genome.fa.s2.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  40  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12825332--12825644	128	2.5	127	80	3	335	19	28	31	21	1.97
12825308--12825811	42	11.9	42	75	9	389	18	27	33	20	1.96
12825585--12825811	85	2.7	84	82	8	298	18	28	34	18	1.95
12825997--12826386	85	4.6	86	87	2	436	19	33	28	18	1.96
12825954--12826495	42	12.7	41	75	8	333	20	33	28	18	1.96
12825947--12826478	85	6.3	86	81	6	367	19	32	28	18	1.96
12825947--12826493	170	3.2	169	77	8	495	20	32	28	18	1.96
12835639--12835663	4	6.2	4	100	0	50	76	0	0	24	0.80
12837271--12837313	20	2.1	21	91	4	70	25	2	0	72	0.97
12840882--12840969	44	2.0	44	93	0	149	36	20	7	35	1.82
12844913--12844949	18	2.0	19	89	5	58	62	16	21	0	1.33
12845877--12845902	7	3.7	7	100	0	52	88	0	0	11	0.52
12847760--12847804	4	11.2	4	100	0	90	51	24	0	24	1.49
12848904--12848940	19	1.9	19	88	0	56	24	2	2	70	1.14
12857211--12857282	28	2.5	28	78	10	76	37	25	16	20	1.93
12859992--12860060	36	1.9	36	90	0	111	26	26	11	36	1.90
12863334--12863374	19	2.1	21	86	13	61	48	9	7	34	1.64
12870757--12870790	17	2.0	17	88	11	52	17	38	29	14	1.90
12874126--12874163	16	2.3	17	86	4	51	26	0	13	60	1.33
12876521--12876569	22	2.3	21	78	3	53	28	12	4	55	1.55
12877043--12877078	18	2.0	17	89	10	54	22	2	0	75	0.94
12896151--12896237	21	4.1	21	81	0	102	43	19	22	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12896151--12896237	42	2.1	42	86	0	120	43	19	22	13	1.86
12897169--12897207	11	3.6	11	79	6	53	25	10	2	61	1.41
12897166--12897207	21	2.0	21	100	0	84	23	9	4	61	1.45
12898177--12898437	41	6.4	40	79	4	254	35	15	27	21	1.94
12898181--12898437	123	2.1	123	82	2	320	35	15	27	21	1.93
12928714--12928765	26	2.0	26	92	0	86	44	13	17	25	1.85
12930909--12930938	12	2.5	12	100	0	60	26	40	26	6	1.81
12932461--12932516	24	2.3	24	75	0	58	37	1	39	21	1.64
12933507--12933777	27	10.0	27	80	4	217	44	20	17	17	1.87
12933507--12933777	54	5.0	53	80	2	263	44	20	17	17	1.87
12933507--12933767	81	3.2	80	78	6	267	44	20	16	18	1.86
12934727--12934759	14	2.3	15	89	5	50	30	0	9	60	1.27
12936191--12936234	16	2.8	17	83	13	58	43	0	0	56	0.99
12936292--12936318	14	1.9	14	100	0	54	37	22	25	14	1.93
12967016--12967137	60	2.0	60	98	0	235	36	13	26	23	1.93
12969889--12969936	23	2.1	23	96	0	87	31	10	22	35	1.88
12973961--12974194	28	8.4	28	87	4	291	30	21	24	23	1.99
12973961--12974194	56	4.2	56	85	4	323	30	21	24	23	1.99
12974581--12974738	27	5.9	27	87	0	208	20	15	20	43	1.87
12974597--12974748	81	1.9	81	94	2	270	19	13	21	45	1.85
12974597--12974809	27	7.9	26	79	5	174	21	13	20	45	1.85
12982188--12982238	22	2.3	22	89	0	75	39	13	13	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12990587--12990624	18	2.1	19	85	5	51	44	7	7	39	1.63
13002999--13003048	19	2.6	19	79	20	59	56	0	20	24	1.43
13021354--13021584	114	2.0	115	99	0	455	32	15	12	39	1.86
13022098--13022134	18	2.0	19	89	5	58	45	5	8	40	1.56
13029517--13029579	23	2.7	23	85	0	81	38	26	6	28	1.81
13049046--13049075	4	7.5	4	100	0	60	73	0	0	26	0.84
13051706--13051827	61	2.0	61	96	0	226	24	18	19	37	1.94
13060804--13060861	20	3.1	20	76	19	70	24	13	17	44	1.85
13062341--13062439	26	3.8	26	89	0	153	34	24	21	20	1.97
13062592--13062912	27	11.9	28	80	5	195	19	14	21	44	1.86
13062603--13062912	54	5.8	53	81	6	293	18	15	20	45	1.86
13062603--13062935	81	4.1	80	79	9	300	19	15	19	45	1.85
13062633--13062935	27	11.2	27	82	4	251	19	15	19	44	1.86
13064556--13064606	16	3.2	16	75	10	59	54	11	0	33	1.37
13068196--13068447	50	5.0	50	84	6	314	28	28	18	23	1.98
13072276--13072856	289	2.0	290	89	1	889	34	14	13	37	1.86
13076898--13076949	3	17.3	3	87	0	77	30	30	0	38	1.58
13076937--13077017	30	2.7	30	88	0	108	18	34	3	43	1.68
13078863--13078905	19	2.2	20	87	8	61	62	0	2	34	1.08
13078861--13078899	17	2.2	18	90	4	62	58	0	2	38	1.12
13078862--13078920	20	2.7	21	70	19	50	62	0	1	35	1.05
13078940--13079620	340	2.0	341	99	0	1355	48	9	12	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13079954--13080010	10	5.2	11	74	21	57	21	35	0	43	1.52
13079971--13080026	22	2.5	22	97	2	103	28	32	0	39	1.57
13081197--13081228	7	4.6	7	100	0	64	28	0	12	59	1.34
13082392--13082464	25	2.9	25	89	0	110	43	1	13	41	1.53
13082499--13082985	29	16.1	29	82	12	572	42	25	3	28	1.71
13082609--13082684	28	2.8	25	91	6	71	43	22	2	31	1.67
13082499--13082985	57	8.1	58	82	12	572	42	25	3	28	1.71
13082668--13082699	15	2.1	15	94	0	55	46	12	3	37	1.57
13082639--13082726	42	2.0	44	91	4	144	43	20	3	32	1.69
13084851--13085185	123	2.7	125	90	1	532	31	22	16	29	1.96
13084851--13085200	125	2.8	122	87	3	504	32	22	16	29	1.95
13086354--13087150	397	2.0	398	99	0	1587	44	9	10	35	1.71
13089337--13089401	33	2.0	33	87	6	96	18	21	26	33	1.96
13089658--13089729	36	2.0	36	88	0	108	43	16	19	20	1.89
13091092--13091143	22	2.4	22	80	3	61	34	15	15	34	1.89
13091286--13091396	38	2.9	39	81	5	136	35	18	12	33	1.89
13091601--13091655	19	2.8	19	80	5	56	60	0	7	32	1.24
13106245--13106273	7	4.1	7	100	0	58	86	0	0	13	0.58
13123313--13123432	60	2.0	60	83	3	152	32	21	15	30	1.95
13129296--13129342	6	7.5	6	86	9	67	19	0	2	78	0.85
13133993--13134027	6	5.8	6	100	0	70	17	0	0	82	0.66
13136486--13136630	23	6.3	23	68	9	71	34	16	22	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13136481--13136621	46	3.1	45	80	2	147	36	17	20	26	1.94
13148025--13148211	51	3.7	51	80	6	236	31	25	17	25	1.97
13148029--13148211	101	1.8	102	90	1	296	31	25	17	25	1.97
13148437--13148467	16	1.9	16	93	0	53	45	9	9	35	1.70
13151059--13151107	24	2.0	24	92	0	80	14	18	36	30	1.90
13153746--13153816	25	2.8	25	73	12	74	23	23	22	29	1.99
13155388--13155851	231	2.0	232	99	0	921	30	14	21	33	1.93
13161693--13161763	25	2.8	25	73	12	74	23	23	22	29	1.99
13165961--13166004	21	2.0	23	91	8	74	61	0	0	38	0.96
13166001--13166030	7	4.3	7	100	0	60	13	0	0	86	0.57
13168412--13168448	17	2.2	17	90	4	58	40	2	8	48	1.47
13169473--13169507	15	2.3	15	90	0	52	60	14	0	25	1.35
13169881--13169926	23	2.0	24	91	4	76	65	2	2	30	1.16
13169893--13169940	23	2.1	23	84	7	62	64	4	2	29	1.23
13170997--13171183	44	4.2	44	84	4	243	28	26	16	28	1.97
13171261--13171402	43	3.3	43	63	14	110	17	27	28	26	1.98
13171233--13171376	44	3.3	44	63	14	116	21	25	28	24	1.99
13171229--13171429	88	2.3	88	94	0	366	20	24	28	26	1.99
13171411--13171962	44	12.5	44	78	5	519	30	26	14	28	1.95
13171423--13171962	132	4.1	132	90	0	846	30	26	14	28	1.95
13171420--13171945	265	2.0	264	91	0	854	30	26	14	28	1.95
13177223--13177280	22	2.6	22	81	7	64	41	17	5	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13177668--13177710	20	2.2	20	100	0	86	37	18	4	39	1.72
13181341--13181371	9	3.4	9	90	0	53	25	12	22	38	1.90
13181424--13181460	9	4.1	9	89	0	56	48	13	8	29	1.71
13183405--13183506	53	1.9	53	87	0	150	46	21	8	23	1.79
13183492--13183524	6	5.5	6	100	0	66	51	18	15	15	1.77
13185344--13185384	18	2.3	18	86	0	55	65	7	0	26	1.18
13186820--13186880	29	2.1	29	100	0	122	45	29	3	21	1.67
13187561--13187599	7	5.6	7	100	0	78	71	0	0	28	0.86
13191365--13191476	20	5.2	20	68	22	57	58	1	3	35	1.26
13191481--13191530	18	2.6	19	84	9	66	52	0	4	44	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145