genome.fa.s7.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  49  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10306120--10306280	62	2.6	61	86	3	214	26	19	17	37	1.93
10305536--10306493	340	2.8	338	85	3	1219	27	17	15	38	1.91
10306215--10306714	215	2.3	215	82	4	616	30	17	14	37	1.90
10307588--10307727	62	2.2	61	81	9	158	26	19	15	38	1.91
10307681--10308175	215	2.3	216	82	3	624	30	18	13	37	1.90
10308114--10308293	62	2.9	62	91	0	297	23	20	17	38	1.93
10308480--10308639	62	2.6	61	85	4	203	26	19	16	37	1.93
10307896--10308853	340	2.8	338	85	3	1246	27	18	15	38	1.91
10308575--10309069	215	2.3	214	82	5	606	29	17	14	37	1.90
10307317--10310965	894	4.1	894	96	0	6692	27	19	15	38	1.91
10309008--10309187	62	2.9	61	89	2	270	23	20	18	37	1.94
10309376--10309515	62	2.3	62	80	9	144	26	18	16	38	1.92
10308790--10309740	340	2.8	340	82	4	1136	27	18	15	38	1.91
10309469--10309963	215	2.3	215	83	6	619	29	18	14	37	1.91
10309902--10310081	62	2.9	61	90	2	279	23	20	18	38	1.93
10310300--10310426	62	2.0	62	80	5	141	28	22	14	35	1.93
10309684--10310601	340	2.7	339	83	3	1136	27	18	15	38	1.91
10310363--10310857	215	2.3	215	82	5	617	29	19	14	37	1.91
10310796--10311212	62	6.7	62	89	2	642	26	19	15	37	1.92
10311383--10311612	62	3.7	62	89	2	356	25	19	15	40	1.91
10311383--10311612	122	1.9	124	89	1	365	25	19	15	40	1.91
10311808--10311966	62	2.6	61	84	1	201	26	21	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10310983--10311966	400	2.5	400	89	3	1518	26	19	15	38	1.91
10311442--10312180	338	2.2	337	84	4	943	27	18	14	39	1.90
10311920--10312396	214	2.2	214	81	4	557	28	19	14	37	1.91
10312343--10312500	62	2.5	62	93	0	280	22	19	17	39	1.92
10312672--10312860	62	3.0	61	82	7	229	27	18	16	37	1.93
10312117--10315551	340	10.2	340	71	13	2244	27	18	15	38	1.91
10313011--10313200	64	3.1	61	85	6	258	26	17	16	39	1.91
10313382--10313540	62	2.6	61	81	4	183	24	18	18	38	1.93
10312117--10314410	680	3.4	676	80	9	2477	27	18	15	38	1.91
10313639--10314096	216	2.1	215	83	4	564	27	19	15	37	1.92
10314571--10314880	62	5.0	62	90	0	467	27	18	15	38	1.91
10315084--10315189	54	2.0	54	84	3	142	23	17	16	41	1.90
10315364--10315675	62	5.0	62	92	0	473	27	17	16	38	1.91
10314351--10316210	795	2.3	790	89	4	2752	27	18	15	38	1.90
10316366--10316675	62	5.0	62	90	1	453	27	18	14	39	1.90
10316879--10316991	54	2.1	54	83	3	138	25	19	15	38	1.92
10316944--10317440	215	2.3	217	81	4	567	28	17	14	38	1.89
10317386--10317688	62	4.9	62	89	0	446	27	19	15	38	1.91
10318378--10318686	123	2.5	124	89	1	469	27	18	15	38	1.91
10318378--10318686	62	5.0	62	90	0	458	27	18	15	38	1.91
10318889--10318994	54	2.0	54	84	3	142	23	17	16	41	1.90
10318498--10319356	331	2.5	332	81	6	1041	27	17	15	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10319169--10319480	62	5.0	62	91	1	466	27	17	16	38	1.91
10318158--10320015	794	2.3	789	88	4	2734	27	18	15	38	1.91
10320171--10320464	62	4.6	63	82	7	360	26	19	14	40	1.89
10320171--10320464	132	2.3	124	89	4	435	26	19	14	40	1.89
10320345--10320488	62	2.3	62	87	3	227	29	20	13	36	1.91
10320692--10320804	54	2.1	54	83	3	138	25	19	15	38	1.92
10320757--10321253	215	2.3	217	81	4	567	28	17	14	38	1.89
10321199--10321501	62	4.9	62	90	0	464	26	19	14	38	1.91
10322192--10322501	62	5.0	62	89	0	433	27	19	14	38	1.90
10318954--10339974	1000	20.8	1000	89	4	31637	27	18	14	38	1.91
10323190--10323499	62	5.0	62	91	0	469	26	19	16	38	1.92
10323680--10323831	54	2.6	60	75	19	165	24	19	17	38	1.93
10324034--10324146	54	2.1	54	83	6	140	24	19	18	37	1.94
10324319--10324628	62	5.0	62	94	0	503	27	18	15	38	1.91
10325317--10325626	62	5.0	62	89	0	433	27	19	14	38	1.90
10326337--10326639	62	4.9	62	90	0	464	27	19	14	38	1.91
10327330--10327639	62	5.0	62	91	0	451	27	18	15	38	1.91
10328350--10328652	62	4.9	62	90	0	464	27	19	14	38	1.91
10329343--10329652	62	5.0	62	90	0	442	27	18	14	38	1.90
10330363--10330665	62	4.9	62	90	0	464	27	19	14	38	1.91
10331356--10331665	62	5.0	62	89	0	433	27	19	14	38	1.90
10332376--10332678	62	4.9	62	90	0	464	27	19	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10333369--10333678	62	5.0	62	90	0	442	27	18	14	38	1.90
10334389--10334691	62	4.9	62	90	0	464	27	19	14	38	1.91
10335382--10335691	62	5.0	62	90	0	442	27	18	14	38	1.90
10335960--10336455	215	2.3	216	80	5	556	29	17	14	38	1.89
10336401--10336703	62	4.9	62	90	0	464	27	19	14	38	1.91
10337394--10337703	62	5.0	62	91	0	460	27	18	15	38	1.91
10338392--10338701	62	5.0	62	93	0	487	26	18	16	38	1.91
10338904--10339016	54	2.1	54	85	3	147	23	19	16	39	1.91
10338969--10339465	215	2.3	217	83	4	628	29	18	13	38	1.90
10339404--10339711	62	5.0	62	91	1	485	27	18	15	38	1.91
10339463--10340451	401	2.5	400	91	2	1547	26	19	15	38	1.92
10339865--10340109	62	4.0	62	91	1	368	26	20	15	37	1.92
10339184--10341461	463	4.9	462	70	12	1631	27	18	15	37	1.91
10340299--10340445	62	2.4	63	81	4	156	24	20	16	38	1.92
10340391--10340882	215	2.3	215	81	4	555	29	18	13	38	1.89
10340821--10341129	62	5.0	62	93	0	494	27	19	15	37	1.92
10340821--10341129	123	2.5	123	91	1	492	27	19	15	37	1.92
10341310--10341462	54	2.6	60	76	16	174	24	20	16	37	1.94
10341397--10341870	215	2.2	218	84	5	613	28	18	13	39	1.89
10341833--10342170	62	5.5	61	90	3	461	26	18	15	38	1.91
10342519--10342627	56	2.0	54	85	3	146	41	18	17	22	1.90
10342834--10343076	61	4.0	60	90	4	339	39	17	18	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10343486--10343642	62	2.5	62	76	5	149	40	15	18	25	1.90
10343783--10344032	62	4.0	62	86	4	349	38	15	18	27	1.91
10343783--10344010	126	1.8	126	91	0	375	39	14	18	27	1.90
10344408--10344592	62	3.0	62	78	6	189	41	15	18	24	1.90
10344740--10344978	62	3.9	62	89	1	365	38	15	17	27	1.90
10344740--10344974	122	1.9	124	91	1	384	38	15	17	27	1.91
10344944--10345414	213	2.2	214	82	5	551	38	14	18	29	1.90
10345370--10345476	54	2.0	54	87	3	153	40	18	18	22	1.92
10345685--10345932	62	4.0	61	90	5	358	39	16	18	25	1.91
10346296--10346484	60	3.1	60	77	6	200	40	15	19	24	1.90
10346638--10346885	62	4.0	62	91	0	388	37	15	18	28	1.91
10346844--10347319	214	2.2	218	81	8	562	39	14	17	29	1.88
10347273--10347381	54	2.0	55	83	7	141	41	18	18	22	1.91
10347602--10347837	63	3.8	64	88	6	349	39	16	19	24	1.92
10348234--10348401	62	2.7	62	79	2	194	41	16	17	23	1.89
10348553--10348798	61	4.0	62	89	2	370	36	15	18	28	1.92
10349188--10349294	54	2.0	54	85	3	144	39	19	18	22	1.93
10349500--10349744	61	4.0	61	90	4	379	37	16	19	26	1.93
10349500--10349744	121	2.0	122	89	4	379	37	16	19	26	1.93
10342352--10355388	947	13.7	951	89	5	19063	38	15	18	27	1.91
10350122--10350304	63	3.0	62	80	3	208	39	16	19	25	1.91
10350452--10350698	62	4.0	62	88	3	363	38	15	18	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10350452--10350698	123	2.0	124	90	2	390	38	15	18	27	1.91
10350657--10351129	212	2.2	217	82	6	588	38	14	17	29	1.89
10352042--10352210	61	2.7	62	81	6	198	42	15	18	23	1.88
10352384--10352617	62	3.8	62	86	8	323	38	16	18	26	1.91
10352384--10352617	124	1.9	124	88	5	357	38	16	18	26	1.91
10352558--10353051	216	2.3	215	80	7	538	37	14	18	29	1.90
10353002--10353116	54	2.1	55	88	1	169	38	16	19	26	1.92
10353316--10353562	62	4.0	62	90	3	372	38	16	18	27	1.91
10353316--10353562	123	2.0	124	89	2	381	38	16	18	27	1.91
10353947--10354060	54	2.1	55	86	3	160	38	15	20	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144