genome.fa.s2.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  138  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45891926--45891974	12	4.2	12	84	5	55	57	2	0	40	1.10
45895075--45896119	45	22.7	45	72	12	538	30	19	16	33	1.94
45895146--45895426	96	2.9	96	87	1	377	29	20	17	32	1.95
45895264--45895567	141	2.2	141	89	0	464	30	19	17	33	1.94
45895345--45895928	96	6.4	96	79	8	513	30	20	16	32	1.94
45895163--45895615	237	1.9	236	88	0	672	30	19	16	33	1.95
45895583--45895646	31	2.1	31	90	0	101	31	18	20	29	1.96
45895583--45895664	31	2.7	31	84	5	87	30	18	18	32	1.95
45895532--45895697	82	2.0	82	92	0	278	31	18	17	31	1.94
45895614--45895838	95	2.4	96	86	2	301	31	20	16	32	1.94
45896180--45896305	51	2.5	51	88	0	180	30	18	16	34	1.93
45896086--45896443	196	1.8	196	90	0	572	29	19	17	32	1.95
45896325--45896562	119	2.0	119	90	1	370	27	23	17	32	1.96
45896496--45896611	51	2.3	51	80	4	128	28	19	19	31	1.97
45903168--45903205	12	3.2	12	85	10	51	55	2	0	42	1.14
45916858--45916912	25	2.3	24	79	11	60	54	7	1	36	1.39
45917621--45919375	876	2.0	877	98	0	3397	37	9	10	42	1.72
45921996--45922048	25	2.1	25	82	6	63	45	32	7	15	1.74
45927532--45927750	50	4.3	50	92	1	357	28	24	14	32	1.94
45927532--45927750	101	2.2	101	95	0	393	28	24	14	32	1.94
45927726--45927769	7	6.3	7	91	0	61	25	29	6	38	1.81
45927737--45927852	51	2.3	51	89	0	178	29	21	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45927672--45927815	65	2.2	65	88	0	216	28	25	11	35	1.90
45933387--45933436	21	2.4	21	86	0	73	42	18	26	14	1.87
45939349--45939397	25	2.0	25	100	0	98	36	24	8	30	1.85
45939615--45939662	24	2.0	24	100	0	96	37	25	8	29	1.85
45941014--45941367	166	2.1	165	82	2	415	44	19	11	24	1.84
45943412--45943441	7	4.3	7	95	0	51	53	30	0	16	1.44
45945768--45945821	25	2.2	25	86	3	74	29	1	5	62	1.28
45949132--45949329	100	2.0	97	88	4	290	33	19	18	28	1.95
45951323--45951356	3	11.3	3	100	0	68	67	0	0	32	0.91
45954069--45954093	8	3.1	8	100	0	50	76	12	0	12	1.04
45954122--45954168	17	2.6	18	83	6	51	78	4	6	10	1.06
45954131--45954170	20	2.0	20	90	4	64	80	2	5	12	0.98
45954189--45954323	3	45.3	3	78	1	119	62	2	3	31	1.24
45961241--45961328	29	3.0	29	84	0	113	21	30	36	11	1.89
45967883--45967931	25	2.0	25	100	0	98	36	24	8	30	1.85
45969280--45969631	166	2.1	163	83	4	440	44	20	11	23	1.84
45971895--45972119	68	3.3	68	99	0	441	54	5	4	36	1.42
45972796--45972821	2	13.0	2	100	0	52	50	0	0	50	1.00
45981638--45981691	22	2.4	22	78	9	56	40	5	1	51	1.36
45983661--45983694	12	2.8	12	86	0	50	38	5	35	20	1.77
45996334--45996384	17	3.2	17	70	13	54	35	3	3	56	1.36
45999329--45999425	40	2.4	40	81	6	106	34	7	11	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45999625--45999685	30	2.0	30	100	0	122	42	9	6	40	1.64
46002805--46002837	2	17.0	2	87	6	50	51	0	0	48	1.00
46003199--46003234	16	2.2	16	95	0	63	86	0	11	2	0.68
46005264--46005333	35	2.2	32	78	14	74	41	1	4	52	1.30
46007461--46007670	108	1.9	108	95	0	375	33	13	20	32	1.91
46008565--46008803	118	2.0	119	95	3	437	26	18	22	32	1.97
46012284--46012318	18	2.0	17	88	5	52	45	0	0	54	0.99
46012465--46012574	45	2.6	44	81	8	131	31	29	5	33	1.80
46012553--46012606	16	3.4	16	89	0	81	31	33	0	35	1.58
46012628--46012939	156	2.0	156	100	0	624	38	7	19	33	1.81
46016461--46016503	15	2.9	14	90	10	68	86	4	2	6	0.79
46016468--46016509	15	2.8	15	96	0	75	88	4	0	7	0.64
46016470--46016511	21	2.0	20	86	4	57	85	7	0	7	0.73
46016460--46016509	14	3.5	13	84	12	55	86	4	2	8	0.78
46018245--46018330	44	2.0	41	86	8	120	29	20	13	36	1.92
46018270--46019041	45	17.3	44	72	7	493	28	23	17	29	1.97
46018292--46018551	89	2.9	89	79	2	288	28	23	17	29	1.97
46018538--46019041	89	5.7	89	89	0	704	29	24	17	28	1.97
46020936--46020971	17	2.1	17	89	0	54	44	22	16	16	1.86
46024817--46024860	18	2.4	19	85	7	56	68	0	25	6	1.14
46026353--46026396	18	2.4	19	85	7	56	68	0	25	6	1.14
46031490--46031536	17	2.7	17	90	9	69	25	4	0	70	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46032567--46033128	245	2.3	247	90	3	889	37	15	16	30	1.90
46033521--46034201	339	2.0	340	99	0	1355	39	8	11	40	1.72
46035423--46035492	35	2.2	32	78	14	74	41	1	4	52	1.30
46036993--46037087	50	1.9	50	93	4	165	42	25	10	22	1.85
46042273--46042316	18	2.4	19	85	7	56	68	0	25	6	1.14
46043485--46043931	225	2.0	225	100	0	894	29	9	15	45	1.78
46046081--46046116	18	2.0	18	94	0	63	55	2	22	19	1.56
46046099--46046157	30	2.0	30	89	0	91	44	8	18	28	1.79
46060129--46060181	21	2.5	21	87	0	70	18	16	26	37	1.93
46060659--46060701	16	2.6	16	85	3	50	9	20	0	69	1.15
46063049--46063125	12	6.2	11	79	20	73	28	2	2	66	1.18
46063049--46063117	3	23.0	3	80	11	79	30	2	1	65	1.16
46063371--46063411	2	21.0	2	85	5	57	48	2	0	48	1.14
46065111--46065245	65	2.1	65	88	5	202	37	8	12	41	1.74
46067076--46067108	16	2.0	17	88	5	50	51	0	0	48	1.00
46067203--46067498	146	2.0	147	99	0	585	32	18	2	47	1.60
46070184--46070220	17	2.2	17	90	0	56	59	16	10	13	1.61
46076723--46076761	20	2.0	20	85	10	53	61	2	0	35	1.10
46077195--46077233	19	2.0	20	85	5	53	48	0	0	51	1.00
46078265--46078325	27	2.3	27	94	0	104	36	9	9	44	1.71
46079130--46079321	96	2.0	96	96	0	357	37	13	5	43	1.67
46080760--46081315	193	2.8	194	89	2	803	34	16	17	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46090575--46090611	17	2.2	17	90	0	56	59	16	10	13	1.61
46101572--46101635	29	2.2	29	83	5	76	29	7	7	54	1.57
46104550--46104606	3	19.0	3	82	7	71	66	0	3	29	1.08
46106162--46106323	44	3.7	44	78	12	190	27	21	17	32	1.96
46106146--46106338	88	2.2	88	87	4	282	26	23	18	30	1.98
46106580--46106719	43	3.2	44	73	6	165	24	23	22	29	1.99
46106538--46106724	89	2.1	89	92	4	306	25	24	19	30	1.98
46106580--46106742	44	3.7	43	72	6	137	26	23	21	28	1.99
46106789--46106915	45	2.8	45	72	5	141	26	24	20	28	1.99
46106789--46106964	92	1.9	90	96	2	325	23	25	21	29	1.99
46106819--46106964	44	3.2	46	72	7	161	21	24	22	30	1.99
46106537--46107044	255	2.0	252	94	2	885	26	24	19	29	1.99
46106807--46107009	92	2.2	92	87	3	277	27	24	20	28	1.99
46108283--46108424	48	3.0	48	86	5	198	13	26	16	44	1.84
46115261--46115358	34	2.9	32	80	8	115	54	5	8	32	1.52
46117508--46118047	192	2.8	193	82	5	576	34	16	16	33	1.91
46119092--46119173	31	2.6	31	80	0	92	26	14	10	47	1.77
46124107--46124203	45	2.2	45	76	12	101	38	2	1	58	1.16
46125002--46125437	217	2.0	218	99	0	856	21	23	21	33	1.97
46125628--46126137	193	2.8	184	86	5	678	31	16	18	32	1.94
46125779--46126240	193	2.4	193	86	0	636	31	15	17	35	1.91
46130712--46130808	45	2.2	45	76	12	101	38	2	1	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46133568--46134828	241	5.3	241	88	1	1813	34	16	13	35	1.88
46136342--46136380	17	2.3	17	82	8	53	38	0	5	56	1.22
46142772--46142812	15	2.6	16	77	14	50	29	2	7	60	1.36
46143576--46143620	22	2.0	22	82	4	54	28	17	15	37	1.91
46143588--46143630	22	2.0	22	90	0	68	23	20	13	41	1.88
46151296--46151334	16	2.4	16	82	4	51	38	0	2	58	1.12
46151590--46151635	20	2.2	20	88	3	65	69	8	10	10	1.37
46151891--46151915	4	6.2	4	100	0	50	76	0	24	0	0.80
46151901--46151952	14	3.6	14	74	5	50	59	1	34	3	1.27
46155825--46155859	14	2.5	14	90	0	52	34	17	5	42	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145