genome.fa.s7.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  88  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20432165--20432798	200	3.2	199	85	2	858	36	19	22	21	1.95
20435137--20435272	30	4.6	29	71	22	97	34	30	2	33	1.70
20435137--20435330	30	6.6	29	68	25	95	32	30	2	34	1.72
20435137--20435356	60	3.7	60	83	5	256	31	30	2	35	1.70
20440140--20440278	24	5.8	24	92	0	224	26	26	22	24	2.00
20440263--20440365	27	3.8	27	85	1	125	40	22	11	25	1.87
20453519--20453566	17	2.9	16	84	9	60	66	0	6	27	1.15
20458487--20458525	15	2.6	15	79	0	51	15	7	35	41	1.76
20472234--20472269	15	2.4	15	90	9	56	55	5	2	36	1.38
20474370--20474424	24	2.2	24	87	3	74	25	14	9	50	1.72
20482206--20482250	18	2.5	19	82	17	60	68	0	28	2	1.01
20482209--20482250	21	2.0	20	86	13	59	69	0	28	2	1.01
20482640--20482678	16	2.4	16	86	0	51	15	12	7	64	1.49
20490154--20490209	21	2.5	23	80	8	62	66	5	17	10	1.41
20503364--20503418	27	2.0	27	92	0	92	27	12	16	43	1.84
20518420--20518447	11	2.5	11	100	0	56	35	17	0	46	1.49
20520450--20520510	20	3.0	20	72	9	61	11	8	21	59	1.58
20520430--20520522	40	2.3	40	81	3	116	13	12	17	55	1.68
20521584--20521626	13	3.5	13	78	18	56	27	11	20	39	1.88
20550970--20551009	18	2.2	18	86	0	53	25	5	2	67	1.23
20564741--20564765	3	8.3	3	100	0	50	68	0	32	0	0.90
20574647--20574681	13	2.7	13	86	0	52	88	0	11	0	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20597388--20597490	52	2.0	52	92	0	170	21	14	27	36	1.92
20597451--20597526	36	2.1	36	97	0	143	23	13	23	39	1.90
20597399--20597578	88	2.0	88	93	0	306	22	12	26	38	1.90
20597489--20597664	52	3.4	52	95	0	307	20	13	30	35	1.91
20599277--20599340	32	2.0	32	100	0	128	31	3	21	43	1.68
20602199--20602223	12	2.1	12	100	0	50	60	8	0	32	1.26
20602759--20602897	31	4.5	31	68	20	103	26	11	10	51	1.71
20603182--20603291	31	3.6	30	76	14	100	49	10	13	27	1.74
20603095--20603291	60	3.2	61	80	7	213	46	11	15	26	1.79
20604175--20604213	20	2.0	20	84	0	51	46	0	5	48	1.24
20604901--20604950	2	25.0	2	100	0	100	50	0	50	0	1.00
20614818--20614886	36	1.9	37	85	5	97	39	8	24	27	1.85
20621400--20621497	49	2.0	49	100	0	196	36	10	8	44	1.68
20622326--20622365	22	1.9	20	90	10	62	45	7	0	47	1.31
20627268--20627307	22	1.9	20	90	10	62	45	7	0	47	1.31
20627953--20627982	14	2.2	13	94	5	51	83	0	3	13	0.77
20632517--20632736	43	5.2	43	76	3	167	20	17	21	39	1.92
20632527--20632736	86	2.5	86	75	4	194	20	17	21	39	1.92
20635056--20635188	53	2.5	53	90	0	203	26	15	24	33	1.95
20636418--20636442	6	4.2	6	100	0	50	0	16	0	84	0.63
20639417--20639443	14	1.9	14	100	0	54	11	29	44	14	1.80
20640436--20640521	11	7.7	11	74	10	50	18	2	10	68	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20640482--20640508	11	2.5	11	100	0	54	22	0	7	70	1.12
20642112--20642238	67	1.9	66	93	1	218	64	8	7	19	1.45
20643100--20643274	7	25.1	7	69	10	54	10	3	43	42	1.55
20643100--20643175	21	3.6	21	75	8	64	9	5	47	38	1.58
20643124--20643213	28	3.2	28	77	10	87	10	4	41	44	1.58
20643132--20643199	35	1.9	35	88	5	102	8	5	42	42	1.60
20643138--20643219	35	2.4	35	79	8	96	7	3	42	46	1.49
20643235--20643309	29	2.6	29	77	10	73	12	0	45	42	1.41
20643423--20643447	13	1.9	13	100	0	50	12	0	32	56	1.36
20643446--20643484	7	5.6	7	87	0	60	28	12	25	33	1.93
20643596--20643648	14	3.8	13	80	14	61	16	1	35	45	1.59
20643587--20643659	35	2.1	34	87	7	103	16	4	38	41	1.67
20649229--20649421	50	3.9	50	80	10	200	42	1	9	47	1.42
20649304--20649337	10	3.1	11	84	16	52	55	0	0	44	0.99
20649229--20649428	98	2.1	97	88	2	294	42	1	9	47	1.43
20649363--20649830	112	4.2	112	90	1	717	43	0	5	49	1.33
20649739--20649794	22	2.5	22	79	0	67	51	0	0	48	1.00
20649804--20649934	8	16.4	8	70	14	74	50	0	2	46	1.19
20649303--20649901	224	2.6	225	81	9	711	44	1	6	48	1.34
20652500--20652549	19	2.7	18	75	9	55	32	2	0	66	1.03
20653592--20653868	41	6.6	41	79	9	238	24	25	24	25	2.00
20653591--20653877	82	3.5	82	78	9	285	23	25	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20653643--20653877	87	2.8	82	79	10	260	24	25	24	25	2.00
20653590--20653868	128	2.2	123	86	3	369	24	25	25	25	2.00
20657943--20658282	118	2.9	116	78	6	344	26	18	25	30	1.98
20665565--20665603	10	3.9	10	83	10	53	82	0	15	2	0.79
20665562--20665603	19	2.2	19	91	8	68	83	0	14	2	0.75
20666339--20666383	23	2.0	23	86	0	63	31	26	20	22	1.98
20666752--20666947	43	4.6	43	79	3	162	21	17	20	39	1.92
20666788--20666945	86	1.8	86	80	2	192	20	17	22	39	1.92
20667725--20667765	22	1.9	21	85	5	55	63	0	9	26	1.25
20675325--20675665	118	2.9	117	82	2	405	25	18	25	30	1.98
20679318--20679366	24	2.0	24	100	0	98	36	8	24	30	1.85
20681529--20681594	33	2.0	33	91	5	107	42	1	21	34	1.62
20684377--20684591	43	5.0	43	78	1	180	29	26	17	26	1.98
20684380--20684591	85	2.5	86	87	0	291	28	26	17	26	1.98
20684556--20684623	32	2.1	32	91	0	109	30	27	13	27	1.94
20690636--20690722	38	2.4	34	77	17	95	41	1	8	49	1.40
20690667--20690691	12	2.1	12	100	0	50	48	0	0	52	1.00
20690703--20690781	8	9.5	8	79	8	68	53	1	2	43	1.22
20690682--20690815	43	2.8	50	75	19	149	44	1	8	46	1.42
20690636--20690815	93	2.0	88	90	7	281	43	1	7	47	1.39
20690770--20690867	26	3.5	26	75	16	88	37	1	10	51	1.43
20690763--20690840	34	2.3	34	90	0	129	41	1	10	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20690856--20690953	8	11.9	8	74	14	83	55	2	3	39	1.27
20690922--20690954	17	1.9	17	100	0	66	54	0	3	42	1.15
20693822--20693931	47	2.3	47	85	0	148	38	0	33	27	1.63
20694283--20694324	22	1.9	22	100	0	84	33	4	14	47	1.65
20695666--20695727	29	2.1	31	81	6	74	30	12	17	38	1.88
20696193--20696277	40	2.1	40	86	0	116	24	20	14	41	1.89
20696200--20696290	40	2.3	40	82	0	101	25	17	13	43	1.85
20700481--20700509	2	15.0	2	92	7	51	48	0	0	51	1.00
20703522--20703709	39	4.8	39	80	0	196	39	17	16	27	1.90
20703522--20703709	78	2.4	78	84	3	234	39	17	16	27	1.90
20710011--20710148	72	1.9	72	85	2	188	23	19	28	28	1.98
20710528--20710757	39	5.9	39	84	2	264	36	19	19	24	1.94
20710528--20710757	78	2.9	78	84	1	291	36	19	19	24	1.94
20710528--20710755	117	1.9	117	86	0	321	36	18	19	24	1.94
20711124--20711159	12	3.0	12	87	0	54	22	11	36	30	1.89
20714085--20714152	34	1.9	37	82	14	90	17	2	8	70	1.25
20730576--20730645	31	2.2	33	82	12	83	40	1	18	40	1.60
20730576--20730642	34	1.9	34	82	11	82	41	1	19	37	1.61
20731262--20731472	30	7.2	28	70	22	134	33	26	5	34	1.80
20731146--20731452	29	10.5	32	70	16	186	32	23	4	39	1.75
20731146--20731453	59	5.3	58	82	8	333	32	23	4	39	1.75
20731146--20731484	116	2.9	116	81	7	287	32	24	5	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20731675--20731965	97	3.0	96	84	5	379	28	17	15	37	1.91
20737489--20738601	49	22.6	49	67	13	256	37	21	25	15	1.92
20737529--20738496	99	9.8	100	83	4	921	37	20	26	15	1.93
20737529--20738470	198	4.8	198	84	4	1100	37	20	25	15	1.93
20737529--20738466	296	3.2	296	86	3	1210	37	20	26	15	1.93
20738424--20738601	97	1.8	96	90	1	284	39	23	24	12	1.89
20738600--20738939	48	7.0	48	79	2	311	41	24	23	11	1.86
20738600--20738934	98	3.4	98	86	0	422	41	24	22	11	1.87
20739076--20739268	101	1.9	101	88	2	289	33	15	18	33	1.91
20739793--20739863	17	4.2	17	77	0	79	39	4	4	52	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144