genome.fa.s2.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  92  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30719220--30719262	19	2.1	20	83	12	52	44	6	4	44	1.52
30722299--30722325	14	1.9	14	100	0	54	44	22	7	25	1.79
30722871--30722919	26	1.9	25	83	4	62	57	2	6	34	1.35
30728038--30728150	54	2.1	54	93	0	190	30	24	7	37	1.82
30734655--30734684	14	2.1	14	93	0	51	50	0	20	30	1.49
30744643--30744676	6	5.7	6	100	0	68	17	17	17	47	1.84
30746654--30746695	22	1.9	22	85	9	59	50	9	0	40	1.35
30747011--30747058	24	2.0	24	91	0	78	52	10	4	33	1.55
30748699--30748885	98	1.9	98	96	0	347	35	15	12	36	1.86
30757805--30757844	19	2.0	20	95	4	73	45	5	10	40	1.60
30758030--30758075	18	2.3	21	78	17	62	60	2	4	32	1.28
30759772--30759816	23	1.9	24	81	4	56	22	0	13	64	1.28
30760161--30760219	21	2.8	21	80	12	59	33	0	3	62	1.12
30761410--30761434	2	12.5	2	100	0	50	48	0	0	52	1.00
30765654--30765721	23	3.2	23	68	23	76	26	14	17	41	1.88
30765649--30765728	40	2.0	40	100	0	160	25	15	17	42	1.88
30768289--30768786	50	9.9	50	76	11	423	28	20	27	23	1.99
30768296--30768722	199	2.1	199	92	3	701	27	21	28	23	1.99
30768416--30768737	156	2.1	154	82	6	370	27	22	28	22	1.99
30768296--30768786	199	2.5	196	87	5	605	27	20	27	23	1.99
30771036--30771120	30	2.8	31	77	13	97	35	18	17	28	1.94
30772465--30772532	30	2.2	30	82	12	77	32	0	4	63	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30776725--30777102	191	2.0	191	94	2	661	45	5	15	33	1.69
30777632--30777664	16	2.1	16	88	11	50	54	9	12	24	1.66
30778399--30778442	24	1.9	24	90	9	74	36	0	2	61	1.09
30778509--30778718	68	3.1	66	93	4	357	45	8	4	41	1.56
30778607--30778634	9	3.1	9	100	0	56	57	10	0	32	1.33
30778707--30778748	16	2.6	16	92	0	66	42	7	2	47	1.43
30778722--30778777	23	2.5	23	82	2	69	44	1	1	51	1.22
30781811--30781890	29	2.8	29	81	7	83	22	27	23	26	2.00
30785507--30785577	31	2.2	34	85	7	94	21	4	1	73	1.08
30785541--30785572	17	1.9	16	93	6	55	25	6	0	68	1.12
30788400--30788589	50	3.7	50	80	4	182	26	21	27	24	1.99
30795935--30796035	35	2.9	35	81	0	121	23	17	15	42	1.88
30797477--30797626	50	3.0	51	83	4	205	23	16	29	31	1.96
30801857--30801898	21	2.0	21	90	9	68	52	19	7	21	1.69
30819507--30819666	57	2.8	57	90	0	257	25	31	14	28	1.95
30824766--30824970	99	2.0	102	92	2	344	46	10	11	31	1.75
30825010--30825072	31	2.0	31	87	6	92	33	11	11	44	1.75
30829332--30829386	22	2.4	21	82	11	56	54	0	3	41	1.18
30830243--30830478	75	3.1	76	91	3	384	54	7	9	28	1.60
30830668--30830760	33	2.8	33	83	3	107	26	11	44	17	1.83
30833167--30833285	60	2.0	60	93	0	202	52	11	1	34	1.48
30833333--30833400	16	4.2	16	74	14	52	60	7	0	32	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30833335--30833405	30	2.4	30	83	2	81	60	7	0	32	1.23
30833413--30833451	19	2.0	20	90	5	62	0	20	0	79	0.73
30833416--30833471	22	2.5	22	79	2	67	0	28	0	71	0.86
30840853--30840971	60	2.0	60	93	0	202	52	14	0	32	1.41
30843589--30843744	29	5.2	29	73	11	102	25	21	25	27	1.99
30843736--30843816	36	2.2	36	82	0	99	35	19	13	30	1.91
30845303--30845382	30	2.7	30	75	7	81	43	25	6	25	1.77
30845183--30845416	31	7.6	31	70	11	86	44	22	7	25	1.79
30845167--30845686	184	2.8	184	90	1	783	44	21	8	26	1.80
30851628--30851687	30	2.0	30	100	0	120	36	13	6	43	1.70
30864095--30864300	102	2.0	102	96	0	376	21	17	15	45	1.85
30872306--30872377	32	2.2	32	85	7	92	45	2	1	50	1.25
30872338--30872377	16	2.5	15	84	11	53	47	2	0	50	1.14
30872666--30872785	63	1.9	61	86	8	170	32	11	13	42	1.80
30872907--30873000	33	2.9	32	82	7	100	64	4	7	23	1.37
30873140--30873183	23	1.9	23	86	9	63	27	2	0	70	0.99
30873548--30873595	20	2.5	20	86	3	71	31	0	8	60	1.26
30876374--30876417	21	2.0	22	87	12	65	68	2	6	22	1.25
30878995--30879107	40	2.9	39	86	4	156	36	24	20	18	1.95
30879157--30879347	41	4.7	41	95	0	346	23	21	25	29	1.99
30879608--30879644	14	2.6	14	91	0	56	21	0	32	45	1.52
30879693--30879725	14	2.3	15	94	5	59	30	0	33	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30879865--30879912	7	7.0	7	80	4	53	16	2	43	37	1.60
30879865--30879912	13	3.5	13	80	5	51	16	2	43	37	1.60
30879862--30879909	20	2.3	20	75	3	51	18	2	41	37	1.63
30880101--30880156	21	2.7	21	85	0	76	17	0	50	32	1.47
30880104--30880154	14	3.6	14	89	2	66	17	0	50	31	1.46
30880110--30880209	14	7.0	14	76	5	67	19	0	43	38	1.51
30880103--30880209	7	15.1	7	78	11	58	19	0	42	37	1.52
30880603--30880695	41	2.3	39	85	7	116	36	15	24	23	1.93
30884832--30885018	43	4.3	43	84	2	232	20	17	33	29	1.95
30887961--30888068	27	4.0	26	79	5	108	31	24	13	30	1.94
30898257--30898496	50	4.7	50	81	9	243	23	29	21	25	1.99
30898257--30898502	100	2.4	103	82	6	286	23	29	21	26	1.99
30905179--30905470	142	2.0	143	94	0	505	31	15	19	32	1.94
30906384--30906412	11	2.6	11	100	0	58	6	34	17	41	1.76
30913605--30913683	39	2.0	39	97	0	149	22	10	18	48	1.78
30923977--30924543	286	2.0	286	93	1	985	35	23	22	18	1.96
30927357--30927430	25	3.0	25	80	5	71	33	22	14	28	1.94
30928275--30928304	7	4.3	7	100	0	60	13	56	0	30	1.37
30934644--30934678	16	2.1	17	89	5	54	11	51	0	37	1.38
30939584--30939631	10	4.7	10	80	12	53	64	0	2	33	1.05
30941517--30941577	30	2.1	30	84	3	79	52	11	6	29	1.62
30952365--30952412	20	2.4	20	96	0	87	33	27	10	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30954750--30954827	40	2.0	40	84	0	102	37	19	25	17	1.94
30965099--30965139	21	1.9	22	95	5	75	36	4	29	29	1.78
30965498--30965555	20	2.9	19	82	5	71	39	8	12	39	1.73
30969270--30969300	2	16.0	2	93	6	55	48	0	0	51	1.00
30971712--30971753	19	2.2	20	91	4	68	54	9	4	30	1.53
30971737--30971773	13	2.7	14	87	8	58	43	13	0	43	1.44
30974726--30974781	29	2.0	28	86	10	78	39	19	7	33	1.79
30974956--30974999	14	3.1	14	86	3	61	59	4	0	36	1.18
30974960--30975043	25	3.2	25	75	11	78	54	2	1	41	1.21
30976844--30976882	17	2.2	18	86	13	55	74	2	17	5	1.12
30990566--30990601	16	2.2	16	95	0	63	41	5	30	22	1.76
30990581--30990671	44	2.0	46	91	4	150	27	4	29	38	1.76
30990581--30990688	46	2.5	44	84	11	136	29	3	30	36	1.75
30990830--30990868	17	2.5	15	84	15	60	61	0	0	38	0.96
30990835--30990868	17	2.0	17	100	0	68	58	0	0	41	0.98
30990901--30990940	20	2.0	21	85	5	55	60	5	0	35	1.19
30991030--30991093	32	2.0	32	81	0	74	48	3	0	48	1.17
30995200--30995224	13	1.9	13	100	0	50	32	8	40	20	1.81
30997480--30997515	5	7.2	5	93	0	63	38	19	0	41	1.52
31008230--31008272	14	3.0	15	86	10	63	25	20	20	32	1.97
31008494--31008531	10	3.5	11	86	13	53	63	2	0	34	1.09
31019404--31019462	15	3.8	16	84	10	77	32	16	10	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31020437--31020487	21	2.4	21	83	9	59	43	27	7	21	1.80
31032338--31032478	67	2.1	67	94	0	246	39	6	19	35	1.77
31034487--31034521	18	1.9	18	88	0	52	11	8	8	71	1.31
31046622--31046694	34	2.1	34	92	0	119	32	23	19	24	1.97
31051435--31051482	17	2.9	17	75	3	53	45	10	16	27	1.80
31053626--31053673	17	2.9	17	75	3	53	45	10	16	27	1.80
31083241--31083280	19	2.1	19	90	9	64	30	10	10	50	1.69
31088586--31088644	29	2.0	29	96	0	109	20	15	11	52	1.73
31096378--31096513	58	2.3	58	82	9	161	41	2	5	50	1.36
31097398--31097452	24	2.3	23	76	14	58	20	12	3	63	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145