genome.fa.s2.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  112  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37584140--37584183	19	2.4	18	84	3	52	20	0	9	70	1.14
37584768--37584875	31	3.5	30	76	7	110	53	5	0	39	1.30
37584770--37584887	61	1.9	62	89	1	184	52	4	1	41	1.31
37605605--37605634	13	2.2	14	94	5	53	60	6	0	33	1.23
37616779--37616863	43	2.0	43	90	0	134	35	17	15	31	1.91
37620909--37620952	15	2.9	15	89	0	61	9	9	20	61	1.53
37620909--37620952	5	8.8	5	97	0	52	9	9	20	61	1.53
37622537--37622579	21	2.0	21	82	8	52	20	13	2	62	1.42
37623611--37623713	43	2.4	43	95	1	188	47	16	0	34	1.53
37639691--37639742	24	2.2	24	92	0	86	53	5	1	38	1.36
37639833--37639891	29	2.0	29	93	0	100	37	35	6	20	1.79
37640554--37640589	17	2.1	17	100	0	72	55	0	16	27	1.42
37642538--37642683	56	2.5	59	82	10	174	30	21	26	21	1.98
37642748--37642881	67	2.0	66	95	1	241	19	19	33	27	1.96
37647549--37647600	24	2.2	24	92	0	86	51	7	3	36	1.49
37649490--37649521	16	1.9	16	93	6	55	31	0	0	68	0.90
37649578--37649627	25	2.0	25	84	7	66	24	4	0	72	1.02
37661700--37661982	41	6.7	42	71	10	164	32	18	20	28	1.96
37661694--37661982	127	2.3	127	91	0	461	31	19	20	28	1.97
37663336--37663374	20	1.9	21	89	5	62	33	0	2	64	1.08
37663334--37663379	24	1.9	24	82	8	58	34	2	2	60	1.21
37663331--37663393	20	3.3	19	81	14	60	34	4	1	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37669026--37669080	15	3.9	15	79	20	73	41	0	0	58	0.98
37669022--37669086	26	2.5	26	97	2	123	43	0	0	56	0.99
37669022--37669086	15	5.3	11	73	26	51	43	0	0	56	0.99
37671697--37671724	4	7.0	4	100	0	56	75	0	0	25	0.81
37674177--37674210	18	2.0	16	88	11	50	41	0	0	58	0.98
37676213--37676249	18	2.1	19	85	10	51	72	0	0	27	0.84
37677166--37677280	45	2.6	45	82	0	131	46	13	18	21	1.84
37677219--37677549	45	7.4	45	83	6	280	41	17	18	22	1.90
37677219--37677564	90	3.9	90	84	1	390	40	17	19	23	1.91
37677261--37677523	135	1.9	135	89	1	402	39	18	19	22	1.93
37686550--37686644	43	2.2	43	96	0	172	41	18	13	26	1.88
37691369--37691546	52	3.5	51	89	4	245	27	29	15	26	1.96
37696322--37696361	21	1.9	21	84	0	53	32	20	22	25	1.98
37708644--37708669	11	2.4	11	100	0	52	53	0	0	46	1.00
37719075--37719110	6	6.0	6	86	0	54	33	16	2	47	1.61
37722521--37722829	153	2.0	153	98	0	600	26	22	18	31	1.97
37730542--37730570	9	3.0	10	90	10	51	58	0	20	20	1.39
37730657--37730709	6	8.7	6	91	2	70	60	0	22	16	1.36
37730657--37730709	18	2.9	18	91	2	79	60	0	22	16	1.36
37736254--37736367	57	2.0	58	84	5	151	28	17	7	46	1.76
37737538--37737589	6	8.5	6	91	2	50	28	1	34	34	1.69
37737561--37737591	6	5.2	6	96	0	53	22	0	32	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37741348--37741390	22	2.0	22	86	9	61	60	11	9	18	1.57
37744350--37744393	6	7.3	6	84	0	52	20	2	68	9	1.28
37744964--37744995	6	5.3	6	96	0	55	18	0	68	12	1.20
37745153--37745196	3	14.7	3	80	0	52	4	2	70	22	1.17
37745144--37745193	6	8.2	6	86	2	55	8	2	70	20	1.23
37745150--37745196	12	3.9	12	85	0	67	6	2	70	21	1.20
37745313--37745348	18	2.0	18	88	0	54	22	2	63	11	1.39
37758852--37759628	41	19.0	41	98	0	1457	23	27	19	28	1.99
37791757--37791819	22	2.9	21	76	7	54	53	0	3	42	1.16
37792299--37792337	17	2.3	17	95	0	69	46	2	0	51	1.14
37792642--37792673	15	2.2	15	94	5	57	37	3	6	53	1.42
37792768--37792799	15	2.2	15	94	5	57	37	3	6	53	1.42
37792575--37792812	126	1.9	126	97	0	449	36	15	7	39	1.77
37793729--37793753	13	1.9	13	100	0	50	8	0	24	68	1.16
37795811--37795923	41	2.8	41	83	2	138	30	21	26	21	1.98
37802376--37802438	3	21.0	3	76	12	58	30	3	3	63	1.25
37802744--37802821	33	2.4	33	93	0	129	29	7	6	56	1.52
37802807--37802840	17	2.0	16	88	11	50	32	5	2	58	1.37
37806031--37806106	35	2.2	34	84	9	93	46	14	15	23	1.83
37806298--37806346	19	2.7	19	84	9	59	32	16	6	44	1.72
37806323--37806361	15	2.6	16	88	12	64	41	5	5	48	1.47
37806455--37806486	15	2.2	15	94	5	57	37	3	6	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37806264--37806511	126	2.0	126	97	0	469	37	16	6	38	1.75
37811725--37811783	14	3.7	16	82	13	68	50	1	1	45	1.21
37812490--37812538	25	2.0	25	92	8	82	30	2	4	63	1.24
37813848--37813940	44	2.1	46	86	8	129	33	5	24	36	1.78
37816827--37816866	16	2.5	16	87	0	62	35	7	30	27	1.84
37818425--37818478	18	2.9	18	88	2	81	40	46	0	12	1.42
37818518--37818546	6	4.8	6	100	0	58	65	17	0	17	1.27
37818578--37818634	9	6.4	9	93	4	98	24	10	22	42	1.85
37818579--37818634	26	2.1	27	90	9	73	23	10	23	42	1.85
37824943--37825038	40	2.4	40	91	0	156	31	27	13	28	1.94
37826319--37826565	32	7.7	32	82	1	257	35	23	21	19	1.96
37826319--37826535	96	2.3	96	86	3	303	35	24	21	18	1.96
37826326--37826565	96	2.5	96	82	6	299	36	24	20	19	1.95
37826571--37826647	26	3.0	26	96	0	136	35	24	23	16	1.95
37826584--37826629	14	3.4	14	72	22	53	36	26	21	15	1.93
37826635--37826694	27	2.2	27	85	11	79	31	23	25	20	1.98
37826843--37827274	27	16.1	27	80	4	329	23	20	20	35	1.96
37830380--37830439	9	6.4	9	86	7	84	36	26	10	26	1.88
37830447--37830507	17	3.4	17	70	12	59	50	14	3	31	1.59
37830442--37830512	37	1.9	37	100	0	142	46	16	4	32	1.67
37830445--37830529	37	2.3	37	90	8	129	48	15	4	31	1.65
37832374--37832839	235	2.0	234	93	2	803	31	24	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37842942--37842996	25	2.2	25	86	0	74	32	16	27	23	1.96
37843298--37843323	5	5.2	5	100	0	52	42	19	0	38	1.51
37845161--37845216	28	2.0	28	92	0	94	32	17	17	32	1.94
37846940--37846965	8	3.2	8	100	0	52	76	11	0	11	1.01
37849290--37849354	31	2.0	33	85	11	91	38	9	10	41	1.72
37850901--37850940	21	1.9	21	85	10	55	25	7	0	67	1.16
37858781--37859008	90	2.5	91	82	4	291	25	15	25	34	1.94
37874912--37875033	43	2.8	43	86	3	174	36	26	18	18	1.94
37884337--37884375	5	7.6	5	85	5	51	51	0	2	46	1.14
37884337--37884382	15	2.9	16	83	6	58	50	0	4	45	1.21
37888291--37888756	209	2.3	198	84	5	549	29	10	14	45	1.77
37888291--37888756	199	2.3	203	83	7	559	29	10	14	45	1.77
37892519--37892549	16	1.9	16	93	0	53	41	9	0	48	1.36
37907140--37907239	49	2.0	49	98	0	191	54	7	12	27	1.63
37908635--37908672	16	2.3	17	86	9	60	71	13	0	15	1.16
37911845--37911890	24	1.9	24	86	8	67	65	0	2	32	1.05
37911869--37911898	15	2.1	14	93	6	51	70	0	0	30	0.88
37912400--37912429	14	2.1	14	100	0	60	36	6	16	40	1.75
37913193--37913253	30	2.0	30	87	6	88	32	0	45	21	1.52
37913595--37913632	20	1.9	20	84	10	51	31	0	0	68	0.90
37914154--37914204	19	2.7	19	80	14	54	50	0	1	47	1.12
37914163--37914214	26	2.0	27	88	11	81	53	0	1	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37914167--37914223	26	2.1	28	84	12	75	54	1	1	42	1.21
37917160--37917194	15	2.3	15	90	0	52	28	2	8	60	1.41
37918525--37918583	25	2.4	25	82	2	66	33	11	23	30	1.91
37924505--37924545	20	2.0	20	85	9	55	31	17	31	19	1.95
37925878--37926040	71	2.3	71	81	7	172	39	11	9	39	1.74
37925905--37926040	71	1.9	71	83	5	177	39	9	8	42	1.67
37926339--37926501	71	2.3	71	81	7	172	39	11	9	39	1.74
37926366--37926501	71	1.9	71	83	5	177	39	9	8	42	1.67
37925865--37926788	461	2.0	462	99	0	1841	36	11	8	44	1.71
37933369--37933399	15	2.0	16	93	6	55	48	0	19	32	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145