genome.fa.s7.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  36  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9147940--9147980	17	2.4	18	76	12	50	51	2	0	46	1.14
9148653--9148694	19	2.2	20	91	4	68	47	2	4	45	1.36
9150786--9150959	30	5.8	30	77	10	151	35	4	23	36	1.74
9150786--9150960	60	2.9	60	76	10	180	36	4	23	36	1.74
9152057--9152102	3	15.0	3	86	4	65	39	0	0	60	0.97
9152815--9152875	17	3.6	17	72	0	59	54	9	3	32	1.50
9152817--9152883	34	2.0	33	82	11	82	52	8	4	34	1.53
9153199--9153872	209	3.2	209	91	0	1114	22	22	18	36	1.95
9155883--9155945	17	3.7	17	71	0	63	52	9	3	34	1.50
9155882--9155957	34	2.2	33	81	9	91	52	7	3	35	1.49
9175012--9175156	72	2.0	72	97	2	274	26	23	17	33	1.96
9177396--9177492	41	2.4	41	79	8	117	40	16	20	22	1.91
9177413--9177487	20	3.7	21	85	3	100	37	18	21	22	1.94
9177413--9177479	7	9.7	7	78	3	64	37	17	20	23	1.94
9186777--9186819	11	3.8	11	80	17	52	69	0	0	30	0.88
9187320--9187603	142	2.0	142	100	0	568	35	9	7	47	1.64
9194101--9194339	52	4.6	52	81	4	286	25	12	25	36	1.91
9194100--9194339	104	2.3	104	82	4	315	25	12	25	36	1.91
9207193--9207244	20	2.6	20	87	0	68	28	11	30	28	1.92
9207393--9207458	33	2.0	33	82	5	80	36	22	7	33	1.83
9210319--9210372	20	2.7	20	85	0	63	27	9	31	31	1.88
9212614--9212753	60	2.3	60	85	2	183	46	13	17	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9213031--9213105	29	2.5	30	87	8	109	44	1	0	54	1.08
9218741--9218778	19	2.0	19	89	0	58	15	26	10	47	1.78
9223418--9223443	11	2.4	11	100	0	52	38	0	0	61	0.96
9226464--9226792	110	3.0	110	79	0	343	34	17	20	27	1.95
9226975--9227176	69	2.9	69	85	2	289	41	18	8	31	1.81
9231258--9231346	21	4.0	22	69	23	78	66	22	2	8	1.31
9231306--9231366	11	5.5	11	75	7	52	63	31	1	3	1.20
9242693--9242798	37	2.9	37	85	0	131	26	30	18	24	1.98
9242878--9242930	26	2.0	26	88	0	79	26	20	22	30	1.98
9248347--9248392	18	2.6	18	89	6	67	10	34	10	43	1.75
9263083--9263141	21	2.8	21	79	7	57	32	22	16	28	1.96
9268499--9268557	22	2.7	22	73	5	57	38	15	5	40	1.69
9268499--9268671	44	3.9	44	84	3	186	39	17	6	35	1.76
9268563--9268628	12	5.8	12	75	13	50	43	18	3	34	1.65
9268518--9268622	22	4.8	22	73	2	104	41	18	6	33	1.76
9271692--9271717	6	4.3	6	100	0	52	34	19	30	15	1.93
9278778--9278847	22	3.2	22	72	0	77	35	18	8	37	1.82
9278778--9278908	44	3.0	44	90	0	199	38	18	7	35	1.79
9278788--9278857	22	3.2	22	72	0	77	38	18	8	34	1.81
9279000--9279041	16	2.7	16	77	3	50	23	23	11	40	1.88
9281467--9281510	22	2.0	22	100	0	88	40	27	4	27	1.75
9285115--9285174	26	2.3	26	76	0	66	41	3	3	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9287060--9287128	30	2.4	29	80	7	77	40	1	7	50	1.39
9288348--9288391	22	2.0	22	86	4	63	36	20	13	29	1.91
9289904--9289966	31	2.0	32	84	9	85	46	9	0	44	1.36
9303391--9303415	13	1.9	13	100	0	50	48	16	12	24	1.79
9309795--9309855	3	20.7	3	96	3	115	68	0	0	31	0.89
9309917--9310098	30	6.1	30	77	6	163	32	5	23	38	1.78
9309917--9310098	59	3.1	58	82	6	195	32	5	23	38	1.78
9309917--9310092	29	6.0	27	71	14	84	32	5	22	39	1.78
9312015--9312128	50	2.3	50	89	0	165	21	24	19	34	1.96
9312493--9312524	12	2.7	12	90	0	55	53	12	6	28	1.62
9323514--9323559	20	2.3	20	84	0	56	69	10	6	13	1.35
9323682--9323893	30	7.1	29	78	9	176	32	5	24	38	1.77
9324855--9324903	25	1.9	25	84	12	64	44	4	18	32	1.68
9325377--9325425	18	2.7	17	78	12	53	67	6	4	22	1.30
9325420--9325462	12	3.5	12	81	15	52	65	2	6	25	1.30
9325433--9325478	20	2.3	20	84	0	56	69	6	6	17	1.32
9325601--9325760	58	2.7	59	80	12	159	32	4	24	38	1.75
9325593--9325759	88	1.9	88	85	6	230	32	4	23	39	1.76
9325592--9325764	30	5.9	30	82	8	194	31	4	23	39	1.75
9325689--9325783	30	3.2	30	82	8	88	34	5	21	38	1.76
9326492--9326537	6	7.7	6	88	9	67	82	2	0	15	0.76
9326501--9326536	11	3.2	11	92	4	54	83	2	0	13	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9326492--9326531	17	2.2	19	91	8	66	82	0	0	17	0.67
9326492--9326545	23	2.3	23	83	6	63	79	1	3	14	0.95
9332916--9333007	27	3.4	27	78	0	103	19	23	17	39	1.92
9333031--9333270	67	3.6	67	82	1	293	23	22	17	36	1.94
9335213--9335336	63	2.0	62	95	1	221	30	19	18	31	1.96
9338170--9338304	20	6.7	20	71	14	71	38	13	7	40	1.72
9338186--9338218	10	3.3	10	91	0	57	42	9	6	42	1.61
9342623--9342673	24	2.2	24	77	19	56	11	39	1	47	1.52
9348137--9348168	15	2.1	15	94	0	55	34	21	6	37	1.79
9353641--9353690	25	1.9	27	84	8	68	52	4	26	18	1.63
9358296--9358339	19	2.3	19	88	7	63	22	25	29	22	1.99
9365240--9365331	19	4.8	19	85	2	114	29	21	25	23	1.99
9365240--9365331	38	2.4	38	90	0	148	29	21	25	23	1.99
9369408--9369442	16	2.2	16	100	0	70	11	40	22	25	1.88
9369408--9369451	16	2.8	16	89	6	54	18	36	22	22	1.95
9371704--9371910	104	2.0	104	89	0	315	33	15	4	45	1.68
9377865--9377893	12	2.3	13	94	5	51	72	3	17	6	1.21
9381420--9381558	47	3.2	42	78	11	154	29	5	8	56	1.53
9381679--9382424	77	9.7	77	85	3	898	34	11	8	45	1.71
9388855--9388893	20	2.0	20	85	10	53	38	7	0	53	1.30
9407506--9407544	20	2.0	20	85	10	53	38	7	0	53	1.30
9408798--9408836	21	1.9	20	84	5	51	23	17	15	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9418643--9418852	54	3.8	58	79	12	208	34	5	7	52	1.52
9423179--9423241	29	2.2	29	82	5	74	50	28	9	11	1.69
9427437--9427480	22	2.0	22	82	8	54	15	13	34	36	1.87
9430614--9430706	46	2.0	46	93	0	159	32	17	11	38	1.86
9431106--9431292	45	4.1	45	84	5	227	29	25	18	26	1.98
9432103--9432144	16	2.7	15	85	7	57	11	0	7	80	0.88
9432097--9432144	16	3.1	16	84	3	53	12	0	6	81	0.87
9432286--9432313	11	2.5	11	100	0	56	17	7	7	67	1.37
9432410--9432460	15	3.3	15	78	13	50	33	1	0	64	1.05
9433245--9433290	21	2.2	21	84	7	58	23	21	32	21	1.98
9446096--9446141	13	3.6	12	83	13	56	78	0	19	2	0.86
9447663--9447692	14	2.2	14	94	5	53	30	23	10	36	1.87
9449544--9449580	6	5.8	6	87	12	56	78	2	18	0	0.87
9449544--9449580	13	2.9	12	88	11	56	78	2	18	0	0.87
9451170--9451200	16	1.9	16	100	0	62	58	29	12	0	1.35
9451304--9451351	26	1.9	26	83	8	64	33	22	0	43	1.54
9457958--9457990	11	2.8	12	90	9	59	15	18	15	51	1.77
9458081--9458161	23	3.5	23	75	12	94	35	12	16	35	1.86
9458162--9458194	15	2.1	16	88	5	50	57	15	9	18	1.63
9459495--9459759	134	2.0	134	81	4	311	47	9	6	36	1.63
9460422--9460469	21	2.2	22	81	3	62	54	0	2	43	1.12
9461075--9461122	23	2.1	23	100	0	96	33	4	22	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9461786--9461899	25	4.6	25	83	0	138	28	15	22	32	1.95
9461786--9461883	50	2.0	50	91	0	160	27	18	22	31	1.97
9464957--9465011	26	2.1	25	80	12	58	40	10	14	34	1.81
9472647--9473513	433	2.0	433	96	0	1608	35	17	16	29	1.92
9480057--9480107	18	2.6	21	75	18	63	17	11	11	58	1.62
9503639--9503676	19	2.0	20	84	5	51	28	7	10	52	1.64
9504392--9504423	2	16.0	2	100	0	64	50	0	0	50	1.00
9506759--9506791	2	16.5	2	93	0	57	45	0	3	51	1.16
9525566--9525603	19	2.0	19	85	10	51	34	5	7	52	1.53
9528511--9528955	206	2.2	206	84	1	563	31	20	16	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144