genome.fa.s2.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  80  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26651253--26651328	36	2.1	36	97	0	143	14	27	1	56	1.46
26651330--26651368	11	3.5	11	80	19	53	61	2	0	35	1.10
26651828--26651870	21	2.0	21	100	0	86	27	13	18	39	1.89
26658281--26658320	11	3.6	11	86	0	53	10	10	7	72	1.28
26661009--26661034	13	2.0	13	100	0	52	23	0	15	61	1.33
26663895--26663980	42	2.1	42	85	10	115	34	18	23	23	1.96
26663899--26663995	21	4.6	21	76	3	79	36	17	22	23	1.95
26665043--26665099	30	2.0	28	89	6	87	54	0	0	45	0.99
26665050--26665090	20	2.0	22	90	9	68	53	0	0	46	1.00
26665047--26665103	20	2.6	22	75	13	64	56	0	0	43	0.99
26665041--26665112	28	2.3	32	77	18	80	58	2	0	38	1.13
26672454--26672562	32	3.4	32	81	7	130	23	36	23	15	1.94
26672675--26672733	3	19.7	3	100	0	118	66	0	33	0	0.92
26673209--26673318	56	2.0	56	96	0	202	31	4	20	43	1.71
26674865--26674899	14	2.5	14	95	0	61	34	20	5	40	1.76
26675563--26675613	6	8.5	6	91	0	66	21	33	33	11	1.90
26675543--26675613	18	3.9	18	81	0	70	23	33	30	11	1.90
26676092--26676223	48	2.8	48	100	0	264	48	12	8	30	1.71
26676098--26676250	27	6.2	26	67	18	119	48	11	9	30	1.71
26676147--26676297	75	2.0	73	96	2	275	49	11	8	29	1.69
26684593--26684627	18	1.9	18	94	0	61	77	8	0	14	0.99
26686757--26687890	88	12.9	88	89	1	1675	27	23	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26688116--26688198	44	1.9	43	92	0	130	30	20	25	24	1.99
26687872--26688199	131	2.5	129	83	6	421	29	20	25	24	1.99
26688505--26688617	44	2.6	44	87	5	158	29	24	19	26	1.98
26690028--26690068	20	2.0	21	85	4	57	39	0	4	56	1.21
26690059--26690146	25	3.4	26	80	13	85	27	6	6	59	1.49
26690085--26690146	27	2.3	26	84	13	74	27	4	6	61	1.41
26694552--26694639	31	2.8	31	79	3	97	38	18	19	23	1.93
26695431--26695456	5	5.2	5	100	0	52	42	19	19	19	1.90
26708027--26708332	146	2.1	145	90	1	468	43	11	5	39	1.63
26708016--26708251	74	3.2	74	66	22	190	43	11	5	39	1.65
26710962--26711018	22	2.6	22	76	15	55	52	5	3	38	1.41
26710905--26711130	73	3.1	71	66	18	167	42	9	4	43	1.56
26712612--26712670	30	2.0	29	90	3	91	55	13	3	27	1.54
26712864--26712922	30	2.0	29	90	3	91	55	13	3	27	1.54
26712494--26712989	252	2.0	250	96	0	920	56	11	3	28	1.53
26717260--26717730	42	11.3	42	87	0	667	37	23	18	20	1.94
26717255--26717730	167	2.8	168	88	2	688	37	23	18	21	1.94
26717260--26717730	125	3.8	126	88	1	651	37	23	18	20	1.94
26718128--26718177	20	2.5	20	75	18	59	8	6	6	80	1.04
26722707--26722747	4	10.2	4	83	0	55	43	0	31	24	1.54
26725308--26725348	18	2.3	18	91	8	66	26	21	17	34	1.95
26726732--26726793	27	2.3	26	89	8	97	43	9	11	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26726739--26726793	27	2.0	27	96	0	101	43	10	9	36	1.72
26727679--26727996	146	2.2	144	87	3	460	41	10	6	41	1.64
26728219--26728244	3	8.7	3	100	0	52	0	0	30	69	0.89
26732965--26732995	11	2.8	11	100	0	62	29	19	0	51	1.47
26737285--26737327	23	2.0	21	86	9	59	0	32	0	67	0.91
26742513--26742651	52	2.7	52	97	1	262	35	20	29	13	1.91
26751563--26751611	18	2.7	17	78	12	53	32	2	0	65	1.04
26758057--26758096	16	2.5	16	91	0	62	47	2	7	42	1.45
26759025--26759074	9	5.6	9	95	0	91	10	34	20	36	1.86
26765424--26765461	18	2.1	18	85	9	51	36	5	0	57	1.21
26782751--26782800	26	1.9	26	91	0	82	32	12	10	46	1.74
26784371--26784414	20	2.2	20	95	0	79	34	11	11	43	1.77
26788395--26788427	14	2.2	16	89	10	52	0	0	21	78	0.75
26798052--26798084	14	2.3	15	89	5	50	45	6	3	45	1.43
26802952--26802991	19	2.1	19	90	0	62	30	0	7	62	1.23
26805248--26805353	6	19.3	6	70	18	70	37	14	30	17	1.90
26805263--26805300	15	2.6	15	91	4	60	42	13	26	18	1.87
26805296--26805363	21	3.2	21	78	0	64	35	11	32	20	1.89
26816312--26816346	17	1.9	19	88	11	56	45	2	17	34	1.63
26820937--26820978	2	21.0	2	100	0	84	50	0	0	50	1.00
26824044--26824081	2	19.0	2	88	0	58	55	44	0	0	0.99
26825351--26825579	111	2.1	109	95	1	413	22	13	15	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26835389--26835528	56	2.5	56	76	11	151	45	8	10	36	1.69
26835621--26836745	29	39.1	29	96	0	1978	25	0	26	48	1.51
26842080--26842112	15	2.1	16	88	5	50	63	0	12	24	1.28
26848218--26848292	36	2.1	36	97	0	141	42	8	17	32	1.78
26854294--26854486	107	1.8	107	81	0	242	26	15	25	32	1.95
26860645--26860677	17	1.9	17	100	0	66	51	0	12	36	1.39
26870252--26870278	3	9.0	3	100	0	54	33	0	0	66	0.92
26871281--26871356	28	2.7	28	93	0	125	40	22	1	35	1.62
26871524--26871587	29	2.2	29	82	2	74	35	7	15	40	1.76
26874418--26874484	34	1.9	35	90	3	109	46	10	8	34	1.70
26875310--26875389	24	3.4	23	77	5	79	27	18	25	28	1.98
26875856--26876363	254	2.0	254	88	1	759	40	15	19	24	1.90
26876668--26876712	23	2.0	23	90	0	72	40	17	8	33	1.81
26876669--26876718	23	2.2	23	85	0	64	42	18	10	30	1.82
26879703--26879727	13	1.9	13	100	0	50	80	4	0	16	0.87
26886088--26886122	18	2.0	17	88	5	52	45	0	0	54	0.99
26886072--26887951	156	12.1	156	99	0	3733	46	6	3	43	1.45
26886244--26886278	18	2.0	17	88	5	52	45	0	0	54	0.99
26886400--26886434	18	2.0	17	88	5	52	45	0	0	54	0.99
26886556--26886590	18	2.0	17	88	5	52	45	0	0	54	0.99
26886712--26886746	18	2.0	17	88	5	52	45	0	0	54	0.99
26886868--26886902	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26887024--26887058	18	2.0	17	88	5	52	45	0	0	54	0.99
26887180--26887214	18	2.0	17	88	5	52	45	0	0	54	0.99
26887336--26887370	18	2.0	17	88	5	52	45	0	0	54	0.99
26887492--26887526	18	2.0	17	88	5	52	45	0	0	54	0.99
26887648--26887682	18	2.0	17	88	5	52	45	0	0	54	0.99
26887804--26887852	15	2.9	18	80	20	61	44	0	0	55	0.99
26887804--26887858	15	3.4	16	80	16	53	43	0	1	54	1.10
26888074--26888125	16	3.2	16	94	0	95	38	34	0	26	1.57
26888729--26888767	18	2.2	18	86	9	53	35	2	0	61	1.10
26900052--26900196	23	6.3	23	83	4	186	31	27	19	22	1.98
26900052--26900195	46	3.1	46	89	0	216	31	27	19	21	1.97
26910553--26910634	42	2.0	42	95	0	146	45	14	10	29	1.79
26910555--26910645	42	2.2	42	87	0	128	50	13	7	28	1.68
26911733--26911783	24	2.1	24	92	7	86	33	25	21	19	1.97
26913803--26913848	19	2.5	19	89	3	67	41	10	6	41	1.66
26917332--26917364	13	2.6	13	85	4	50	72	0	3	24	0.98
26918510--26918540	15	2.1	15	93	0	53	80	0	9	9	0.90
26919377--26919409	10	3.4	10	87	4	50	63	9	6	21	1.45
26926902--26927121	93	2.4	93	95	0	395	41	12	10	35	1.78
26942390--26942620	115	2.0	115	100	0	462	30	14	13	41	1.85
26947879--26948088	107	2.0	107	89	1	323	39	20	16	23	1.92
26952444--26952520	39	2.0	38	89	2	118	35	1	6	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26952964--26953041	7	10.9	7	70	15	52	42	38	1	17	1.58
26953030--26953081	15	3.6	14	80	10	52	53	26	0	19	1.45
26953030--26953081	7	7.3	7	80	10	52	53	26	0	19	1.45
26953207--26953402	41	4.8	41	90	1	288	28	29	20	20	1.98
26953509--26953626	40	3.0	40	89	0	182	20	19	24	35	1.96
26958398--26958490	29	3.3	28	79	8	100	55	1	8	34	1.37
26960307--26960556	44	5.8	44	68	9	120	29	20	20	30	1.98
26960521--26960653	45	3.0	45	73	2	142	25	26	20	27	1.99
26960480--26960653	89	2.0	89	90	0	276	26	25	21	27	1.99
26960491--26960641	44	3.4	44	77	1	176	25	23	21	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145