genome.fa.s2.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  8  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2868755--2868883	65	2.0	65	95	0	231	43	16	13	26	1.85
2870396--2870468	29	2.5	28	82	10	85	32	4	1	61	1.23
2871158--2871196	20	1.9	21	89	5	62	25	5	0	69	1.09
2875341--2875385	24	1.9	23	86	4	63	31	8	2	57	1.41
2875673--2875712	14	2.6	15	84	15	55	17	2	7	72	1.19
2880475--2880502	13	2.2	13	100	0	56	60	0	0	39	0.97
2881759--2881819	12	6.0	11	76	23	55	36	1	0	62	1.05
2885388--2885968	44	13.3	44	72	9	350	27	22	19	31	1.98
2885445--2885730	85	3.3	85	72	12	278	29	23	18	29	1.98
2885309--2885828	173	3.0	173	90	2	778	28	21	18	31	1.97
2885578--2885909	131	2.6	129	80	7	352	28	21	19	29	1.98
2885986--2886114	51	2.5	50	83	2	159	27	26	15	31	1.96
2885999--2886477	123	3.8	123	73	10	415	28	23	16	31	1.96
2886146--2886306	86	1.9	87	82	1	207	29	23	19	27	1.98
2885978--2886563	260	2.2	261	86	1	827	28	23	17	30	1.97
2886232--2886380	51	2.9	51	76	1	147	26	23	18	30	1.98
2886505--2886664	51	3.2	50	77	8	184	28	23	17	31	1.97
2886972--2887029	24	2.4	24	82	5	73	31	18	8	41	1.81
2888928--2888964	11	3.3	11	88	3	56	56	8	16	18	1.64
2904578--2904764	41	4.6	41	88	4	207	25	22	22	28	1.99
2904578--2904764	82	2.3	82	89	1	277	25	22	22	28	1.99
2907707--2907795	42	2.1	42	82	0	115	46	19	21	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2913439--2913495	16	3.6	16	95	0	87	29	0	36	33	1.58
2913741--2913775	18	2.0	17	88	5	52	54	0	0	45	0.99
2919711--2919756	18	2.6	18	83	13	67	15	17	17	50	1.79
2925523--2925558	16	2.2	16	95	0	63	22	5	0	72	1.05
2926868--2926926	21	2.8	21	72	12	57	25	1	3	69	1.13
2931299--2931346	16	2.9	17	73	17	55	79	10	0	10	0.95
2936915--2936963	18	2.6	19	78	18	57	73	2	2	22	1.04
2940103--2940136	16	2.1	16	88	0	50	38	2	17	41	1.65
2941253--2941282	2	15.0	2	100	0	60	50	0	0	50	1.00
2942712--2942850	59	2.3	60	90	3	210	35	12	23	28	1.91
2943440--2943482	22	2.0	22	95	0	77	30	11	9	48	1.71
2944455--2944715	89	2.9	89	85	3	330	26	6	9	56	1.57
2946907--2947202	93	3.2	93	87	3	416	42	2	17	37	1.61
2946971--2947118	43	3.3	43	65	18	111	39	2	21	37	1.65
2947750--2948038	109	2.7	107	87	3	425	34	19	16	29	1.94
2948497--2948546	3	16.7	3	100	0	100	66	0	0	34	0.92
2950351--2950551	44	4.6	44	80	5	196	28	21	20	29	1.98
2950819--2950937	46	2.7	43	80	6	116	30	22	21	26	1.99
2950998--2951855	86	9.8	87	90	3	1099	25	24	22	27	2.00
2951175--2951395	42	5.1	41	65	15	124	23	25	23	28	2.00
2951102--2951413	43	7.2	43	64	12	154	24	23	23	28	2.00
2950998--2951855	260	3.3	257	87	4	1112	25	24	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2951451--2951673	42	5.2	41	65	19	125	24	22	23	28	1.99
2951665--2951807	44	3.2	44	68	13	128	27	27	21	23	1.99
2951680--2951819	43	3.1	43	70	11	145	25	27	21	25	1.99
2954619--2954656	6	6.0	6	88	11	58	0	18	0	81	0.69
2954619--2954654	14	2.8	13	91	8	56	0	16	0	83	0.65
2954619--2954656	13	3.0	12	88	11	58	0	18	0	81	0.69
2954682--2954723	7	6.0	7	78	10	50	14	0	4	80	0.86
2954684--2954724	21	2.0	21	100	0	82	12	0	4	82	0.81
2954679--2954722	15	3.1	14	87	9	63	13	0	6	79	0.92
2956639--2956707	34	2.0	35	97	2	131	30	11	23	34	1.90
2961135--2961241	40	2.7	41	78	11	114	25	26	24	24	2.00
2961384--2961416	17	1.9	17	93	0	57	18	12	3	66	1.36
2961374--2962370	136	7.4	135	83	8	1182	24	11	3	59	1.48
2961474--2962273	257	3.1	256	86	6	1040	23	11	4	60	1.48
2961853--2961891	17	2.3	17	90	0	60	28	12	0	58	1.34
2961732--2962370	134	4.7	134	83	7	740	24	11	4	60	1.48
2962107--2962142	17	2.1	17	100	0	72	11	11	5	72	1.28
2962178--2962223	17	2.6	17	86	6	56	19	13	2	65	1.37
2962259--2962302	17	2.6	17	92	0	70	31	4	2	61	1.28
2962705--2962796	6	15.7	6	82	6	109	34	15	2	47	1.57
2973056--2973093	18	2.1	19	85	5	51	34	0	5	60	1.19
2973113--2973158	22	2.1	22	84	8	58	47	2	2	47	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2975379--2975435	3	18.7	3	92	3	96	66	0	1	31	1.02
2976949--2977026	30	2.8	28	74	16	88	23	2	8	65	1.34
2983342--2983458	35	3.3	35	82	1	135	15	9	31	43	1.78
2984871--2985360	250	2.0	250	86	4	684	26	31	13	28	1.94
2990242--2990354	40	2.8	42	77	10	112	38	19	17	23	1.93
2990244--2990377	40	3.4	40	76	6	105	38	20	17	22	1.93
2990512--2990556	21	2.0	23	83	8	58	42	2	4	51	1.34
2990775--2990808	15	2.3	15	90	5	52	20	0	38	41	1.53
2990795--2990835	21	2.0	20	85	4	55	19	0	41	39	1.52
2990803--2990860	15	3.9	15	77	2	64	22	0	43	34	1.54
2994559--2994591	6	5.0	7	85	14	52	45	9	0	45	1.35
2994557--2994591	13	2.7	13	100	0	70	42	8	0	48	1.33
2994701--2994732	16	2.0	16	100	0	64	50	0	6	43	1.27
2994750--2994989	43	5.6	42	83	4	270	22	19	30	27	1.98
2995011--2995053	22	2.0	22	90	0	68	46	25	16	11	1.80
2996644--2996751	50	2.1	51	91	5	175	30	13	27	27	1.94
3001044--3001485	216	2.0	217	99	0	868	37	9	9	44	1.68
3005355--3005507	75	2.0	76	98	1	299	41	2	6	49	1.42
3007177--3007216	14	2.9	14	84	0	53	32	7	17	42	1.77
3007200--3007239	20	2.0	20	90	0	62	27	10	12	50	1.72
3007185--3007251	34	1.9	35	90	3	109	31	8	13	46	1.74
3007179--3007255	14	5.0	15	71	20	52	32	9	15	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3013519--3013556	20	1.9	20	84	10	51	81	5	5	7	0.98
3022477--3022509	15	2.1	16	88	5	50	63	9	9	18	1.49
3024506--3024981	238	2.0	238	100	0	952	27	13	14	43	1.84
3028467--3028512	24	1.9	24	81	0	56	6	54	0	39	1.26
3028485--3028543	31	1.9	31	85	0	82	6	57	0	35	1.25
3028471--3028542	37	2.0	36	91	2	117	5	58	0	36	1.22
3028485--3028551	18	3.7	18	80	4	80	5	56	0	37	1.24
3029851--3029908	30	1.9	30	92	0	98	37	22	13	25	1.91
3035690--3035748	30	2.0	30	96	0	109	37	8	23	30	1.85
3039580--3039828	69	3.6	69	85	3	288	44	25	6	23	1.77
3039580--3039828	138	1.8	138	82	5	324	44	25	6	23	1.77
3046186--3046245	21	2.8	22	72	7	61	36	26	18	18	1.94
3046693--3046726	17	1.9	18	88	5	52	35	23	0	41	1.55
3047328--3047352	7	3.6	7	100	0	50	72	0	0	28	0.86
3058574--3058623	16	3.1	16	72	16	50	34	2	6	58	1.34
3060077--3060138	26	2.4	26	91	0	97	33	17	27	20	1.96
3061007--3061103	10	9.8	10	71	18	78	59	0	5	35	1.19
3061008--3061066	30	1.9	32	89	6	95	57	0	3	38	1.15
3061048--3061115	29	2.3	29	76	20	70	58	0	7	33	1.26
3077457--3077517	14	3.9	16	72	22	58	31	19	8	40	1.81
3081492--3081521	15	2.0	15	93	0	51	23	26	13	36	1.92
3082984--3083262	137	2.0	139	97	1	535	32	17	24	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3088803--3089187	87	4.4	87	91	1	578	29	22	23	24	1.99
3088803--3089187	173	2.2	174	90	1	594	29	22	23	24	1.99
3089214--3089350	40	3.2	43	75	13	147	35	22	22	18	1.96
3089327--3089754	87	4.9	87	92	0	730	32	22	22	22	1.98
3101243--3101307	3	21.3	3	76	14	62	30	3	4	61	1.31
3101243--3101307	14	4.8	13	85	10	69	30	3	4	61	1.31
3101264--3101296	7	4.9	7	88	3	50	30	6	0	63	1.18
3103473--3103504	1	32.0	1	100	0	64	0	0	0	100	0.00
3105930--3105994	32	2.0	32	96	0	121	43	21	4	30	1.73
3107933--3107959	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145