genome.fa.s2.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  10  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3403738--3403767	14	2.1	14	93	0	51	36	0	13	50	1.42
3414385--3414431	24	2.0	24	83	4	60	40	10	8	40	1.70
3420145--3420188	22	2.0	22	90	0	70	11	20	25	43	1.85
3420282--3420515	43	5.3	43	84	9	283	32	24	17	25	1.97
3420420--3420514	49	1.9	49	97	0	181	31	24	17	26	1.97
3427758--3427937	73	2.5	72	93	1	297	25	23	23	27	2.00
3427850--3428162	113	2.8	113	90	3	488	27	24	22	25	2.00
3428457--3428482	2	13.0	2	100	0	52	50	0	0	50	1.00
3435798--3435849	19	2.8	19	76	2	61	61	1	1	34	1.18
3445960--3446062	27	3.8	27	87	2	136	19	16	23	40	1.91
3445960--3446066	54	2.0	54	87	3	153	19	16	22	41	1.90
3445960--3446089	27	4.8	27	85	0	134	20	16	21	42	1.89
3456811--3456891	37	2.2	39	82	10	98	35	17	17	29	1.93
3457751--3457794	16	2.6	17	85	3	63	0	27	4	68	1.09
3457834--3457920	5	17.6	5	92	2	149	60	1	0	37	1.04
3460598--3460716	33	3.4	35	67	13	84	63	11	6	17	1.48
3464229--3464288	15	4.1	15	80	8	70	35	41	8	15	1.77
3464476--3464518	16	2.8	16	85	3	61	16	4	4	74	1.16
3467176--3467206	15	2.0	15	93	6	53	35	0	0	64	0.94
3467319--3467357	20	2.0	20	84	0	51	58	0	2	38	1.12
3470800--3470958	59	2.7	58	80	7	160	22	13	13	49	1.78
3471380--3471449	32	2.2	32	84	0	86	47	14	14	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3473618--3473762	70	2.1	71	98	1	283	53	6	4	35	1.47
3474416--3474477	30	2.1	29	90	3	97	56	11	3	29	1.50
3483749--3483892	73	2.0	73	87	2	209	29	22	16	30	1.96
3485066--3485100	17	2.1	17	94	0	61	54	8	0	37	1.31
3497677--3497771	3	32.7	3	78	10	83	27	5	2	65	1.25
3497743--3497777	18	1.9	18	94	0	61	31	8	5	54	1.54
3498296--3498615	107	3.0	107	89	2	446	31	16	18	33	1.93
3506789--3506972	51	3.6	50	77	4	190	22	16	29	30	1.96
3506986--3507073	45	2.0	45	95	0	158	26	18	22	32	1.97
3509391--3509442	27	1.9	27	92	0	86	30	19	5	44	1.74
3511270--3511317	21	2.3	21	85	0	69	45	10	14	29	1.78
3515654--3515683	7	4.3	7	100	0	60	26	13	26	33	1.93
3518253--3518304	18	2.9	17	80	8	68	21	1	0	76	0.87
3518252--3518338	13	6.2	13	67	21	52	18	3	3	74	1.10
3518253--3518339	35	2.4	36	80	12	99	19	3	3	73	1.12
3532952--3532976	4	6.2	4	100	0	50	76	0	0	24	0.80
3533096--3533120	3	8.3	3	100	0	50	68	0	0	32	0.90
3536097--3536125	14	2.1	14	100	0	58	41	13	6	37	1.72
3536138--3536185	17	2.9	16	87	9	62	37	4	0	58	1.18
3536837--3536889	20	2.9	17	70	24	54	28	16	15	39	1.89
3538462--3538519	9	6.0	9	75	11	53	63	1	5	29	1.25
3538492--3538516	11	2.3	11	100	0	50	76	0	8	16	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3538536--3538576	17	2.3	18	83	8	57	51	4	0	43	1.23
3541123--3541149	12	2.2	12	100	0	54	40	25	7	25	1.82
3544165--3544309	62	2.3	62	85	2	211	43	15	23	17	1.87
3544855--3544913	16	3.4	16	76	15	55	32	8	1	57	1.39
3545325--3545381	27	2.1	27	90	0	87	43	26	14	15	1.85
3545831--3545860	16	1.9	15	93	6	51	16	0	10	73	1.09
3546576--3546647	31	2.2	31	82	9	81	22	6	4	66	1.33
3558626--3558734	45	2.4	45	81	13	127	31	15	27	25	1.96
3558851--3559124	128	2.1	130	89	4	419	28	18	25	28	1.98
3560582--3560653	31	2.2	31	82	9	81	22	6	4	66	1.33
3560751--3560819	24	2.8	25	79	12	72	30	1	5	62	1.27
3571792--3571846	26	2.1	25	80	12	58	36	9	14	40	1.78
3577795--3577838	21	2.1	21	83	8	54	36	2	22	38	1.67
3578173--3578422	25	10.1	25	74	12	169	18	25	19	37	1.94
3578179--3578429	99	2.5	97	80	10	244	18	23	19	37	1.94
3578356--3578421	24	2.7	25	83	6	82	16	25	22	34	1.95
3578357--3578435	25	3.2	25	80	8	65	17	25	22	34	1.96
3580201--3580244	21	2.1	21	83	8	54	36	2	22	38	1.67
3580585--3580728	25	5.8	24	74	11	96	18	22	20	39	1.92
3580584--3580745	50	3.3	50	75	15	149	18	22	18	40	1.92
3580648--3580778	50	2.6	50	81	8	144	19	25	20	35	1.96
3580585--3580801	99	2.2	99	80	8	230	18	23	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3580749--3580827	24	3.2	24	82	8	81	17	26	21	34	1.96
3580762--3580827	24	2.7	25	83	6	82	16	25	22	34	1.95
3580763--3580841	25	3.2	25	80	8	65	17	25	22	34	1.96
3595409--3595445	3	12.3	3	100	0	74	32	0	0	67	0.91
3595637--3595758	42	2.9	42	87	1	172	25	20	20	33	1.97
3600932--3600997	29	2.3	28	79	7	69	59	7	4	28	1.45
3601716--3601745	15	2.1	15	93	6	53	60	26	0	13	1.34
3602360--3602385	2	13.0	2	100	0	52	50	50	0	0	1.00
3604855--3604913	30	2.0	30	96	0	109	45	13	11	28	1.79
3609045--3609382	166	2.0	168	98	1	662	38	19	16	25	1.93
3611257--3611290	1	34.0	1	100	0	68	0	0	0	100	0.00
3614565--3614601	17	2.2	17	100	0	74	29	16	10	43	1.82
3615746--3615789	18	2.4	18	80	3	52	54	13	9	22	1.67
3623482--3623733	2	126.0	2	100	0	504	50	0	0	50	1.00
3624645--3624669	12	2.1	12	100	0	50	24	36	24	16	1.94
3624829--3624921	9	10.2	9	85	6	116	39	26	10	22	1.87
3624868--3624923	19	2.9	19	82	10	62	44	26	10	17	1.82
3629943--3629984	22	2.0	21	86	13	59	19	7	2	71	1.20
3634060--3634127	30	2.3	30	97	0	127	0	1	2	95	0.30
3634059--3634118	1	60.0	1	96	0	111	0	0	1	98	0.12
3637088--3637123	3	12.0	3	100	0	72	66	0	0	33	0.92
3650831--3650885	28	2.0	28	92	0	92	32	5	7	54	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3650870--3652321	716	2.0	712	96	1	2665	31	14	12	41	1.83
3652300--3652343	22	2.0	23	95	4	81	22	9	11	56	1.62
3652692--3652735	23	1.9	23	81	9	54	54	9	2	34	1.44
3653143--3653557	114	3.6	114	97	0	767	32	27	18	22	1.97
3653473--3653641	84	2.0	84	92	0	284	35	27	20	15	1.94
3653359--3653839	198	2.4	198	92	0	809	33	26	19	20	1.96
3653672--3653983	84	3.7	84	96	0	552	36	26	21	15	1.93
3653946--3654017	34	2.1	35	94	2	128	36	31	25	6	1.82
3653862--3654101	118	2.0	119	99	0	473	35	28	21	14	1.92
3656240--3656272	5	6.6	5	100	0	66	18	0	0	81	0.68
3656655--3656699	14	3.1	14	87	6	54	44	2	0	53	1.13
3656725--3656788	22	3.0	21	70	21	53	48	9	1	40	1.45
3662742--3662781	6	6.7	6	86	11	55	0	45	2	52	1.14
3674465--3674522	25	2.4	24	80	11	64	20	5	1	72	1.13
3674479--3674540	6	10.3	6	81	13	58	19	3	1	75	1.02
3674502--3674539	5	7.2	5	88	11	58	18	2	0	78	0.86
3678363--3678401	19	2.1	19	100	0	78	15	38	5	41	1.69
3682568--3682603	17	2.1	18	89	5	56	55	0	0	44	0.99
3688342--3688393	26	2.0	26	92	0	86	51	9	17	21	1.73
3693820--3693849	12	2.4	13	88	11	53	80	0	0	20	0.72
3700235--3700268	16	2.1	16	88	0	50	55	14	2	26	1.53
3706149--3706186	19	2.1	18	85	14	51	47	2	5	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3710281--3710330	24	2.1	24	92	7	84	22	8	26	44	1.80
3710247--3710358	58	1.9	58	89	3	172	19	12	21	46	1.83
3710428--3710495	23	3.0	22	77	16	68	45	0	2	51	1.16
3710720--3710752	15	2.1	16	88	5	50	30	12	0	57	1.35
3710743--3711018	139	2.0	140	92	2	457	41	21	13	23	1.88
3716627--3716659	6	5.7	6	89	3	50	0	18	51	30	1.46
3717192--3717230	20	1.9	20	89	5	60	53	7	10	28	1.62
3722337--3722733	185	2.2	187	87	4	576	27	21	14	36	1.93
3737965--3738071	40	2.7	39	82	5	135	33	8	14	42	1.76
3739605--3739655	23	2.2	23	85	3	66	62	5	0	31	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145