genome.fa.s7.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  130  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32203168--32203268	6	16.8	6	90	0	85	5	50	16	26	1.68
32207491--32207535	23	2.0	22	82	4	54	24	35	17	22	1.95
32221278--32221332	7	7.9	7	83	0	65	58	1	0	40	1.09
32232666--32232700	6	5.8	6	96	0	52	0	11	65	22	1.24
32235914--32235953	19	2.0	20	86	13	57	35	0	12	52	1.39
32240783--32240823	18	2.4	17	84	8	57	43	14	12	29	1.82
32242014--32242075	14	4.3	14	74	11	54	30	1	0	67	1.00
32242014--32242076	22	2.9	22	83	4	74	31	1	0	66	1.01
32245930--32245954	7	3.6	7	100	0	50	0	0	12	88	0.53
32254001--32254780	389	2.0	388	91	1	1276	36	15	17	30	1.91
32266173--32266224	27	1.9	26	84	7	68	51	11	1	34	1.49
32266968--32266998	16	1.9	16	93	0	53	29	6	3	61	1.37
32267555--32267600	14	3.0	15	77	22	51	52	0	0	47	1.00
32275758--32275793	15	2.4	16	90	9	58	63	0	5	30	1.17
32275787--32275821	15	2.3	15	100	0	70	74	0	5	20	1.02
32282639--32282696	30	1.9	30	89	3	89	37	10	0	51	1.36
32283423--32283470	21	2.3	21	82	10	55	54	0	8	37	1.31
32284545--32284585	21	1.9	22	90	5	66	48	7	17	26	1.73
32284545--32284600	21	2.6	21	83	8	60	51	5	16	26	1.65
32294166--32294206	14	3.0	14	92	3	66	63	0	2	34	1.08
32298780--32298957	89	2.0	89	100	0	356	38	15	19	26	1.92
32321203--32321281	35	2.3	34	89	4	124	34	15	18	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32322335--32322363	3	9.7	3	100	0	58	68	0	31	0	0.89
32323598--32323637	21	1.9	21	90	10	64	55	7	12	25	1.63
32325116--32325178	29	2.1	30	85	2	83	52	9	6	31	1.59
32336423--32336453	3	10.3	3	100	0	62	0	35	0	64	0.94
32343297--32343974	357	1.9	366	86	4	998	39	7	6	47	1.57
32346808--32346847	18	2.2	19	86	4	55	82	5	10	2	0.91
32359978--32360062	21	4.3	21	81	14	108	5	23	34	36	1.79
32359992--32360062	37	1.9	37	94	0	124	7	26	33	32	1.83
32360013--32360043	16	1.9	16	100	0	62	6	32	41	19	1.77
32359992--32360083	37	2.5	37	87	0	121	7	22	34	34	1.83
32359999--32360107	37	2.9	37	81	0	92	10	21	33	34	1.87
32361350--32361387	3	12.7	3	100	0	76	34	0	0	65	0.93
32363368--32363484	23	5.1	23	90	4	123	11	24	23	40	1.87
32363380--32363538	23	7.0	23	81	5	137	11	23	24	40	1.88
32364832--32364880	13	3.6	14	78	13	50	44	2	12	40	1.53
32365652--32365680	5	5.8	5	100	0	58	20	41	17	20	1.90
32366832--32366863	3	10.7	3	100	0	64	31	34	0	34	1.58
32370680--32370705	3	8.7	3	100	0	52	30	34	0	34	1.58
32372818--32372863	2	23.0	2	100	0	92	50	0	0	50	1.00
32377472--32377534	6	10.5	6	92	0	99	47	0	31	20	1.51
32384375--32384406	16	2.0	16	93	0	55	28	6	0	65	1.16
32385003--32385044	19	2.2	20	86	4	59	57	7	11	23	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32394276--32394308	15	2.1	16	88	5	50	12	45	0	42	1.41
32397252--32397298	24	2.0	24	86	0	67	46	27	4	21	1.69
32397247--32397304	14	4.1	14	77	0	71	46	31	3	18	1.66
32398085--32398148	20	3.4	19	82	6	85	40	0	0	59	0.97
32402232--32402286	21	2.6	21	97	0	101	27	29	12	30	1.93
32402845--32402890	24	1.9	24	100	0	92	19	4	13	63	1.46
32404431--32404494	14	4.8	13	75	12	51	40	26	4	28	1.76
32407527--32407588	21	2.9	21	68	22	56	45	14	9	30	1.77
32408331--32408364	2	17.0	2	100	0	68	50	0	0	50	1.00
32415222--32415285	30	2.1	31	88	8	96	48	1	0	50	1.10
32419025--32419086	31	2.0	31	84	3	81	51	6	1	40	1.37
32420755--32420846	12	7.8	12	73	7	53	9	6	16	67	1.40
32420743--32420842	36	2.8	35	75	18	100	10	7	14	69	1.37
32420670--32420841	22	7.7	23	73	10	90	9	6	16	67	1.39
32420690--32420842	24	6.8	23	73	10	88	9	6	16	66	1.41
32430846--32430925	31	2.7	28	75	16	81	36	13	11	38	1.81
32431068--32431147	29	2.6	30	84	5	90	46	15	7	31	1.73
32434546--32434606	18	3.3	18	80	15	63	68	0	0	31	0.89
32434554--32434601	9	5.0	10	80	16	57	68	0	0	31	0.90
32438638--32438746	31	3.7	29	76	6	87	27	13	11	47	1.77
32441250--32441277	6	4.7	6	100	0	56	50	17	0	32	1.47
32466450--32466480	14	2.2	14	94	0	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32488107--32488151	20	2.3	19	84	3	54	42	4	0	53	1.21
32489326--32489385	16	3.8	16	93	0	102	41	0	28	30	1.56
32489324--32489395	16	4.5	16	87	3	92	38	2	27	30	1.71
32489377--32489475	49	2.0	51	86	7	141	31	4	27	37	1.75
32489561--32489722	58	2.8	59	82	7	197	52	1	1	43	1.22
32492789--32492819	2	15.5	2	100	0	62	51	0	0	48	1.00
32513155--32513209	19	2.8	19	83	8	58	60	3	1	34	1.25
32513173--32513211	12	3.2	12	82	7	51	61	2	0	35	1.10
32513168--32513216	25	2.0	25	88	8	73	59	4	0	36	1.17
32513628--32513659	17	2.0	17	88	11	50	46	6	6	40	1.54
32514812--32514875	20	3.4	18	70	20	51	40	0	3	56	1.15
32518184--32519433	362	3.5	362	89	1	1817	39	12	14	34	1.83
32527814--32527966	70	2.2	71	90	1	245	32	20	20	26	1.97
32528913--32528964	26	1.9	28	88	7	81	57	9	0	32	1.31
32549624--32549695	36	2.0	36	94	0	126	50	22	16	11	1.77
32553560--32553602	21	2.0	22	95	4	79	51	2	0	46	1.13
32553557--32553603	13	3.9	13	71	28	50	53	2	0	44	1.12
32554387--32554429	18	2.4	18	88	7	61	53	0	0	46	1.00
32554950--32555001	23	2.2	23	79	3	59	57	17	17	7	1.62
32554951--32554995	23	1.9	23	86	4	63	53	20	20	6	1.67
32556018--32556078	29	2.1	28	82	8	70	55	16	1	26	1.50
32565735--32565767	7	4.9	7	85	7	50	84	0	0	15	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32575814--32575855	14	3.1	14	77	16	52	50	2	0	47	1.14
32576361--32576432	21	3.2	21	68	21	65	52	19	6	20	1.68
32576363--32576442	26	3.3	26	62	31	68	55	20	5	20	1.62
32576347--32576444	46	2.1	46	86	5	142	55	19	6	19	1.64
32576964--32577015	18	2.9	18	83	8	70	38	11	7	42	1.70
32581095--32581132	17	2.2	17	95	0	67	47	23	10	18	1.79
32584065--32584118	27	2.0	28	96	3	101	51	11	1	35	1.48
32584151--32584191	18	2.3	18	87	4	57	34	9	4	51	1.56
32584531--32584659	65	2.0	65	89	3	197	31	30	19	19	1.96
32585927--32585958	6	5.3	6	100	0	64	84	0	15	0	0.63
32596669--32596734	31	2.1	32	88	2	98	53	3	1	42	1.25
32598153--32598199	17	2.7	18	86	6	60	10	10	65	12	1.46
32608252--32608348	31	3.1	31	83	1	113	55	0	4	40	1.19
32612223--32612247	3	8.3	3	100	0	50	68	0	0	32	0.90
32618477--32618515	3	13.3	3	89	5	62	71	0	0	28	0.86
32619430--32619458	11	2.7	11	94	5	51	27	0	0	72	0.85
32632016--32632058	15	2.6	17	83	16	56	34	0	0	65	0.93
32638544--32638604	26	2.3	27	94	2	106	49	0	1	49	1.10
32639788--32639882	24	3.8	24	67	15	66	28	3	3	65	1.23
32654138--32654205	30	2.3	30	85	10	86	55	0	0	44	0.99
32654186--32654216	16	1.9	16	93	0	53	45	0	0	54	0.99
32661100--32661200	43	2.3	43	100	0	202	23	17	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32674857--32674881	7	3.6	7	100	0	50	28	0	24	48	1.52
32676255--32676316	30	2.1	29	93	3	106	54	1	1	41	1.19
32676554--32676579	3	8.7	3	100	0	52	69	0	0	30	0.89
32690587--32690721	60	2.2	60	80	7	148	48	6	0	45	1.29
32690622--32690734	60	1.9	60	85	3	156	47	7	0	45	1.30
32691004--32691029	4	6.5	4	100	0	52	76	0	0	23	0.78
32708179--32708232	22	2.5	22	71	0	54	64	14	5	14	1.45
32708216--32708258	21	2.0	21	86	0	59	67	18	2	11	1.32
32708347--32708401	17	3.3	16	76	21	51	34	10	0	54	1.36
32709611--32709749	60	2.3	61	84	7	185	24	17	17	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144