genome.fa.s2.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  128  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42748561--42749892	666	2.0	666	100	0	2664	29	17	18	34	1.94
42751300--42751337	19	2.0	20	94	5	69	36	10	34	18	1.85
42753411--42753455	24	1.9	24	86	4	65	42	6	33	17	1.76
42764584--42764696	56	2.1	50	87	9	154	21	30	21	26	1.98
42772938--42773081	50	2.7	54	82	7	179	24	26	22	27	2.00
42777449--42777774	27	12.3	27	79	9	278	43	21	15	19	1.88
42777528--42777601	22	3.1	22	71	9	58	44	22	14	17	1.86
42778027--42778093	26	2.6	26	75	0	71	13	25	28	32	1.93
42778190--42778339	28	5.2	28	81	5	158	25	25	22	26	2.00
42779792--42779900	40	2.9	36	74	19	123	29	22	29	19	1.98
42783509--42783542	14	2.3	15	90	5	52	14	5	2	76	1.09
42792706--42792732	6	4.5	6	100	0	54	66	0	33	0	0.92
42795098--42795134	12	3.0	12	88	7	56	67	2	8	21	1.29
42795098--42795150	13	4.2	13	85	2	72	67	3	5	22	1.28
42795102--42795150	12	3.9	12	84	10	62	73	4	4	18	1.15
42802274--42802321	21	2.3	21	85	7	62	18	35	10	35	1.85
42811475--42811571	44	2.2	43	84	12	119	30	27	17	23	1.97
42816417--42816446	10	3.0	10	90	0	51	36	0	23	40	1.55
42830697--42830736	20	2.0	20	90	0	62	27	10	12	50	1.72
42830676--42830752	14	5.0	15	72	20	61	32	9	16	41	1.80
42831827--42831903	35	2.2	36	90	4	129	51	16	3	27	1.62
42831871--42831939	27	2.5	28	81	6	79	52	20	4	23	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42832701--42832746	23	2.0	23	95	0	83	10	41	17	30	1.84
42833763--42833807	19	2.4	18	85	7	63	44	0	2	53	1.13
42837309--42837418	54	2.0	54	86	6	152	46	13	7	32	1.71
42840940--42841037	27	3.6	27	85	0	142	19	8	30	41	1.80
42862458--42862493	16	2.2	17	90	5	56	36	0	52	11	1.37
42872784--42872828	23	2.0	23	100	0	90	33	8	17	40	1.81
42881235--42881264	16	1.9	16	93	6	53	30	0	20	50	1.49
42889120--42889160	15	2.6	16	75	17	50	53	7	4	34	1.50
42890705--42890861	50	3.1	50	73	3	181	25	16	24	33	1.96
42890655--42890909	100	2.5	100	91	0	411	23	17	24	33	1.96
42890721--42890880	50	3.2	50	73	3	178	25	16	23	34	1.96
42890653--42890909	50	5.1	50	71	3	158	23	17	24	33	1.96
42890974--42891213	44	5.5	44	72	11	165	29	21	19	30	1.97
42890938--42891212	129	2.1	129	91	1	444	29	21	19	29	1.97
42891201--42891436	131	1.8	130	87	0	337	24	24	22	28	2.00
42891500--42891834	87	3.9	87	87	0	447	26	23	21	28	1.99
42891500--42891834	173	1.9	174	86	0	474	26	23	21	28	1.99
42893936--42893984	20	2.5	21	83	9	59	8	20	2	69	1.24
42894001--42894040	19	2.2	18	86	4	53	7	2	7	82	0.92
42898487--42898527	15	2.6	16	75	17	50	53	7	4	34	1.50
42902521--42903462	468	2.0	469	86	1	1298	34	14	17	33	1.90
42906608--42906633	12	2.2	12	100	0	52	15	15	0	69	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42931761--42931912	49	3.0	51	83	5	175	28	13	23	34	1.93
42941081--42941367	29	9.8	29	78	8	269	21	28	13	35	1.92
42941080--42941340	88	3.0	88	93	0	416	21	28	14	36	1.92
42944866--42944897	12	2.4	14	85	15	50	40	0	25	34	1.56
42950325--42950391	33	2.0	33	100	0	134	34	14	11	38	1.84
42953940--42954111	86	2.0	86	96	0	317	40	14	4	41	1.65
42955496--42955682	51	3.7	50	73	7	180	32	28	16	22	1.95
42955494--42955678	101	1.8	101	87	3	273	32	28	16	22	1.95
42957206--42957275	35	2.0	35	100	0	140	51	25	2	20	1.61
42958493--42958574	42	2.0	42	82	4	103	30	23	15	30	1.96
42958977--42959006	15	2.1	15	93	6	53	6	16	0	76	0.99
42960894--42960979	45	1.9	45	95	0	154	33	24	16	25	1.95
42960990--42961176	51	3.7	50	73	7	180	32	28	16	22	1.95
42960988--42961172	101	1.8	101	87	3	273	32	28	16	22	1.95
42964465--42964496	16	2.0	16	93	0	55	34	9	18	37	1.83
42968682--42968717	5	7.2	5	100	0	72	61	0	0	38	0.96
42983512--42983611	42	2.4	42	87	0	146	24	28	21	27	1.99
42989490--42989548	25	2.4	24	80	11	57	38	3	1	55	1.26
42992038--42992124	26	3.5	26	73	19	76	31	19	24	25	1.98
43000860--43000908	11	4.5	11	81	0	53	30	53	6	10	1.59
43007117--43007157	20	2.0	20	100	0	82	53	14	4	26	1.61
43009114--43009161	22	2.2	22	85	7	62	4	18	4	72	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43009114--43009176	27	2.3	27	78	5	65	3	17	4	74	1.12
43009153--43009186	12	2.8	12	91	8	52	0	14	2	82	0.79
43009155--43009187	15	2.2	15	89	10	50	0	18	3	78	0.87
43010097--43010140	18	2.4	18	85	11	54	22	9	2	65	1.32
43010099--43010140	17	2.4	17	84	11	50	23	9	2	64	1.35
43013321--43013348	5	5.6	5	100	0	56	57	0	0	42	0.99
43013368--43013427	30	2.0	30	100	0	120	43	10	10	36	1.72
43016635--43016690	25	2.2	25	93	0	94	30	5	21	42	1.75
43025437--43025492	25	2.2	25	96	0	103	30	5	23	41	1.76
43031294--43031508	113	1.9	113	87	1	315	32	21	22	23	1.98
43042949--43042982	17	2.0	17	94	0	59	38	2	5	52	1.41
43045579--43045614	18	2.0	18	94	0	63	13	16	19	50	1.79
43055953--43056022	29	2.4	29	83	4	79	22	15	25	35	1.94
43055982--43056187	29	7.2	27	70	12	87	26	15	21	36	1.93
43055993--43056160	58	2.9	58	87	2	241	25	14	22	38	1.92
43055988--43056186	58	3.4	58	82	6	219	24	16	21	37	1.93
43056115--43056189	29	2.6	29	84	0	96	29	16	18	36	1.92
43057551--43057590	4	10.5	4	89	10	66	22	0	0	77	0.77
43057891--43057977	35	2.5	35	74	10	88	29	19	20	29	1.97
43062249--43062273	13	1.9	13	100	0	50	40	0	24	36	1.55
43062664--43062721	6	9.7	6	85	7	82	63	1	0	34	1.04
43062664--43062721	19	3.2	17	86	11	80	63	1	0	34	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43062660--43062721	25	2.7	23	83	11	81	64	1	0	33	1.03
43062678--43062736	30	2.0	30	83	6	75	67	1	3	27	1.16
43065632--43065657	12	2.2	12	100	0	52	53	0	23	23	1.46
43068888--43069079	38	5.1	38	84	0	222	16	17	30	35	1.92
43088620--43088766	79	1.9	79	89	0	231	35	14	23	26	1.94
43093418--43093479	30	2.1	30	100	0	124	29	6	24	40	1.80
43095055--43095183	51	2.5	52	89	3	190	26	14	30	28	1.95
43097526--43097583	28	2.1	28	100	0	116	18	20	39	20	1.92
43103900--43103934	13	2.6	14	90	4	54	14	14	2	68	1.32
43103899--43103937	14	2.8	13	84	7	51	15	15	2	66	1.36
43103974--43104027	12	4.7	12	86	9	69	18	3	7	70	1.26
43103974--43104015	22	1.9	22	90	9	68	16	4	7	71	1.26
43108294--43108333	20	2.0	20	95	0	71	55	12	15	17	1.70
43110929--43110965	19	1.9	19	88	0	56	59	0	32	8	1.27
43112375--43112400	13	2.0	13	100	0	52	0	30	7	61	1.24
43112567--43112808	50	4.9	50	86	1	290	21	30	22	25	1.99
43116054--43116345	50	5.8	50	99	0	575	25	23	28	22	1.99
43123610--43123704	50	1.9	50	91	0	154	24	23	31	21	1.98
43128418--43128483	25	2.7	24	75	11	71	34	16	22	25	1.95
43128528--43130015	744	2.0	744	100	0	2976	37	21	9	31	1.85
43133398--43133456	17	3.6	17	69	17	54	49	3	22	25	1.65
43133763--43133842	40	2.0	40	100	0	160	30	7	20	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43134903--43134936	15	2.3	15	94	0	59	38	20	5	35	1.77
43135640--43135692	25	2.1	25	86	6	72	20	15	22	41	1.89
43139636--43139857	108	2.1	108	90	3	349	28	24	16	30	1.97
43142630--43142748	36	3.3	36	76	8	118	15	15	29	40	1.87
43143621--43143791	54	3.2	54	85	5	202	26	25	27	20	1.99
43145874--43145983	41	2.7	41	88	2	168	33	21	21	22	1.97
43147656--43147686	15	2.1	15	100	0	62	12	41	6	38	1.69
43147883--43147935	24	2.3	23	75	18	56	37	0	3	58	1.16
43151498--43151542	3	15.0	3	92	0	63	37	35	26	0	1.57
43151489--43151539	15	3.4	15	83	0	66	37	35	25	1	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145