genome.fa.s2.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  15  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5039965--5040017	24	2.2	25	89	3	81	26	20	5	47	1.72
5043146--5043198	18	2.9	18	83	8	63	79	3	15	1	0.96
5044074--5044217	46	3.0	49	70	8	159	33	25	19	22	1.97
5044074--5044207	50	2.8	48	75	5	146	34	25	17	22	1.96
5044227--5044986	100	7.6	100	87	1	975	31	21	20	26	1.98
5044227--5044968	50	14.8	50	72	3	461	31	21	20	26	1.98
5045057--5045577	45	11.7	44	72	11	285	30	18	23	28	1.98
5045094--5045445	178	2.0	178	87	0	506	30	18	24	26	1.98
5049417--5049445	13	2.1	14	93	6	51	58	0	0	41	0.98
5054089--5054122	17	2.1	17	88	5	52	32	17	0	50	1.47
5054858--5054902	3	15.0	3	80	0	54	33	2	2	62	1.20
5054983--5055028	23	2.0	24	91	4	76	39	10	0	50	1.38
5054970--5055031	27	2.3	27	88	5	90	35	8	3	53	1.47
5055080--5055126	20	2.4	19	76	13	51	38	10	0	51	1.37
5067564--5068289	99	7.3	99	84	0	880	31	23	21	24	1.98
5067572--5068289	297	2.4	297	85	2	976	31	23	21	24	1.98
5067564--5068434	148	5.9	148	71	4	532	31	23	21	24	1.98
5068021--5068529	247	2.1	247	89	0	766	31	22	21	24	1.98
5067572--5068388	297	2.7	294	80	5	910	31	23	21	24	1.98
5068268--5069236	99	9.7	99	85	0	1137	32	21	20	26	1.98
5067915--5068636	346	2.1	347	87	0	1034	31	22	20	24	1.98
5067608--5069233	50	32.8	50	69	5	839	32	22	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5070898--5070961	3	21.3	3	80	6	76	29	6	0	64	1.18
5070895--5070961	24	2.8	24	86	4	91	28	5	0	65	1.16
5070960--5070991	3	10.7	3	100	0	64	34	31	0	34	1.58
5075781--5075840	23	2.6	23	84	10	86	20	8	18	53	1.70
5076355--5076387	10	3.5	10	92	8	52	63	6	6	24	1.40
5081335--5081429	45	2.1	44	84	5	120	37	27	4	30	1.76
5081408--5081461	16	3.4	16	89	0	81	29	35	1	33	1.69
5091302--5091329	6	4.7	6	100	0	56	32	0	17	50	1.47
5094856--5096163	4	326.8	4	99	0	2598	25	0	25	49	1.51
5098643--5098995	126	2.8	125	90	1	548	30	15	21	31	1.95
5102205--5102240	11	3.2	11	96	4	63	44	0	36	19	1.51
5104980--5105069	22	4.2	22	79	11	105	32	25	1	41	1.63
5105071--5105112	22	1.9	22	90	0	66	33	35	0	30	1.58
5105154--5105209	28	2.0	29	92	3	96	37	0	1	60	1.07
5105154--5105217	28	2.2	29	88	2	94	37	0	1	60	1.06
5110154--5110399	124	2.0	125	88	4	372	32	23	14	29	1.94
5110792--5111243	224	2.0	224	100	0	904	36	10	9	42	1.73
5115350--5115410	19	3.4	17	77	20	61	60	1	1	36	1.16
5120373--5120443	22	3.2	22	81	2	88	38	16	25	19	1.93
5120445--5120497	20	2.6	21	87	3	72	32	18	30	18	1.96
5123593--5123617	7	3.6	7	100	0	50	0	12	0	88	0.53
5125969--5126031	30	2.1	30	100	0	126	36	9	14	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5136821--5136859	19	2.1	19	90	9	62	51	5	10	33	1.58
5137717--5137888	85	2.0	86	98	1	337	41	10	10	37	1.74
5139825--5139885	20	3.1	20	73	19	56	39	4	1	54	1.32
5163455--5163554	52	1.9	51	95	2	182	17	17	24	42	1.89
5169152--5169759	202	3.0	202	97	0	1126	37	15	11	35	1.83
5173914--5174077	82	2.0	83	98	1	321	51	3	12	31	1.57
5185057--5185102	19	2.3	20	85	7	58	39	0	10	50	1.38
5188532--5188584	27	2.0	27	100	0	106	30	3	16	49	1.64
5189432--5189824	214	1.8	216	91	1	646	33	14	14	37	1.86
5190101--5190291	95	2.0	95	94	0	337	30	17	13	38	1.88
5194953--5194977	6	4.2	6	100	0	50	0	16	52	32	1.44
5200205--5200237	2	17.0	2	93	6	59	48	0	0	51	1.00
5201969--5202082	45	2.6	45	76	8	117	35	21	21	21	1.96
5203858--5203882	7	3.6	7	100	0	50	0	16	60	24	1.36
5204510--5204567	29	2.1	28	81	12	66	24	10	13	51	1.72
5204858--5204910	20	2.7	20	85	2	81	62	1	0	35	1.06
5206060--5206111	18	2.7	18	79	8	59	25	0	7	67	1.17
5206940--5206970	16	1.9	16	93	0	53	41	3	0	54	1.16
5206935--5206977	19	2.2	19	87	8	59	41	4	0	53	1.21
5208711--5208954	39	6.3	39	89	0	362	34	14	19	32	1.92
5211618--5211720	40	2.6	40	87	6	122	39	16	0	42	1.55
5211643--5211790	13	11.2	13	76	7	120	35	16	2	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5211804--5212075	135	2.0	135	97	0	508	36	18	5	40	1.73
5234983--5235031	24	2.0	24	88	0	71	44	0	34	20	1.52
5239592--5239655	27	2.4	27	89	5	94	17	25	39	18	1.92
5239876--5239913	19	2.0	19	89	0	58	50	7	5	36	1.54
5240492--5240553	27	2.3	27	97	0	115	14	33	22	29	1.94
5245902--5246030	61	2.2	58	80	8	145	55	6	9	29	1.56
5261005--5261059	19	2.8	20	80	2	67	67	3	1	27	1.17
5261641--5261688	19	2.8	16	84	15	60	22	6	4	66	1.32
5264395--5264423	10	2.7	11	94	5	51	17	0	0	82	0.66
5277655--5277715	21	2.9	20	80	9	68	19	29	3	47	1.65
5281457--5281492	18	1.9	19	88	5	56	13	8	2	75	1.15
5282453--5282481	13	2.1	14	93	6	51	17	0	0	82	0.66
5282940--5282973	16	2.1	16	88	0	50	64	11	0	23	1.26
5286166--5286234	31	2.2	31	92	0	111	42	10	14	33	1.79
5291706--5291882	88	2.0	89	98	1	347	38	4	11	45	1.60
5299663--5299696	7	4.9	7	96	0	59	73	23	0	2	0.97
5300406--5300449	23	2.0	22	95	4	79	15	9	4	70	1.30
5302060--5302115	26	2.2	26	83	6	69	32	19	7	41	1.79
5302074--5302132	26	2.3	26	90	0	91	33	16	10	38	1.83
5312047--5312783	50	14.8	50	65	6	303	30	21	22	25	1.99
5312024--5312783	100	7.6	100	84	1	918	30	21	22	25	1.99
5314707--5314732	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5315063--5315112	26	1.9	26	100	0	100	38	8	16	38	1.78
5318227--5318264	11	3.5	11	82	3	51	36	0	0	63	0.95
5322397--5322458	29	2.1	29	82	11	74	58	4	0	37	1.20
5322403--5322462	19	2.9	21	80	16	72	55	5	0	40	1.22
5322410--5322458	10	5.1	9	87	9	53	53	6	0	40	1.26
5323458--5323491	14	2.5	14	90	4	52	79	2	2	14	0.97
5323582--5323653	3	23.7	3	83	5	65	56	0	5	37	1.22
5324846--5324878	16	2.1	16	94	0	57	39	18	0	42	1.50
5327798--5327904	19	5.8	19	77	16	118	37	10	14	37	1.81
5327807--5327910	32	3.0	32	79	13	100	37	9	14	38	1.79
5327883--5327927	23	2.0	23	91	4	74	37	4	17	40	1.70
5327893--5327937	23	2.0	23	86	4	65	33	4	15	46	1.66
5333482--5333768	44	6.7	42	74	11	235	28	21	22	26	1.99
5333481--5333765	89	3.3	82	75	11	218	29	22	22	26	1.99
5333781--5334245	132	3.5	132	90	1	761	27	16	23	31	1.96
5343121--5343151	13	2.3	14	94	5	55	22	6	19	51	1.69
5347036--5347203	50	3.3	50	88	2	239	30	15	24	29	1.96
5348912--5349005	47	2.0	47	85	2	125	28	30	15	24	1.96
5352947--5352988	18	2.3	18	80	8	50	66	7	0	26	1.17
5354635--5354757	40	3.0	40	85	2	156	29	22	24	23	1.99
5354635--5354780	40	3.6	41	85	5	131	27	22	24	25	2.00
5354850--5355234	110	3.7	97	90	5	364	38	1	19	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5355027--5355063	7	5.3	7	100	0	74	13	0	40	45	1.43
5354930--5355234	110	2.8	110	97	0	574	37	0	20	40	1.60
5355137--5355173	7	5.3	7	100	0	74	13	0	40	45	1.43
5355824--5355973	80	1.9	78	87	2	219	22	22	25	29	1.99
5355787--5355972	40	4.7	40	82	2	196	23	22	25	28	1.99
5360347--5360459	55	2.0	56	98	1	219	37	15	7	39	1.75
5361245--5361334	46	2.0	45	97	2	171	31	32	4	32	1.78
5362343--5362452	43	2.6	42	83	7	134	31	29	19	20	1.96
5363853--5363892	20	2.0	21	90	5	64	32	0	0	67	0.91
5364306--5364436	60	2.2	61	81	5	158	36	3	15	45	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145