genome.fa.s2.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  9  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3114400--3114555	84	1.9	84	87	2	233	28	15	21	34	1.94
3114401--3114574	84	2.1	84	82	4	208	27	16	21	34	1.95
3114809--3115057	84	3.0	84	81	8	235	31	15	20	32	1.94
3114814--3115090	83	3.3	82	80	7	258	30	15	21	32	1.94
3114863--3115090	84	2.7	82	81	4	260	29	16	21	32	1.95
3116073--3116137	32	2.0	32	96	0	121	43	21	4	30	1.73
3116461--3116500	5	7.6	5	83	10	53	22	0	2	75	0.93
3117839--3117865	2	13.5	2	100	0	54	48	0	0	51	1.00
3123994--3124122	43	3.0	43	89	1	195	17	14	7	59	1.58
3123996--3124126	44	3.0	44	89	1	201	17	14	7	60	1.57
3125304--3125352	18	2.7	18	81	6	64	73	4	4	18	1.15
3148799--3148823	6	4.2	6	100	0	50	64	0	20	16	1.30
3150147--3150224	42	1.9	40	82	7	95	21	30	28	19	1.97
3154047--3154429	191	2.0	191	98	0	748	29	24	22	23	1.99
3155466--3155531	23	2.8	23	76	4	60	33	22	25	18	1.97
3155449--3155583	25	5.4	26	75	12	104	36	22	23	17	1.95
3155524--3155598	26	2.9	27	80	11	86	37	24	21	17	1.94
3157900--3157927	14	2.0	14	100	0	56	35	0	21	42	1.53
3157902--3157935	14	2.4	14	90	0	50	41	2	17	38	1.65
3160600--3160647	12	4.2	12	78	10	64	29	33	0	37	1.58
3160612--3160653	22	1.9	22	100	0	84	28	33	0	38	1.58
3162300--3162334	18	1.9	18	88	0	52	25	34	8	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3162738--3162848	25	4.6	25	67	17	81	38	2	12	45	1.56
3162731--3162792	25	2.3	27	78	16	74	40	3	11	45	1.56
3162736--3162916	71	2.5	71	90	2	292	37	2	13	46	1.57
3162796--3162919	36	3.5	35	64	11	90	37	1	12	47	1.52
3162919--3162971	23	2.7	18	75	25	61	52	18	0	28	1.46
3162928--3162972	23	2.0	23	100	0	90	51	17	0	31	1.46
3162941--3163256	29	10.8	29	87	6	467	43	26	1	27	1.65
3162941--3163256	59	5.4	58	86	6	467	43	26	1	27	1.65
3162945--3163256	88	3.5	88	99	0	615	43	26	1	27	1.65
3167098--3167168	35	2.1	35	87	10	103	71	11	1	15	1.20
3172179--3172211	8	4.0	8	96	4	57	27	12	0	60	1.32
3172906--3172949	18	2.4	18	76	3	52	70	4	0	25	1.06
3175119--3175217	41	2.4	41	82	0	135	23	20	29	27	1.99
3179126--3179305	89	2.0	88	93	2	288	31	12	12	43	1.79
3181163--3181193	7	4.3	7	95	4	53	25	0	0	74	0.82
3187362--3187416	28	2.0	28	92	0	92	27	25	14	32	1.95
3197878--3197936	28	2.1	28	87	0	82	32	20	16	30	1.95
3199649--3199697	18	2.8	18	81	3	55	61	0	2	36	1.08
3201633--3201732	51	2.0	51	84	4	130	48	1	26	25	1.58
3201691--3201744	11	4.8	12	84	15	71	44	0	31	24	1.54
3202000--3202059	30	2.0	30	96	0	111	36	21	8	33	1.84
3205653--3205708	28	2.0	28	100	0	112	14	25	17	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3210231--3210274	23	1.9	23	86	9	63	31	0	0	68	0.90
3210230--3210275	14	3.2	14	82	17	67	30	0	0	69	0.89
3210645--3210691	14	3.5	13	82	8	58	61	0	4	34	1.15
3212383--3212449	21	3.4	20	72	16	68	68	4	4	22	1.26
3213591--3213639	24	2.0	24	92	0	80	30	8	24	36	1.85
3219839--3219926	43	2.0	43	93	0	149	51	14	14	19	1.77
3221160--3221192	15	2.2	15	94	0	57	42	12	3	42	1.57
3221960--3222022	30	2.1	30	87	0	90	25	3	14	57	1.52
3222141--3222361	109	2.0	110	99	0	435	35	15	19	29	1.93
3224915--3225099	46	4.0	46	91	1	300	35	9	26	28	1.87
3229522--3229616	47	2.0	47	97	0	181	34	14	26	24	1.94
3234461--3234515	21	2.4	23	85	8	69	58	10	1	29	1.43
3234819--3234870	8	6.6	8	78	12	63	57	0	5	36	1.23
3234890--3234923	16	2.1	16	94	0	59	50	5	8	35	1.58
3234902--3234945	22	2.0	23	81	4	54	61	2	2	34	1.21
3235982--3236008	4	6.8	4	100	0	54	77	0	0	22	0.76
3236851--3237172	50	6.4	50	69	0	221	26	20	20	32	1.97
3236851--3237172	100	3.2	100	92	0	500	26	20	20	32	1.97
3237048--3237188	50	2.8	50	70	4	122	29	20	19	31	1.97
3236851--3237220	100	3.7	100	88	0	481	26	20	20	32	1.97
3236895--3237258	100	3.6	100	86	0	307	25	21	20	32	1.97
3237308--3237570	75	3.5	75	99	0	517	19	23	23	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3237724--3237855	45	3.0	45	79	8	153	23	22	25	28	1.99
3237848--3238074	44	5.2	44	64	16	121	24	25	24	25	2.00
3237731--3238859	86	13.1	86	84	6	1145	24	23	22	29	1.99
3237731--3238859	257	4.4	257	87	4	1418	24	23	22	29	1.99
3237731--3238859	171	6.5	171	83	6	1164	24	23	22	29	1.99
3240030--3240079	14	3.5	14	83	2	64	14	14	0	72	1.14
3240078--3240105	3	9.3	3	100	0	56	0	32	0	67	0.91
3242719--3243023	153	2.0	153	98	0	592	23	27	14	34	1.94
3244761--3245166	203	2.0	203	99	0	794	32	16	20	29	1.95
3245507--3245561	21	2.4	23	85	8	69	58	10	1	29	1.43
3246846--3246872	4	6.8	4	100	0	54	77	0	0	22	0.76
3250220--3250260	13	3.2	13	80	19	59	53	4	0	41	1.22
3261794--3261847	25	2.2	24	75	15	58	44	5	42	7	1.55
3263312--3263337	3	8.7	3	100	0	52	34	30	34	0	1.58
3265822--3265863	23	1.9	22	85	9	59	38	7	4	50	1.51
3267195--3267248	19	2.8	20	72	16	58	57	7	0	35	1.27
3274780--3274819	11	3.6	11	79	0	53	20	15	7	57	1.61
3274860--3274919	30	2.0	30	96	0	111	25	3	15	56	1.54
3276060--3276165	55	1.9	55	84	3	142	39	15	18	26	1.90
3280062--3280108	23	2.0	23	91	0	76	19	19	14	46	1.84
3286018--3286092	3	25.0	3	100	0	150	66	0	33	0	0.92
3289766--3290020	135	1.9	135	82	0	321	37	20	14	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3293226--3293256	6	5.2	6	100	0	62	16	0	51	32	1.44
3293766--3293817	20	2.7	19	81	3	59	61	17	13	7	1.54
3300576--3300617	20	2.0	21	86	4	59	64	0	4	30	1.14
3302255--3302306	6	8.7	6	91	0	77	51	34	11	1	1.49
3302251--3302306	18	3.1	18	89	0	85	53	33	10	1	1.46
3304326--3304405	30	2.5	30	80	11	72	42	2	6	48	1.41
3307505--3307529	5	5.0	5	100	0	50	40	0	0	60	0.97
3325889--3326006	43	2.8	42	72	18	109	22	23	26	27	1.99
3326434--3326512	39	2.0	40	87	5	115	51	10	0	37	1.36
3331039--3331078	19	2.0	20	85	4	55	25	20	7	47	1.75
3332821--3332860	19	2.1	19	86	9	55	15	17	5	62	1.49
3333801--3333846	7	6.6	7	81	18	60	67	0	17	15	1.24
3335073--3335265	45	4.3	45	76	7	189	29	17	25	27	1.97
3335073--3335265	89	2.2	89	89	1	289	29	17	25	27	1.97
3335353--3335844	44	11.2	44	67	7	275	29	20	23	27	1.99
3335352--3335887	264	2.0	264	89	1	824	29	20	23	26	1.99
3335257--3335826	132	4.3	132	93	1	921	29	18	24	27	1.98
3335352--3335930	132	4.4	132	89	1	464	29	20	23	26	1.99
3338628--3338664	17	2.2	17	100	0	74	48	0	16	35	1.46
3341702--3341729	11	2.5	11	100	0	56	25	0	0	75	0.81
3341906--3341953	20	2.3	20	79	10	53	41	2	2	54	1.24
3360507--3360550	21	2.0	21	82	8	52	50	4	2	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3363695--3363911	101	2.2	100	87	3	301	30	23	11	33	1.91
3363688--3363877	33	5.7	33	69	13	104	30	24	11	33	1.91
3366554--3366635	35	2.3	36	83	8	96	46	1	4	47	1.31
3366547--3366643	24	4.1	23	72	23	62	47	1	4	47	1.28
3368310--3368410	45	2.2	45	85	0	130	21	17	20	39	1.92
3368579--3368603	2	12.5	2	100	0	50	52	0	0	48	1.00
3370416--3370527	55	2.0	55	100	0	224	29	14	16	40	1.87
3370990--3371098	17	6.5	17	69	3	69	22	8	24	44	1.80
3371050--3371145	33	2.8	32	76	6	84	22	12	23	40	1.88
3377402--3377500	50	2.0	50	91	0	162	39	8	20	32	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145