genome.fa.s2.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  101  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33862564--33862618	26	2.1	27	83	10	69	38	5	21	34	1.77
33865420--33865452	17	1.9	17	100	0	66	45	6	0	48	1.27
33868992--33869065	29	2.6	29	83	8	98	58	14	12	14	1.64
33869990--33870020	9	3.4	9	90	0	53	25	12	22	38	1.90
33880359--33880405	23	2.0	23	95	0	85	48	14	4	31	1.63
33886598--33886842	89	2.7	89	88	4	325	25	5	11	57	1.56
33886805--33886858	16	3.2	17	79	7	58	25	5	9	59	1.50
33886878--33886927	19	2.5	20	75	21	50	56	0	6	38	1.24
33889466--33889518	19	2.7	20	82	5	63	56	16	18	7	1.63
33890001--33890159	79	2.0	78	85	1	210	42	16	13	28	1.85
33893345--33893422	6	13.5	6	80	10	83	32	14	5	48	1.65
33893345--33893409	23	2.8	23	97	0	121	32	12	4	50	1.60
33895484--33895547	22	2.8	23	90	4	94	48	1	1	48	1.20
33895521--33895577	16	3.6	16	92	0	96	45	3	5	45	1.43
33895610--33895780	18	9.3	18	63	21	61	39	4	7	49	1.49
33895602--33895785	93	2.0	93	96	0	341	39	4	7	48	1.52
33895834--33895876	22	2.0	22	86	4	61	55	4	2	37	1.33
33898918--33898948	16	1.9	16	100	0	62	12	3	32	51	1.56
33903852--33903979	37	3.1	42	65	12	104	56	8	7	28	1.56
33903819--33904038	80	2.8	79	85	3	271	56	9	7	27	1.57
33904271--33904342	33	2.2	33	87	5	101	23	12	48	15	1.79
33915365--33915416	11	4.7	11	79	9	52	25	30	1	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33915361--33915416	22	2.6	22	78	15	64	25	28	1	44	1.64
33915387--33915464	40	2.0	40	84	5	104	25	26	1	46	1.61
33916374--33916411	20	1.9	20	89	10	60	36	2	5	55	1.37
33916580--33916605	7	3.7	7	100	0	52	26	0	15	57	1.38
33917252--33917294	18	2.4	18	84	0	50	18	25	9	46	1.79
33917845--33918902	21	49.7	21	83	5	1315	45	30	0	23	1.58
33917845--33918902	64	16.6	63	85	5	1315	45	30	0	23	1.58
33922421--33922469	16	2.9	16	81	6	53	51	2	0	46	1.12
33922417--33922466	24	2.1	24	85	7	66	54	2	0	44	1.11
33923400--33923447	22	2.3	22	82	10	57	41	4	6	47	1.48
33923450--33923495	23	2.1	23	88	8	69	58	0	0	41	0.98
33924530--33924554	8	3.1	8	100	0	50	36	0	0	64	0.94
33926178--33926212	18	2.0	17	94	5	61	42	0	0	57	0.99
33932397--33932542	43	3.4	43	92	0	229	26	29	21	22	1.99
33932894--33932942	21	2.3	21	85	0	62	4	40	18	36	1.70
33932913--33933059	66	2.2	66	85	2	188	14	27	16	40	1.88
33932940--33933082	66	2.2	66	82	2	162	18	25	15	41	1.89
33933359--33933441	38	2.2	38	97	0	157	56	8	9	25	1.59
33936253--33936295	15	2.9	15	78	0	50	58	0	2	39	1.11
33937223--33937280	26	2.2	26	96	0	107	41	3	15	39	1.64
33937653--33937677	12	2.1	12	100	0	50	60	8	8	24	1.52
33938080--33938125	24	1.9	24	91	8	76	28	0	43	28	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33938816--33938842	4	6.8	4	100	0	54	22	0	0	77	0.76
33939161--33939236	36	2.1	36	97	0	143	31	28	18	21	1.97
33939470--33939504	17	2.1	17	94	0	61	28	51	0	20	1.47
33939470--33939514	17	2.8	16	83	6	56	31	46	0	22	1.52
33940202--33940241	19	2.0	21	85	9	57	35	5	5	55	1.44
33940392--33940570	97	1.8	98	95	1	324	43	14	11	30	1.81
33940704--33940817	40	2.8	41	89	8	169	35	27	17	19	1.94
33944254--33945194	467	2.0	469	94	2	1649	30	8	11	49	1.69
33946298--33946398	44	2.2	46	85	3	143	12	34	8	43	1.74
33946380--33946416	18	2.1	18	94	0	65	8	40	5	45	1.56
33950294--33950353	9	6.9	9	79	11	54	48	16	0	35	1.47
33950530--33950567	13	2.9	13	100	0	76	55	5	0	39	1.23
33950569--33950635	35	1.9	35	93	0	116	44	11	5	37	1.66
33950657--33950751	45	2.1	45	92	0	154	46	15	2	35	1.58
33952332--33952431	49	2.0	49	96	0	182	22	9	32	37	1.85
33961551--33961593	13	3.1	14	84	12	54	60	0	0	39	0.97
33964338--33964405	23	2.8	25	80	11	77	55	1	1	41	1.18
33964386--33964418	16	2.1	16	94	0	57	60	0	0	39	0.97
33964886--33964953	23	2.8	25	80	11	77	55	1	1	41	1.18
33964934--33964966	16	2.1	16	94	0	57	60	0	0	39	0.97
33963991--33965085	548	2.0	547	99	0	2172	41	9	9	39	1.70
33965295--33965362	23	2.8	25	80	11	77	55	1	1	41	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33965343--33965375	16	2.1	16	94	0	57	60	0	0	39	0.97
33964684--33965502	409	2.0	409	100	0	1638	42	9	10	37	1.72
33969124--33969163	21	2.0	21	85	5	55	37	12	7	42	1.71
33970000--33970054	28	2.0	28	81	0	65	32	16	10	40	1.83
33991331--33992624	646	2.0	647	99	0	2581	30	17	17	34	1.93
33994557--33994659	34	3.0	34	81	8	95	43	18	7	30	1.78
33994569--33994659	17	5.4	17	79	7	78	45	19	6	28	1.76
33994611--33994672	17	3.7	16	80	4	52	45	24	4	25	1.73
33994603--33994672	34	2.1	34	83	5	88	45	22	5	25	1.74
33995614--33995679	35	1.9	33	82	11	80	46	13	3	36	1.59
33998409--33998442	5	7.0	5	86	6	52	79	2	17	0	0.86
33998409--33998442	14	2.3	15	90	5	52	79	2	17	0	0.86
34000531--34000626	42	2.3	42	83	0	120	22	22	31	22	1.99
34011140--34011284	68	2.1	69	81	6	170	51	3	5	39	1.42
34025493--34025535	10	4.0	10	82	11	50	23	30	0	46	1.52
34025493--34025552	11	5.5	11	84	5	68	25	26	1	46	1.62
34027653--34027700	21	2.3	22	82	17	66	31	41	18	8	1.80
34027833--34027953	49	2.5	49	97	0	224	44	4	7	43	1.51
34027836--34028041	49	4.5	43	76	12	130	45	6	6	41	1.56
34028703--34028747	20	2.2	20	100	0	90	26	44	8	20	1.80
34030049--34030168	59	2.0	59	96	0	222	30	15	19	35	1.92
34031221--34031507	125	2.3	124	92	0	475	28	21	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34031670--34031720	9	6.3	9	76	19	51	56	33	0	9	1.32
34031684--34031726	22	2.0	22	95	4	79	51	39	0	9	1.34
34038736--34038794	31	1.9	31	89	0	91	49	5	5	40	1.47
34049024--34049219	95	2.1	95	90	1	304	29	25	16	28	1.97
34049346--34050070	99	7.3	99	90	1	1114	21	20	24	33	1.97
34049354--34050070	198	3.6	198	97	0	1328	21	20	25	33	1.97
34058469--34058660	96	2.0	96	100	0	384	28	21	18	31	1.97
34082355--34082551	38	5.1	38	78	1	169	15	20	28	34	1.94
34082355--34082514	76	2.1	76	87	1	223	15	20	28	35	1.94
34082488--34082574	41	2.1	41	84	0	120	17	21	26	34	1.95
34084109--34084148	19	2.1	19	86	9	55	55	7	5	32	1.50
34089869--34089894	9	2.9	9	100	0	52	34	0	34	30	1.58
34093791--34093826	16	2.2	16	90	0	54	11	2	5	80	0.98
34111088--34111198	19	5.8	19	88	4	170	39	9	14	36	1.79
34111276--34111488	106	2.0	107	97	0	401	39	12	24	23	1.89
34119051--34119161	19	5.8	19	89	0	177	39	9	13	37	1.76
34119058--34119161	38	2.7	38	98	0	199	40	8	12	38	1.74
34119051--34119187	19	6.9	21	85	4	114	38	8	14	38	1.76
34125214--34125263	16	2.9	18	77	17	61	10	4	14	72	1.26
34137165--34137230	32	2.0	33	85	8	89	60	6	9	24	1.49
34151260--34151306	17	2.8	17	80	0	58	25	17	23	34	1.96
34154633--34154664	4	8.0	4	100	0	64	50	0	25	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34154672--34154751	26	3.3	23	78	8	70	65	5	3	26	1.30
34154672--34154741	26	2.9	24	83	8	72	62	4	4	28	1.33
34154697--34154741	23	2.0	23	86	4	65	64	6	0	28	1.19
34155175--34155203	5	5.8	5	100	0	58	82	0	0	17	0.66
34156418--34157400	128	7.7	128	88	2	1335	25	23	18	32	1.97
34158641--34158677	15	2.4	16	78	13	51	16	13	0	70	1.17
34159514--34159538	8	3.1	8	100	0	50	0	24	0	76	0.80
34159546--34159620	6	12.7	6	80	8	64	14	5	9	70	1.31
34159565--34159625	29	2.1	29	84	0	77	13	1	9	75	1.12
34159593--34159627	12	2.9	12	86	0	52	8	0	14	77	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145