genome.fa.s2.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  44  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14294718--14294748	10	3.0	10	95	4	53	77	0	0	22	0.77
14295433--14295459	6	4.5	6	100	0	54	18	18	14	48	1.82
14295394--14295556	51	3.3	51	82	8	219	19	19	20	41	1.91
14295530--14295572	6	6.8	6	86	2	50	16	20	16	46	1.84
14303968--14304008	16	2.3	18	76	20	50	7	7	2	82	0.91
14313547--14313642	33	2.9	33	95	0	174	65	16	3	14	1.39
14313548--14313636	12	7.9	11	70	20	51	65	16	3	14	1.41
14319783--14319826	20	2.2	20	91	0	70	15	38	22	22	1.92
14324281--14324318	20	1.9	20	100	0	76	15	36	21	26	1.93
14326189--14326325	49	2.8	49	82	4	150	27	22	17	32	1.96
14327151--14327190	19	2.0	20	90	4	64	50	0	5	45	1.23
14327162--14327194	10	3.4	10	87	4	50	54	0	3	42	1.15
14327504--14327543	4	10.2	4	84	15	57	50	0	0	50	1.00
14327492--14327543	27	1.9	27	84	7	70	50	0	1	48	1.12
14327492--14327551	15	4.2	14	79	16	61	48	0	3	48	1.18
14327061--14327758	355	2.0	345	91	3	1130	34	13	14	37	1.85
14328600--14328734	49	2.8	49	82	0	144	23	24	17	34	1.95
14331093--14331149	27	2.1	27	83	6	71	57	22	7	12	1.58
14333578--14333611	12	2.8	12	86	0	50	50	17	11	20	1.77
14334755--14334799	18	2.5	18	85	7	65	33	8	15	42	1.78
14335255--14335415	79	2.0	80	98	1	315	40	7	4	46	1.54
14335567--14335617	27	1.9	27	84	4	68	72	3	0	23	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14342050--14342137	35	2.4	36	75	17	92	54	6	6	31	1.53
14343567--14343628	27	2.3	27	88	0	97	19	25	30	24	1.98
14343715--14343753	21	1.9	20	94	5	69	74	0	25	0	0.82
14343715--14343754	10	3.8	11	90	9	66	75	0	25	0	0.81
14344479--14344523	18	2.5	18	92	0	72	28	6	51	13	1.66
14349833--14350010	10	18.6	10	71	18	107	0	30	0	69	0.89
14349805--14350010	44	4.8	44	88	10	302	0	30	0	69	0.89
14349855--14350010	82	1.9	82	88	7	235	0	30	0	69	0.89
14350054--14350118	27	2.4	27	100	0	130	21	36	27	13	1.92
14351166--14351220	26	2.2	25	83	9	67	41	3	7	47	1.49
14351166--14351220	25	2.2	26	83	9	69	41	3	7	47	1.49
14352588--14352624	20	2.0	20	84	10	51	51	2	8	37	1.46
14366479--14366530	18	2.7	20	82	14	72	71	0	25	3	1.03
14366464--14366531	28	2.3	29	85	10	84	72	0	23	4	1.03
14366711--14366747	14	2.6	14	95	0	65	24	45	21	8	1.78
14367308--14367518	18	11.8	18	69	15	127	32	16	9	41	1.81
14367320--14367555	36	6.7	33	73	15	145	33	15	9	41	1.79
14367424--14367577	20	8.3	19	68	17	90	35	14	9	40	1.78
14367420--14367575	36	4.2	36	79	5	170	33	15	8	41	1.78
14367333--14367575	17	13.5	17	70	13	130	33	15	9	41	1.80
14367653--14367883	17	12.8	17	72	12	149	30	14	11	43	1.81
14367653--14367884	36	6.4	36	77	11	208	30	14	11	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14367653--14367846	54	3.6	53	75	10	171	29	14	11	43	1.81
14367649--14367885	73	3.3	72	79	10	236	30	14	11	43	1.81
14367653--14367900	37	6.8	37	77	9	172	30	15	11	42	1.82
14367753--14367902	38	4.0	37	81	6	178	32	15	10	42	1.80
14367908--14367967	17	3.4	18	80	8	70	41	5	8	45	1.56
14367910--14367981	36	2.0	36	86	8	101	40	2	11	45	1.54
14367910--14368006	20	5.1	19	74	10	74	41	7	10	41	1.67
14380615--14380649	18	2.0	17	88	5	52	45	0	0	54	0.99
14380885--14380920	16	2.2	16	100	0	72	38	36	0	25	1.56
14382670--14382707	13	2.9	13	92	0	67	28	13	18	39	1.88
14387732--14387788	25	2.3	25	87	0	78	42	17	21	19	1.90
14388871--14388934	31	2.1	31	86	11	89	25	10	1	62	1.37
14391047--14391194	29	5.0	29	82	8	174	35	22	2	39	1.68
14391047--14391194	30	5.0	29	81	6	181	35	22	2	39	1.68
14391047--14391194	59	2.5	58	81	7	190	35	22	2	39	1.68
14391306--14391338	9	3.5	10	88	12	52	84	0	15	0	0.61
14391305--14391338	10	3.6	9	88	11	50	85	0	14	0	0.60
14391491--14391541	24	2.2	23	85	3	66	68	5	13	11	1.37
14391624--14391658	3	11.3	3	93	6	61	65	0	34	0	0.93
14391817--14391850	14	2.3	15	95	5	61	67	11	20	0	1.21
14392417--14392466	16	3.0	16	80	11	64	26	10	14	50	1.73
14392417--14392467	18	3.0	17	88	8	77	25	9	13	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14392430--14392479	18	2.8	18	90	0	64	22	12	10	56	1.65
14392498--14392555	18	3.2	17	80	9	71	41	13	10	34	1.79
14392474--14392553	37	2.2	35	84	13	99	36	16	10	37	1.82
14392474--14392574	36	2.7	38	78	15	113	35	16	9	37	1.82
14392597--14392696	18	5.6	17	69	16	62	27	12	11	50	1.73
14392597--14392721	36	3.5	36	77	7	103	28	12	10	48	1.73
14396898--14396940	16	2.6	16	77	3	50	41	20	4	32	1.73
14397357--14397583	113	2.0	114	99	0	447	47	4	7	40	1.53
14398999--14399039	15	2.8	16	78	14	52	26	2	7	63	1.33
14417416--14417448	15	2.2	15	94	0	57	30	0	21	48	1.50
14418524--14418564	20	2.0	20	85	0	55	63	4	0	31	1.15
14419237--14419317	11	7.4	11	86	9	94	22	34	0	43	1.54
14421427--14421466	21	1.9	21	84	0	53	32	42	17	7	1.77
14424801--14425587	126	6.2	126	95	0	1376	26	21	18	34	1.96
14427952--14428019	30	2.2	31	84	2	84	26	17	7	48	1.73
14428150--14428675	262	2.0	263	99	0	1045	42	7	7	43	1.60
14429353--14429387	2	17.0	2	94	5	61	48	0	2	48	1.16
14441345--14441378	9	3.9	9	96	3	61	67	0	11	20	1.21
14443660--14443695	18	2.0	18	94	0	63	41	22	33	2	1.68
14445662--14445693	15	2.1	15	94	0	55	12	31	0	56	1.37
14450672--14450716	23	1.9	24	86	4	65	22	15	15	46	1.83
14453725--14453754	15	2.0	15	93	0	51	26	23	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14466984--14467022	17	2.3	17	86	8	53	56	5	0	38	1.22
14471184--14471228	22	2.0	22	83	8	56	35	2	2	60	1.22
14472729--14472754	3	8.7	3	100	0	52	65	0	34	0	0.93
14477867--14477931	28	2.3	28	80	15	80	56	9	9	24	1.60
14496198--14496481	125	2.3	125	85	3	410	27	18	23	29	1.98
14499493--14500746	22	59.4	21	67	15	393	21	0	29	48	1.56
14499494--14499588	21	4.4	21	74	11	77	17	0	29	52	1.45
14499618--14500061	7	61.9	7	66	20	77	23	0	27	47	1.57
14499628--14499718	37	2.4	37	87	1	128	20	0	27	51	1.48
14499607--14499696	15	5.6	15	70	23	67	20	0	28	51	1.48
14499611--14499718	15	7.3	15	68	14	55	19	0	29	50	1.48
14499756--14499802	15	3.2	15	81	3	60	25	0	23	51	1.49
14499791--14499908	28	4.5	26	72	16	91	24	0	24	50	1.55
14499687--14499858	84	2.0	85	83	8	217	25	0	27	46	1.53
14499757--14499918	78	2.1	79	83	5	204	25	1	24	49	1.58
14499886--14500061	15	12.2	14	66	23	66	21	1	28	48	1.60
14500007--14500075	15	4.7	15	78	10	70	21	0	27	50	1.49
14500134--14500175	15	3.0	14	76	13	50	26	0	30	42	1.55
14500096--14500193	28	3.5	26	78	12	97	25	0	32	41	1.56
14500143--14500194	14	3.7	14	79	7	61	23	0	30	46	1.53
14500380--14500451	36	2.0	35	89	7	110	20	1	27	50	1.57
14499885--14500427	87	6.3	85	71	13	274	21	0	29	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14500485--14500576	37	2.5	37	83	5	96	18	1	26	54	1.50
14500521--14500592	15	4.9	15	73	13	51	16	0	29	54	1.43
14500524--14500725	43	4.7	43	81	4	214	18	0	30	50	1.53
14500702--14500748	21	2.2	21	88	0	67	21	0	29	48	1.50
14500712--14500774	33	1.9	33	87	6	92	28	0	26	44	1.55
14500778--14500845	22	3.1	22	82	0	82	20	0	23	55	1.43
14500751--14500810	29	2.1	28	81	9	68	25	0	23	51	1.48
14501037--14501083	21	2.2	21	84	0	58	4	25	38	31	1.75
14501339--14501378	18	2.2	18	90	0	62	42	7	30	20	1.79
14503049--14503093	11	3.9	12	78	18	51	46	0	28	24	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145