genome.fa.s2.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  114  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38211483--38211557	36	2.1	36	92	0	123	46	0	17	36	1.48
38211478--38211557	18	4.4	19	71	20	64	46	0	16	37	1.47
38211491--38211548	13	4.7	13	72	12	50	46	0	17	36	1.48
38211491--38211554	12	5.2	13	72	12	55	46	0	17	35	1.48
38212191--38212246	7	7.9	7	80	4	58	39	39	3	17	1.67
38212191--38212277	36	2.4	36	90	0	138	36	37	4	20	1.74
38212423--38212464	21	2.0	22	90	4	68	42	33	0	23	1.55
38212429--38212495	21	3.2	20	83	8	64	49	28	0	22	1.50
38212422--38212495	28	2.6	28	85	4	87	48	27	0	24	1.51
38212422--38212489	14	4.9	14	72	13	50	47	27	0	25	1.53
38212399--38212595	100	2.0	100	87	2	288	51	22	1	24	1.57
38212532--38212630	7	14.1	7	71	4	56	49	31	1	18	1.54
38212584--38212630	21	2.2	21	92	0	76	53	29	0	17	1.44
38215001--38215216	91	2.4	91	84	2	281	24	12	25	36	1.92
38220049--38220090	18	2.5	17	80	7	50	52	7	0	40	1.29
38220519--38220585	16	3.9	18	73	15	61	70	7	1	20	1.20
38221979--38222031	25	2.1	25	82	6	63	52	1	22	22	1.56
38269920--38269954	18	1.9	18	88	0	52	51	0	5	42	1.25
38271591--38271628	20	1.9	20	89	10	60	47	2	0	50	1.15
38274513--38274578	14	4.8	14	75	3	53	42	22	1	33	1.63
38274529--38274578	21	2.4	21	82	0	64	42	20	0	38	1.52
38278078--38278112	10	3.6	10	84	7	54	57	0	8	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38285201--38285249	20	2.5	20	75	0	53	59	4	2	34	1.28
38285536--38285665	19	7.2	18	75	13	74	31	2	1	64	1.15
38285579--38285644	20	3.3	20	81	8	73	37	3	1	57	1.23
38285571--38285615	20	2.3	19	88	3	63	42	0	2	55	1.12
38285536--38285665	9	14.4	9	72	14	83	31	2	1	64	1.15
38302713--38303145	131	3.4	131	96	2	781	42	16	7	33	1.76
38303107--38303354	110	2.3	110	79	6	270	39	15	10	34	1.81
38303433--38303675	132	1.8	131	83	2	317	38	16	9	34	1.82
38304301--38304347	24	2.0	24	91	0	76	48	0	10	40	1.38
38305687--38305750	31	2.1	31	82	5	76	29	15	23	31	1.95
38309400--38309534	66	2.0	67	98	1	263	35	8	13	42	1.75
38313324--38313362	20	2.0	20	84	0	51	41	10	20	28	1.85
38316447--38316488	2	21.0	2	100	0	84	50	0	0	50	1.00
38320409--38320639	114	2.0	114	94	0	408	28	15	24	31	1.96
38324466--38324504	19	2.0	20	90	5	62	35	2	2	58	1.25
38324471--38324526	29	1.9	29	88	0	85	32	1	1	64	1.14
38329107--38329172	3	22.0	3	100	0	132	33	0	0	66	0.92
38329174--38329201	3	9.3	3	100	0	56	35	32	0	32	1.58
38350221--38350256	12	3.0	12	83	0	54	63	0	19	16	1.30
38350419--38350475	26	2.2	26	80	0	69	40	7	17	35	1.77
38362123--38362441	102	3.0	103	81	10	351	39	15	16	28	1.89
38362115--38362437	107	3.1	99	81	12	353	41	14	16	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38363197--38363378	89	2.0	88	86	6	251	34	19	9	36	1.84
38363445--38363486	20	2.0	20	86	4	57	73	2	2	21	1.06
38363464--38363512	8	5.6	8	77	17	53	71	4	2	22	1.13
38363462--38363512	17	2.8	18	79	8	59	72	3	1	21	1.11
38363463--38363522	28	2.1	28	87	6	86	71	3	1	23	1.10
38363463--38363513	18	2.8	18	79	8	59	72	3	1	21	1.11
38363785--38363828	18	2.4	19	81	14	56	38	0	4	56	1.20
38364810--38364971	82	2.0	82	88	2	245	26	12	18	42	1.86
38366710--38366750	13	3.2	13	85	0	55	68	2	29	0	1.03
38366713--38366751	17	2.3	17	91	8	62	66	2	30	0	1.05
38367606--38367682	14	5.0	15	71	20	52	42	14	9	33	1.77
38367622--38367661	20	2.0	20	90	0	62	50	12	10	27	1.72
38367610--38367676	34	1.9	35	90	3	109	46	13	8	31	1.74
38368229--38368321	18	4.7	18	69	22	62	50	1	24	23	1.56
38368271--38368330	20	3.2	18	81	11	59	51	0	25	23	1.48
38368513--38368551	18	2.2	18	100	0	78	15	20	12	51	1.76
38372190--38372264	37	2.0	37	92	0	123	6	22	13	57	1.59
38385223--38385261	6	6.8	6	88	5	55	87	12	0	0	0.55
38385222--38385261	7	5.7	7	82	11	55	87	12	0	0	0.54
38385220--38385255	16	2.3	16	95	4	65	88	11	0	0	0.50
38385751--38385800	23	2.2	23	85	7	66	68	0	20	12	1.21
38387263--38387506	133	1.8	133	91	1	409	28	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38394645--38394690	24	1.9	24	86	0	65	45	17	26	10	1.81
38399940--38400005	19	3.5	19	91	0	114	39	9	13	37	1.77
38399934--38400031	19	4.9	21	83	6	91	38	7	14	39	1.73
38401534--38401558	2	12.5	2	100	0	50	52	0	0	48	1.00
38407943--38408017	37	2.0	38	97	2	143	53	13	5	28	1.61
38408052--38408098	10	4.5	11	77	17	55	36	2	0	61	1.08
38416507--38416544	18	2.1	18	100	0	76	52	5	5	36	1.47
38416611--38416656	23	2.0	23	100	0	92	26	13	21	39	1.90
38420525--38420570	24	1.9	24	86	8	67	47	4	6	41	1.49
38420536--38420587	24	2.2	24	82	0	59	50	5	3	40	1.45
38424948--38424999	24	2.2	24	86	6	70	48	7	3	40	1.50
38425618--38425661	20	2.2	20	87	0	61	47	6	15	29	1.72
38426040--38426081	20	2.0	21	90	9	68	26	7	33	33	1.83
38427318--38427355	20	1.9	20	88	0	58	39	7	0	52	1.31
38427762--38427794	4	8.2	4	100	0	66	24	0	0	75	0.80
38428338--38428644	108	2.9	108	93	0	519	31	16	18	33	1.93
38433445--38433513	29	2.3	29	80	11	70	40	2	0	56	1.14
38436378--38436600	110	2.0	111	98	0	430	33	8	4	53	1.50
38436540--38436592	26	2.0	27	85	3	72	33	0	0	66	0.92
38443419--38443499	35	2.3	36	81	8	96	23	22	27	27	1.99
38443739--38443777	15	2.5	15	87	4	60	23	17	5	53	1.63
38458067--38458181	19	5.8	19	87	8	167	37	8	18	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38458068--38458181	40	2.8	40	92	2	185	37	8	17	35	1.81
38458067--38458188	59	2.1	56	86	8	165	37	8	18	35	1.81
38459113--38459161	8	5.8	8	81	11	53	22	2	4	71	1.13
38459126--38459161	4	8.8	4	87	6	54	22	0	2	75	0.94
38461880--38462209	165	2.0	165	98	1	644	21	27	17	33	1.95
38476435--38476501	3	22.3	3	96	0	98	59	0	5	34	1.22
38480323--38480380	21	2.8	21	81	0	71	22	20	27	29	1.99
38503852--38504138	57	5.0	57	100	0	574	26	26	12	35	1.91
38508780--38508896	54	2.2	54	100	0	234	31	26	17	24	1.97
38510912--38510969	30	1.9	31	85	3	82	25	18	5	50	1.68
38512739--38512926	50	3.6	50	83	5	216	22	30	20	25	1.98
38512900--38513020	48	2.5	48	95	0	215	23	30	19	25	1.98
38513724--38513796	22	3.6	22	66	21	68	36	19	13	30	1.90
38513725--38513817	38	2.4	38	96	0	177	37	20	13	27	1.91
38516566--38516624	29	2.0	29	86	0	82	37	11	10	40	1.76
38535166--38535214	22	2.2	23	88	3	73	36	10	0	53	1.35
38535311--38535356	21	2.1	22	84	11	60	45	0	10	43	1.39
38535368--38535798	47	9.2	47	100	0	862	38	14	12	34	1.84
38536049--38536083	15	2.3	15	90	9	54	51	22	0	25	1.48
38538872--38538901	15	1.9	16	93	6	53	26	10	16	46	1.78
38540533--38540567	13	2.6	13	90	4	52	34	5	0	60	1.21
38543931--38543979	19	2.7	18	75	6	55	63	16	6	14	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38548005--38548043	18	2.2	17	86	13	53	33	0	20	46	1.51
38548269--38548412	23	6.3	23	84	1	182	22	21	25	30	1.99
38550156--38550188	18	1.9	17	88	11	50	48	6	21	24	1.72
38554024--38554062	16	2.4	16	84	12	53	43	15	10	30	1.80
38555611--38555771	85	1.9	84	85	1	223	34	14	12	39	1.83
38559940--38559975	2	18.5	2	94	5	65	50	0	0	50	1.00
38574886--38574939	22	2.5	22	81	0	63	16	27	18	37	1.93
38577384--38577473	46	2.0	46	82	8	112	35	21	18	24	1.96
38579364--38579409	22	2.1	22	88	8	67	69	2	2	26	1.11
38580038--38580202	82	2.0	83	98	1	323	41	6	4	47	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145