genome.fa.s7.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  128  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31457553--31457615	16	3.8	17	70	6	58	55	6	0	38	1.25
31458355--31458381	3	9.0	3	100	0	54	33	0	0	66	0.92
31462464--31462500	7	5.6	7	90	6	51	51	0	5	43	1.24
31462642--31462679	20	1.9	20	94	0	67	39	10	2	47	1.52
31463168--31463202	2	17.5	2	100	0	70	48	0	0	51	1.00
31465279--31465343	31	2.1	31	83	11	80	33	3	1	61	1.21
31474002--31474034	3	11.0	3	100	0	66	66	0	0	33	0.92
31479788--31479817	14	2.1	14	93	0	51	56	0	0	43	0.99
31487266--31487292	6	4.5	6	100	0	54	33	0	0	66	0.92
31495216--31495249	14	2.5	13	86	9	50	85	14	0	0	0.60
31509716--31509751	18	1.9	19	88	5	56	36	8	11	44	1.70
31511099--31511144	21	2.2	20	84	3	56	65	2	10	21	1.35
31514705--31514740	15	2.4	15	95	0	63	44	16	38	0	1.48
31515476--31515527	18	2.6	21	73	17	56	40	17	40	1	1.60
31515482--31515521	18	2.2	18	90	0	62	42	12	42	2	1.56
31515765--31515839	33	2.3	33	95	0	132	25	16	26	32	1.96
31516150--31516178	5	5.8	5	100	0	58	0	0	20	79	0.74
31524685--31524892	103	2.0	103	100	0	416	29	21	15	34	1.94
31579231--31579396	82	2.0	82	89	0	251	48	6	9	34	1.62
31594494--31594543	26	1.9	26	84	15	68	48	0	4	48	1.20
31596034--31596069	18	2.0	18	94	0	63	52	2	0	44	1.15
31596142--31596344	93	2.2	92	81	7	241	49	7	11	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31596142--31596361	94	2.4	92	79	9	236	51	6	10	30	1.62
31596805--31596843	18	2.1	19	85	4	53	58	0	5	35	1.20
31597157--31597198	21	2.0	22	85	4	59	59	2	2	35	1.23
31598893--31598955	30	2.1	30	85	5	83	34	0	9	55	1.32
31599636--31599670	6	5.8	6	100	0	70	17	48	17	17	1.81
31606816--31606859	2	22.0	2	100	0	88	50	0	0	50	1.00
31612458--31612491	16	2.1	17	88	5	52	67	0	0	32	0.91
31617750--31617780	5	6.2	5	100	0	62	80	0	0	19	0.71
31621052--31621081	16	1.9	16	93	6	53	40	20	0	40	1.52
31621902--31621952	19	2.7	18	88	8	75	37	1	0	60	1.08
31622549--31622579	3	10.3	3	100	0	62	67	0	0	32	0.91
31628045--31628129	42	2.0	42	100	0	170	32	23	9	34	1.87
31633384--31633409	4	6.5	4	100	0	52	50	23	0	26	1.50
31639711--31639735	7	3.6	7	100	0	50	44	0	40	16	1.47
31640651--31640705	28	1.9	28	82	10	67	30	0	5	63	1.17
31641803--31641847	21	2.1	21	88	8	65	82	4	0	13	0.82
31648768--31648801	15	2.3	15	89	0	50	52	0	47	0	1.00
31650071--31650242	58	2.9	60	81	6	215	22	18	12	47	1.81
31650130--31650228	31	3.3	30	71	21	91	24	17	13	45	1.83
31652575--31652599	11	2.3	11	100	0	50	56	12	8	24	1.62
31660034--31660074	21	1.9	22	85	14	59	48	0	0	51	1.00
31660084--31660154	22	3.3	22	75	15	76	9	7	16	66	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31660084--31660201	21	5.2	21	72	11	74	10	5	16	67	1.38
31660127--31660201	25	3.1	24	78	7	80	10	6	13	69	1.36
31660162--31660252	12	7.7	12	73	7	69	8	4	18	68	1.34
31660958--31661003	6	7.3	6	92	4	65	60	2	0	36	1.09
31662519--31662562	18	2.4	19	81	14	56	56	2	4	36	1.32
31664858--31665136	30	9.4	29	69	23	174	34	3	28	34	1.73
31664858--31665168	59	5.3	59	90	2	457	33	2	29	34	1.72
31664858--31665138	29	9.5	29	66	19	134	33	3	28	34	1.73
31664851--31665168	118	2.7	117	92	3	505	32	3	30	33	1.75
31664938--31665165	29	7.8	28	70	19	144	33	2	29	34	1.72
31665257--31665574	162	2.0	161	89	1	494	44	12	16	26	1.84
31666451--31666503	3	17.0	3	81	14	63	30	3	0	66	1.10
31666451--31666497	14	2.9	17	78	21	64	29	4	0	65	1.11
31666459--31666502	23	1.9	23	95	0	79	29	4	0	65	1.12
31667171--31667270	52	2.0	51	88	4	148	48	5	2	45	1.36
31667171--31667276	18	6.3	17	71	12	67	47	4	1	46	1.34
31667174--31667245	6	12.5	6	77	14	71	48	2	2	45	1.31
31667171--31667287	52	2.3	50	84	5	146	49	4	1	44	1.32
31667723--31667816	48	2.0	48	97	0	179	26	15	25	31	1.96
31668800--31668837	16	2.4	16	86	8	51	68	5	0	26	1.11
31672703--31672766	30	2.0	33	82	8	80	42	3	3	51	1.33
31672742--31672787	22	2.1	22	84	8	58	43	2	0	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31672992--31673030	21	1.9	20	85	15	53	23	2	2	71	1.10
31672992--31673030	14	2.7	14	88	4	51	23	2	2	71	1.10
31672987--31673035	19	2.5	20	75	18	50	26	2	2	69	1.10
31673251--31673303	26	2.0	27	85	3	72	45	16	3	33	1.66
31676218--31676260	2	21.5	2	100	0	86	48	0	0	51	1.00
31676466--31676513	18	2.5	17	81	18	51	43	0	4	52	1.20
31676465--31676521	23	2.6	21	76	10	60	47	0	3	49	1.18
31676545--31676604	16	3.7	17	77	16	56	55	3	0	41	1.16
31680386--31680531	23	6.3	23	79	9	129	42	21	24	11	1.86
31680386--31680530	69	2.1	66	85	12	186	42	20	24	11	1.86
31691810--31691843	7	4.9	7	100	0	68	58	0	41	0	0.98
31695047--31695130	24	3.5	24	91	0	141	21	20	38	20	1.94
31697453--31697491	12	3.2	12	82	7	51	23	0	5	71	1.05
31713575--31713613	20	2.0	20	89	0	60	41	0	5	53	1.23
31718702--31718741	16	2.6	16	80	4	55	65	7	2	25	1.32
31720372--31720560	51	3.6	51	79	4	191	26	23	16	33	1.95
31725920--31725956	3	12.3	3	94	0	65	67	2	0	29	1.04
31734654--31735083	62	7.2	61	73	11	320	29	19	16	34	1.94
31734642--31734995	175	2.0	173	85	4	480	32	19	16	31	1.94
31734869--31735089	121	1.8	122	83	4	295	28	18	17	35	1.94
31735353--31735600	59	4.1	62	80	9	233	35	12	20	30	1.90
31735360--31735600	120	2.0	121	82	3	297	35	13	20	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31738334--31738372	7	5.6	7	100	0	78	41	0	0	58	0.98
31739322--31739374	13	4.2	13	90	4	90	56	0	13	30	1.37
31739321--31739374	25	2.2	25	96	0	99	55	0	12	31	1.38
31745801--31745853	16	3.2	16	76	13	54	28	3	3	64	1.28
31768189--31768235	23	2.0	24	83	4	60	8	23	2	65	1.31
31780748--31780774	2	13.5	2	100	0	54	51	0	0	48	1.00
31783973--31784008	10	3.6	10	92	0	63	11	50	0	38	1.38
31794736--31794787	22	2.3	22	81	15	61	51	0	1	46	1.12
31804547--31805208	228	2.9	227	82	3	731	30	26	22	20	1.98
31808822--31808886	30	2.1	32	83	8	82	24	13	9	52	1.70
31819146--31819181	2	18.0	2	100	0	72	50	0	0	50	1.00
31819039--31819308	144	1.9	144	100	0	540	37	10	18	33	1.85
31829465--31829517	24	2.3	22	84	9	70	35	0	5	58	1.22
31829467--31829517	23	2.2	23	89	3	75	35	0	5	58	1.22
31834710--31834761	18	2.8	18	75	16	52	26	1	1	69	1.10
31835366--31835390	13	1.9	13	100	0	50	44	0	0	56	0.99
31836676--31836716	21	2.0	21	90	9	66	53	2	0	43	1.13
31846822--31846850	14	2.0	15	93	6	51	41	0	0	58	0.98
31849299--31849364	30	2.2	29	83	2	78	54	9	3	33	1.47
31851086--31851184	23	4.0	25	90	5	89	12	22	23	42	1.87
31851096--31851185	23	3.8	23	92	2	135	12	24	24	38	1.89
31867400--31867460	18	3.4	18	73	13	54	37	4	0	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31883613--31883676	32	2.0	32	81	6	76	18	15	10	54	1.70
31886954--31887004	8	6.2	8	78	13	50	64	0	3	31	1.11
31904322--31904379	19	2.9	21	82	12	68	8	15	0	75	1.02
31904301--31904366	12	5.0	12	72	24	53	12	12	1	74	1.15
31907665--31907733	21	3.3	21	86	8	88	43	5	17	33	1.73
31910127--31910158	2	16.0	2	100	0	64	50	0	0	50	1.00
31918208--31918292	33	2.6	33	85	7	102	36	9	22	31	1.86
31928972--31929070	38	2.5	40	72	9	96	32	28	17	22	1.96
31929488--31929523	18	2.1	18	89	5	56	30	22	2	44	1.67
31942096--31942197	50	2.0	50	92	0	168	44	6	14	34	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144