677--25974736	31	1.9	31	93	0	102	36	20	16	26	1.93
25978780--25978994	111	2.0	105	84	5	277	23	25	25	26	2.00
25989200--25989226	14	1.9	14	100	0	54	81	0	18	0	0.69
25989556--25989598	15	2.9	15	83	10	54	32	2	0	65	1.06
26003067--26003225	59	2.7	57	79	5	174	45	10	16	27	1.81
26003150--26003254	31	3.6	29	76	17	101	45	6	17	30	1.74
26003146--26003230	26	3.1	26	77	21	93	51	5	15	27	1.66
26003064--26003254	57	3.2	59	76	8	194	44	9	16	28	1.80
26007233--26007263	13	2.4	13	100	0	62	12	16	29	41	1.85
26010288--26010321	17	1.9	17	88	5	50	20	2	2	73	1.09
26010277--26010326	19	2.6	19	78	15	57	24	4	6	66	1.32
26017486--26017557	35	2.1	34	84	2	90	30	6	16	45	1.74
26018430--26018463	11	3.1	11	82	0	50	67	2	2	26	1.19
26022716--26022753	18	2.1	18	85	9	51	34	0	0	65	0.93
26023024--26023070	24	2.0	24	84	16	62	36	2	4	57	1.30
26024607--26024707	50	2.0	50	96	0	184	39	19	9	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26033387--26033486	52	1.9	52	87	0	146	40	3	7	50	1.45
26036574--26036648	34	2.2	34	90	0	114	17	30	4	48	1.66
26048422--26048487	33	2.0	33	100	0	132	45	18	12	24	1.83
26051283--26051330	23	2.0	26	84	12	66	25	2	10	62	1.38
26054095--26054194	42	2.4	42	93	3	168	15	20	15	50	1.79
26054359--26054405	17	2.8	16	75	12	58	29	0	0	70	0.88
26054362--26054402	18	2.3	18	82	0	55	21	0	0	78	0.76
26058480--26058512	17	1.9	17	100	0	66	24	12	33	30	1.91
26059126--26059403	53	5.3	53	83	3	285	34	21	15	28	1.94
26059126--26059377	106	2.4	106	85	3	328	34	22	14	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144