genome.fa.s2.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  11  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3740084--3740131	19	2.5	20	80	10	64	37	0	6	56	1.25
3749763--3749787	12	2.1	12	100	0	50	32	0	0	68	0.90
3754585--3754636	17	3.1	17	97	0	95	13	0	11	75	1.06
3754585--3754636	11	4.6	11	76	4	50	13	0	11	75	1.06
3755720--3755770	21	2.5	21	83	3	68	27	0	3	68	1.07
3758847--3758908	31	2.0	31	96	0	115	17	9	17	54	1.69
3758850--3758900	15	3.3	15	70	24	52	17	7	17	56	1.63
3758851--3758901	16	3.2	16	68	15	52	17	7	15	58	1.60
3763140--3763180	22	2.0	20	85	9	55	31	12	7	48	1.68
3764281--3764332	18	2.8	19	82	8	54	48	0	1	50	1.12
3764837--3764881	16	2.8	17	77	16	51	35	4	8	51	1.54
3769596--3770050	113	4.1	113	82	4	499	30	18	22	27	1.98
3769596--3770037	222	2.0	223	84	0	571	30	18	22	28	1.97
3770007--3770093	39	2.3	39	82	9	99	33	20	25	20	1.97
3770062--3770200	75	1.9	75	84	3	190	32	20	19	28	1.97
3770470--3770522	22	2.5	21	93	6	90	9	0	41	49	1.35
3772206--3772408	89	2.3	88	91	5	336	20	13	22	43	1.87
3772606--3772662	21	2.8	20	81	7	69	38	19	36	5	1.74
3772630--3772694	33	2.0	33	93	0	112	40	18	36	4	1.71
3773085--3773292	43	4.9	43	79	5	154	27	20	23	29	1.99
3773172--3773296	43	3.0	42	85	2	169	25	20	21	32	1.97
3775239--3775274	12	3.0	12	83	0	54	52	0	11	36	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3775539--3776187	322	2.0	323	99	0	1291	37	6	20	34	1.79
3776712--3776747	18	1.9	19	88	5	56	52	0	22	25	1.47
3776712--3776759	19	2.6	19	83	9	55	54	0	20	25	1.45
3778168--3778261	49	1.9	49	95	4	172	45	7	23	23	1.78
3780347--3780384	7	5.6	7	84	6	51	28	0	2	68	1.03
3781456--3781483	5	5.6	5	100	0	56	78	0	0	21	0.75
3784088--3784130	22	2.0	22	86	9	61	60	11	9	18	1.57
3784953--3785491	269	2.0	270	99	0	1071	41	10	9	39	1.71
3792077--3792120	18	2.4	18	88	0	61	13	13	20	52	1.74
3796826--3796905	39	2.1	39	97	0	151	22	16	12	48	1.79
3798595--3798638	16	2.7	16	80	13	54	45	15	0	38	1.47
3801069--3802423	677	2.0	677	100	0	2710	35	15	8	39	1.79
3803645--3803779	40	3.4	39	81	6	148	37	20	21	20	1.95
3803815--3804140	41	8.0	41	91	1	510	20	25	27	26	1.99
3804505--3804541	14	2.6	14	91	0	65	24	0	29	45	1.53
3804751--3804796	20	2.3	20	85	11	67	17	0	45	36	1.49
3804839--3804897	7	8.4	7	86	0	64	23	0	44	32	1.54
3804839--3804905	21	3.2	21	79	8	66	25	0	43	31	1.55
3804839--3804897	14	4.2	14	86	4	75	23	0	44	32	1.54
3804859--3804905	14	3.4	14	80	11	51	27	0	42	29	1.56
3810622--3810681	18	3.4	18	64	13	52	43	6	10	40	1.64
3810882--3811172	43	6.8	43	95	0	503	19	19	33	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3812446--3812495	25	2.0	25	88	0	73	54	8	0	38	1.30
3812432--3812490	12	5.2	12	71	17	54	62	3	0	33	1.12
3814528--3814677	43	3.5	43	80	8	162	24	16	27	31	1.97
3817595--3817619	7	3.6	7	100	0	50	56	0	16	28	1.41
3821339--3821483	71	2.0	71	97	2	274	28	13	15	42	1.85
3821516--3821570	3	18.3	3	96	0	101	65	0	34	0	0.93
3827311--3827527	121	1.8	120	90	3	355	32	23	15	29	1.95
3835299--3835393	37	2.6	37	88	1	147	38	31	12	16	1.86
3842636--3842702	34	1.9	35	88	8	102	44	11	8	34	1.73
3851565--3851591	5	5.4	5	100	0	54	81	0	0	18	0.69
3859104--3859280	88	2.0	88	100	0	354	35	6	12	45	1.69
3859657--3859692	17	2.1	18	94	5	65	19	5	0	75	1.00
3859660--3859699	17	2.4	17	86	0	62	17	10	0	72	1.11
3859846--3859876	9	3.4	9	100	0	62	19	0	45	35	1.51
3870864--3870926	31	2.0	31	90	0	99	36	15	15	31	1.90
3871358--3871420	31	2.0	31	90	0	99	36	15	15	31	1.90
3870462--3871453	494	2.0	495	99	0	1968	42	15	9	32	1.79
3871468--3871493	6	4.3	6	100	0	52	53	0	0	46	1.00
3872518--3872558	20	2.0	21	85	9	57	73	2	2	21	1.07
3873865--3874241	43	8.8	43	73	6	183	25	28	20	24	1.99
3874031--3874242	43	4.9	43	81	5	196	28	30	16	24	1.96
3874032--3874242	87	2.4	87	81	2	237	28	30	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3874075--3874262	87	2.2	87	80	1	198	31	30	15	21	1.95
3884360--3884411	27	1.9	27	88	0	77	50	9	0	40	1.35
3884481--3884517	10	3.7	10	92	0	65	43	13	0	43	1.44
3886190--3886222	16	2.1	16	94	5	59	39	30	0	30	1.57
3887094--3887779	114	6.0	114	89	2	1011	27	22	19	29	1.98
3887094--3887779	230	3.0	228	90	1	1088	27	22	19	29	1.98
3889250--3889287	11	3.5	11	85	7	51	21	2	0	76	0.91
3893529--3893586	28	2.1	28	86	0	80	39	13	13	32	1.85
3897322--3897369	24	2.0	24	84	8	62	22	16	12	47	1.80
3899522--3899552	13	2.4	13	94	0	53	51	3	0	45	1.17
3907537--3907582	23	2.0	23	100	0	92	26	4	17	52	1.63
3913337--3913367	14	2.2	14	100	0	62	22	25	12	38	1.90
3914901--3914977	13	5.9	13	89	0	118	38	25	7	27	1.83
3916348--3916372	2	12.5	2	100	0	50	48	0	0	52	1.00
3916951--3916989	19	2.1	19	85	9	53	25	5	20	48	1.70
3916951--3916988	18	2.1	19	85	5	51	26	5	21	47	1.71
3938239--3938269	6	5.2	6	92	0	53	19	16	12	51	1.76
3943725--3943773	13	4.0	12	84	10	64	71	2	26	0	0.97
3943732--3943773	11	3.5	11	87	12	57	69	2	28	0	1.01
3951906--3951983	25	3.1	25	76	12	79	34	20	19	25	1.96
3953727--3953771	16	2.8	16	83	10	56	37	8	11	42	1.72
3958451--3958488	19	2.0	19	100	0	76	31	10	10	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3962890--3962955	19	3.4	19	72	12	53	56	1	3	39	1.24
3963261--3963396	9	14.4	9	69	15	71	30	2	0	65	1.13
3963223--3963385	57	2.9	57	78	9	158	31	3	0	64	1.13
3963261--3963311	19	2.7	19	79	8	59	31	1	1	64	1.15
3963223--3963378	10	16.3	10	68	15	62	32	3	0	63	1.15
3963223--3963397	29	6.1	29	70	14	114	30	3	0	65	1.14
3963697--3963749	18	2.9	18	80	2	61	41	45	1	11	1.51
3963853--3963901	9	5.4	9	95	0	89	24	10	22	42	1.84
3964034--3964275	29	8.3	29	99	0	475	17	10	27	44	1.81
3964310--3964525	98	2.3	96	85	4	276	42	10	18	28	1.83
3966841--3966965	29	4.3	28	77	6	106	32	20	4	42	1.73
3966840--3966968	58	2.2	59	84	2	161	32	19	4	43	1.71
3966928--3966985	30	1.9	30	85	0	80	37	22	5	34	1.76
3967336--3967369	3	11.0	3	87	6	50	64	0	35	0	0.94
3967333--3967368	12	3.2	12	92	7	58	61	0	38	0	0.96
3967337--3967397	10	6.2	10	81	14	58	73	0	26	0	0.83
3967349--3967397	14	3.6	15	84	13	54	77	0	22	0	0.77
3967355--3967400	7	6.3	7	82	9	56	80	0	19	0	0.71
3967709--3967777	5	13.8	5	75	17	63	81	0	18	0	0.70
3967706--3967797	11	7.6	11	82	13	85	80	0	19	0	0.71
3967712--3967796	34	2.4	34	83	14	95	80	0	20	0	0.72
3967706--3967796	16	5.4	16	75	19	71	80	0	19	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3970349--3970459	41	2.7	40	81	4	134	17	23	21	37	1.93
3972653--3972697	23	2.0	23	86	8	65	60	6	4	28	1.42
3972829--3972854	5	5.2	5	100	0	52	19	0	0	80	0.71
3973482--3973701	106	2.0	109	90	7	347	33	5	18	42	1.73
3975257--3975281	1	25.0	1	100	0	50	0	0	0	100	0.00
3984996--3985042	24	2.0	24	83	8	60	48	17	0	34	1.47
3987176--3987215	21	1.9	21	90	10	64	35	30	15	20	1.93
3993007--3993040	18	1.9	17	94	5	59	55	2	0	41	1.15
4001734--4001795	32	1.9	33	83	3	81	40	20	12	25	1.89
4005622--4005650	6	4.8	6	100	0	58	65	17	0	17	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145