genome.fa.s2.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  113  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37935502--37935545	22	2.0	22	100	0	88	45	4	0	50	1.22
37935499--37935568	22	3.0	22	85	10	79	45	7	1	45	1.39
37937684--37937727	23	1.9	22	82	17	54	36	25	0	38	1.56
37943094--37943146	14	3.8	14	80	7	63	35	22	11	30	1.89
37943094--37943154	14	4.4	14	80	0	59	34	22	11	31	1.90
37952771--37952831	26	2.3	26	94	0	104	27	37	3	31	1.73
37954444--37954558	44	2.6	44	84	10	139	27	15	17	39	1.90
37956444--37956478	17	2.0	17	88	5	52	14	45	28	11	1.79
37956512--37956549	17	2.2	18	90	4	60	18	34	23	23	1.96
37966500--37966549	21	2.4	21	96	3	93	62	4	0	34	1.14
37977450--37977474	9	2.8	9	100	0	50	24	0	0	76	0.80
37977566--37977590	9	2.8	9	100	0	50	24	0	0	76	0.80
37977422--37977653	116	2.0	117	97	2	441	36	7	3	53	1.45
37982721--37982859	41	3.4	41	79	3	145	33	16	20	29	1.95
37984022--37984059	5	7.6	5	91	8	60	18	0	0	81	0.69
37984028--37984058	9	3.3	9	95	4	53	19	0	0	80	0.71
37984022--37984059	14	2.5	15	91	8	60	18	0	0	81	0.69
37985031--37985116	3	29.0	3	72	6	68	30	8	1	60	1.33
37986925--37986970	23	2.1	22	88	8	67	30	8	4	56	1.49
37987405--37987446	19	2.2	20	82	4	50	30	7	11	50	1.66
37994694--37994748	26	2.1	26	96	0	101	29	14	32	23	1.94
37999325--38000358	44	23.8	42	71	15	454	28	20	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37999321--37999999	217	3.1	217	92	1	1087	28	21	23	26	1.99
37999849--38000132	133	2.1	133	88	2	419	29	20	25	24	1.99
37999634--38000365	350	2.1	350	91	2	1193	28	20	24	26	1.99
38001810--38001852	21	1.9	23	86	13	63	32	6	6	53	1.55
38001812--38001857	23	2.1	22	88	8	67	30	6	6	56	1.50
38003336--38003397	3	20.3	3	81	15	74	62	0	1	35	1.05
38003335--38003405	18	4.1	18	78	14	85	61	1	1	35	1.13
38004858--38005441	50	11.7	50	65	7	218	23	24	21	29	1.99
38004825--38005431	100	6.1	100	88	0	842	24	24	21	29	1.99
38005623--38005800	88	2.0	88	85	2	241	24	26	21	27	1.99
38007099--38007159	10	6.3	9	73	14	50	11	3	8	77	1.11
38007093--38007159	19	3.5	18	78	13	62	10	4	7	77	1.10
38007099--38007178	33	2.4	34	74	15	80	12	3	8	75	1.17
38011688--38011783	3	30.3	3	71	21	63	60	3	4	32	1.31
38011687--38011755	15	4.7	15	77	13	72	60	1	2	34	1.20
38011688--38011756	22	3.1	24	81	10	85	60	1	2	34	1.20
38011733--38011766	14	2.3	15	90	5	52	58	5	8	26	1.51
38011688--38011784	43	2.3	43	83	3	115	60	3	4	31	1.31
38020248--38020272	12	2.1	12	100	0	50	24	32	8	36	1.84
38020850--38021712	132	6.6	133	87	4	1096	30	19	25	25	1.98
38021285--38021664	122	3.0	122	82	9	449	31	19	24	25	1.98
38021724--38021837	51	2.2	51	84	0	138	28	20	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38022548--38022580	5	6.6	5	89	10	50	18	0	0	81	0.68
38022554--38022580	14	1.9	14	100	0	54	18	0	0	81	0.69
38023264--38023301	20	1.9	19	89	5	58	23	7	0	68	1.16
38023263--38023332	24	2.9	24	72	18	65	24	8	0	67	1.19
38023527--38023612	3	29.0	3	72	6	68	30	6	2	60	1.35
38026963--38027055	33	3.2	28	66	19	73	44	5	3	47	1.42
38026916--38027050	59	2.3	59	92	0	225	42	6	3	46	1.47
38035993--38036130	66	2.1	65	85	5	179	42	19	24	13	1.88
38037864--38037904	20	2.0	20	85	0	55	46	2	9	41	1.50
38038587--38038639	19	2.8	20	78	21	60	35	1	5	56	1.34
38038795--38038852	18	3.4	18	68	20	52	51	1	8	37	1.43
38038707--38038905	106	1.9	101	83	7	256	44	6	9	39	1.63
38047437--38047507	33	2.1	34	97	2	135	35	18	16	29	1.93
38052702--38052731	3	10.0	3	100	0	60	33	0	0	66	0.92
38053541--38053579	19	2.2	19	86	9	55	0	10	17	71	1.12
38064550--38064682	68	2.0	67	91	4	214	21	6	21	49	1.72
38073005--38073209	96	2.1	97	82	4	254	39	5	19	36	1.74
38073249--38073503	126	2.0	126	92	1	422	32	17	21	27	1.96
38073396--38073611	108	2.0	108	94	1	380	32	16	20	30	1.95
38076830--38076919	34	2.6	34	82	5	101	43	4	6	45	1.50
38077332--38077374	18	2.4	18	88	0	59	41	9	30	18	1.82
38078028--38078056	13	2.2	13	100	0	58	37	27	6	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38078426--38078460	14	2.4	15	85	9	54	37	11	22	28	1.89
38078434--38078466	14	2.4	14	95	5	59	36	6	18	39	1.75
38079065--38079147	25	3.3	25	91	3	123	37	22	21	18	1.94
38079704--38079736	17	1.9	17	100	0	66	60	9	6	24	1.49
38085843--38086049	104	2.0	105	94	2	364	32	16	18	32	1.93
38086387--38086466	25	3.2	25	87	3	108	37	20	22	20	1.94
38087595--38087652	5	11.6	5	74	20	50	58	3	1	36	1.25
38088936--38088965	15	2.0	15	93	0	51	80	3	0	16	0.85
38090811--38090860	20	2.5	21	78	12	52	0	32	4	64	1.12
38093729--38094131	126	3.3	118	84	10	503	32	19	20	27	1.97
38098394--38098418	7	3.6	7	100	0	50	60	12	0	28	1.32
38099587--38099645	11	5.4	11	76	15	59	42	1	33	22	1.63
38099600--38099646	23	2.0	23	92	8	78	42	0	34	23	1.54
38099606--38099649	10	4.1	10	80	13	52	43	0	31	25	1.55
38106683--38106709	5	5.4	5	100	0	54	18	0	0	81	0.69
38107193--38107221	2	15.0	2	92	7	51	48	0	0	51	1.00
38127041--38127379	186	1.8	186	84	7	469	36	5	15	42	1.70
38134420--38134459	15	2.5	15	88	8	53	72	7	2	17	1.19
38134504--38134558	28	2.1	26	83	12	69	76	0	3	20	0.94
38137509--38137877	183	2.0	184	99	0	731	36	4	7	51	1.52
38137837--38137877	21	1.9	22	85	5	57	26	2	7	63	1.33
38138325--38138388	13	4.9	13	78	14	78	31	7	25	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38138325--38138389	26	2.5	27	85	7	89	32	7	24	35	1.84
38139496--38140088	297	2.0	297	97	0	1123	37	18	16	27	1.92
38144801--38144852	27	1.9	27	92	0	86	61	5	25	7	1.45
38147583--38147626	20	2.2	20	84	8	54	72	4	4	18	1.19
38147632--38147661	14	2.1	15	93	6	53	70	0	3	26	1.03
38147754--38147800	22	2.3	19	82	13	58	55	6	2	36	1.37
38147756--38147806	20	2.4	22	87	9	70	54	7	1	35	1.40
38148615--38148650	18	1.9	19	88	5	56	50	5	0	44	1.25
38164540--38164585	16	2.9	16	79	20	53	52	2	2	43	1.25
38165414--38165452	20	2.0	20	85	10	53	74	7	12	5	1.20
38165628--38165671	22	2.0	22	86	8	63	2	13	13	70	1.26
38165721--38165755	18	1.9	18	88	0	52	17	20	45	17	1.85
38170496--38170557	30	2.1	30	93	0	106	38	6	12	41	1.69
38170502--38170558	17	3.6	17	72	18	59	40	8	10	40	1.71
38177668--38177695	14	2.0	14	100	0	56	35	14	14	35	1.86
38181586--38181610	2	12.5	2	100	0	50	48	0	52	0	1.00
38184970--38185192	111	2.0	112	99	0	439	43	8	2	44	1.49
38186381--38186416	17	2.1	17	90	10	56	55	2	0	41	1.14
38188294--38188322	11	2.6	11	100	0	58	62	0	0	37	0.96
38188304--38188337	17	2.0	17	88	0	50	70	0	0	29	0.87
38188281--38188337	29	2.0	29	93	3	98	64	0	0	35	0.93
38189173--38189280	55	2.0	55	84	0	144	34	17	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38192398--38192542	48	3.1	48	67	13	149	57	5	4	33	1.41
38192383--38192565	91	2.0	92	98	1	359	59	5	4	31	1.40
38192417--38192556	43	3.1	43	67	23	126	60	3	4	31	1.33
38193765--38193798	16	2.1	16	88	0	50	26	2	0	70	1.01
38199533--38199573	21	1.9	23	85	14	61	26	19	19	34	1.96
38203230--38203282	27	1.9	28	84	3	72	16	5	15	62	1.51
38205180--38205268	45	2.0	45	100	0	178	35	11	12	40	1.79
38205424--38205453	14	2.1	14	93	0	51	46	10	13	30	1.75
38206700--38206739	21	1.9	21	84	0	53	5	42	12	40	1.64
38210187--38210221	17	2.1	17	94	0	61	40	14	11	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145