genome.fa.s2.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  122  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40667022--40667060	15	2.6	15	95	0	69	28	41	17	12	1.87
40670487--40670588	45	2.1	48	84	8	129	30	30	0	38	1.64
40670572--40670597	3	8.7	3	100	0	52	0	30	0	69	0.89
40671758--40671815	27	2.1	27	96	0	107	29	27	25	17	1.97
40672768--40672798	9	3.4	9	90	0	53	25	12	22	38	1.90
40672851--40672885	18	1.9	18	88	0	52	45	14	11	28	1.79
40673238--40673293	19	3.1	18	80	17	55	23	28	0	48	1.51
40679923--40680164	50	4.7	50	82	8	231	27	20	27	23	1.99
40682889--40682927	19	2.1	19	100	0	78	33	10	25	30	1.89
40686357--40686603	50	4.8	50	80	8	232	27	21	27	23	1.99
40691789--40691850	32	1.9	32	90	0	97	41	4	9	43	1.59
40693379--40693406	14	2.0	14	100	0	56	42	0	0	57	0.99
40694141--40694197	29	1.9	29	82	10	71	35	17	10	36	1.84
40701171--40701245	34	2.2	35	85	4	100	44	13	12	30	1.80
40702613--40702786	9	18.3	9	68	19	70	30	0	5	63	1.20
40702611--40702683	35	2.1	36	84	7	96	31	0	2	65	1.06
40702710--40702757	25	1.9	25	83	8	62	22	0	6	70	1.09
40702798--40702828	9	3.3	9	95	4	53	35	3	0	61	1.12
40706223--40706262	20	2.0	20	100	0	80	40	20	20	20	1.92
40710776--40710876	51	2.0	51	98	0	193	22	16	11	48	1.79
40716465--40716794	165	2.0	165	93	0	561	25	24	13	36	1.92
40720987--40721021	9	3.8	9	92	3	52	74	0	2	22	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40729454--40729499	17	2.7	16	83	6	56	56	6	21	15	1.61
40729685--40729750	32	2.0	33	94	5	116	30	15	16	37	1.90
40730985--40731248	131	2.0	132	99	0	521	43	10	13	32	1.79
40740916--40740956	11	3.7	11	83	0	55	51	4	19	24	1.66
40749457--40749507	25	2.0	25	88	0	75	64	11	1	21	1.36
40751557--40751615	19	3.2	19	61	9	50	52	1	6	38	1.38
40760449--40760505	29	2.0	29	96	0	105	14	12	10	63	1.53
40783983--40784031	24	2.0	24	92	0	80	61	4	4	30	1.33
40792025--40792483	221	2.1	223	89	1	697	35	10	14	40	1.80
40798731--40798781	25	2.0	25	88	0	75	62	5	3	27	1.36
40801604--40801661	19	3.2	19	61	14	50	53	1	6	37	1.38
40807109--40807524	207	2.0	208	99	0	825	40	9	9	40	1.71
40812293--40812333	21	2.0	21	85	0	55	56	4	9	29	1.53
40815303--40815358	27	2.1	27	86	0	76	37	23	23	16	1.93
40824888--40824972	44	1.9	44	82	0	107	41	30	12	15	1.85
40827825--40827868	16	2.8	16	100	0	88	36	18	13	31	1.90
40837736--40837931	89	2.2	89	84	5	261	31	18	21	29	1.97
40837781--40837925	44	3.3	44	69	5	130	30	18	21	29	1.97
40839855--40839892	15	2.5	15	87	12	51	26	10	0	63	1.27
40849712--40849788	32	2.4	32	81	14	88	62	2	0	35	1.09
40861779--40861849	29	2.4	30	79	11	74	21	16	7	54	1.65
40868112--40868137	13	2.0	13	100	0	52	61	7	7	23	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40876174--40876198	12	2.1	12	100	0	50	60	0	8	32	1.26
40884599--40884654	9	6.1	9	75	17	53	25	3	0	71	1.02
40884597--40884670	30	2.5	28	83	12	87	29	2	0	67	1.04
40890983--40891039	21	2.7	21	83	0	78	12	29	35	22	1.91
40891702--40891743	21	2.0	20	86	4	57	14	11	23	50	1.76
40892540--40892604	32	2.0	32	100	0	130	24	21	10	43	1.84
40893863--40895258	697	2.0	698	99	0	2785	34	15	15	34	1.90
40896916--40897073	75	2.1	74	92	5	264	36	7	7	48	1.60
40897533--40897584	18	3.0	18	72	16	56	42	3	0	53	1.19
40901470--40901515	22	2.1	22	91	0	74	60	26	0	13	1.32
40902178--40902226	25	2.0	25	83	0	62	30	6	6	57	1.48
40902270--40902337	25	2.6	27	69	9	68	38	4	2	54	1.36
40912424--40912462	16	2.4	16	86	0	51	23	12	20	43	1.86
40912433--40912463	16	1.9	16	93	0	53	22	9	22	45	1.81
40917784--40917808	13	1.9	13	100	0	50	32	4	24	40	1.73
40918895--40919053	43	3.7	42	82	7	187	24	18	27	28	1.98
40921936--40921998	31	2.0	32	81	3	74	57	19	9	14	1.64
40922257--40922304	25	1.9	25	86	0	69	43	22	8	25	1.81
40924532--40924575	23	1.9	23	81	9	54	47	6	9	36	1.62
40930198--40930327	66	2.0	66	95	0	233	24	4	16	54	1.60
40930814--40930890	27	2.9	27	90	3	120	16	24	38	19	1.92
40931075--40931112	19	2.0	19	89	0	58	50	7	5	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40931940--40931971	12	2.8	12	86	13	50	71	0	0	28	0.86
40937337--40937689	176	2.0	177	99	0	699	41	11	10	36	1.76
40940818--40940855	19	2.0	20	94	5	69	60	0	2	36	1.11
40943023--40943066	20	2.3	19	88	4	61	63	4	2	29	1.26
40943023--40943069	19	2.4	20	85	3	60	59	8	2	29	1.39
40943351--40943390	21	1.9	21	85	10	55	22	20	12	45	1.84
40948255--40948309	25	2.2	25	93	0	92	38	16	14	30	1.89
40953848--40954307	113	4.0	113	79	6	475	30	19	23	27	1.98
40955672--40955949	147	1.9	147	81	5	339	25	14	25	35	1.93
40957152--40957210	27	2.2	27	93	0	100	35	15	1	47	1.55
40971696--40971760	30	2.2	30	83	5	78	41	3	4	50	1.38
40971693--40971766	30	2.5	30	76	10	71	40	5	4	50	1.44
40973439--40973685	131	1.9	132	83	2	327	29	2	27	41	1.69
40974754--40974969	83	2.6	85	82	4	267	21	17	30	31	1.96
40974754--40974969	43	5.1	43	87	3	260	21	17	30	31	1.96
40977460--40977525	22	3.0	22	93	6	116	30	31	1	36	1.67
40977496--40977554	30	2.0	30	96	0	109	32	35	0	32	1.58
40977474--40977573	52	1.9	52	88	8	150	29	35	1	35	1.64
40977526--40977578	22	2.4	22	84	6	72	32	33	0	33	1.58
40977582--40977615	17	1.9	18	88	5	52	23	11	0	64	1.26
40977613--40977662	10	4.6	11	77	7	50	44	0	2	54	1.11
40977610--40977676	31	2.2	30	84	12	91	38	0	1	59	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40977625--40977668	21	2.2	20	91	4	70	36	0	0	63	0.95
40977625--40977670	20	2.3	21	88	7	69	39	0	0	60	0.97
40978659--40978683	7	3.6	7	100	0	50	28	0	12	60	1.32
40978945--40979037	30	3.2	30	61	27	72	30	17	33	19	1.95
40978945--40979058	58	2.0	58	100	0	228	31	15	33	19	1.93
40979097--40979139	21	2.0	21	100	0	86	27	23	23	25	2.00
40979942--40980864	57	16.2	57	99	0	1810	45	22	0	31	1.53
40994479--40994528	25	2.0	24	85	11	66	62	0	8	30	1.24
40994490--40994528	12	3.2	12	82	17	53	61	0	7	30	1.24
40995235--40995274	21	1.9	21	85	10	55	72	2	17	7	1.19
40999704--41000367	85	8.0	81	73	10	367	26	21	21	30	1.98
40999600--40999983	210	1.8	210	88	5	587	26	20	22	30	1.98
40999791--41000417	125	5.0	125	90	2	904	26	21	21	30	1.98
40999628--41000147	210	2.5	209	81	8	551	26	21	21	30	1.99
41000450--41000622	50	3.5	50	78	7	190	23	23	21	32	1.98
41000414--41000625	100	2.1	100	85	3	284	24	20	19	34	1.96
41000855--41001000	44	3.3	44	90	1	222	26	26	17	29	1.98
41002284--41002311	6	4.7	6	100	0	56	0	14	0	85	0.59
41003079--41003144	25	2.6	25	87	4	87	57	4	15	22	1.56
41007035--41007080	3	15.3	3	100	0	92	67	0	0	32	0.91
41010122--41010178	30	1.9	30	85	7	80	24	29	15	29	1.96
41013307--41013393	24	3.6	24	80	7	104	18	34	1	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41016545--41016637	19	5.1	19	68	12	68	30	10	12	46	1.76
41016526--41016647	54	2.3	54	92	0	208	31	10	15	41	1.81
41016740--41016767	10	2.8	10	100	0	56	17	0	21	60	1.36
41018263--41018308	20	2.3	20	100	0	92	26	8	34	30	1.86
41021252--41021368	57	2.1	57	96	0	216	34	10	19	35	1.86
41023295--41023624	44	7.5	43	78	10	235	29	17	24	28	1.97
41023332--41023624	132	2.2	132	83	6	369	29	17	24	28	1.97
41023332--41023608	88	3.1	87	80	8	276	30	16	25	28	1.96
41023339--41023671	132	2.5	129	80	10	352	29	17	24	28	1.97
41023375--41023770	44	9.0	44	74	9	242	29	17	25	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145