Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  145  of  145  ( 17348 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48293219--48293394
62
2.8
62
80
8
173
39
14
5
40
1.69
48293250--48293392
31
4.6
31
74
11
109
39
14
4
40
1.68
48293217--48293375
31
5.1
31
74
7
135
39
14
4
41
1.66
48298487--48299107
322
1.9
324
83
4
813
26
15
28
29
1.96
48299094--48299121
14
2.0
14
100
0
56
21
0
35
42
1.53
48308536--48308560
2
12.5
2
100
0
50
48
0
0
52
1.00
48313360--48313592
69
3.3
69
80
11
265
33
16
17
33
1.92
48320540--48320586
16
2.9
16
75
9
51
63
0
0
36
0.94
48320523--48320608
27
3.1
27
75
11
66
62
2
0
34
1.08
48322009--48322038
2
15.0
2
92
0
51
53
46
0
0
1.00
48325907--48325938
3
10.7
3
100
0
64
68
0
0
31
0.90
48325960--48325986
3
9.0
3
100
0
54
66
0
33
0
0.92
48329493--48329534
20
2.0
21
86
9
59
52
14
14
19
1.75
48330798--48330823
11
2.4
11
100
0
52
23
0
15
61
1.33
48333231--48333270
20
2.0
20
90
0
62
50
12
10
27
1.72
48333219--48333285
34
1.9
35
87
3
100
46
11
8
32
1.72
48333254--48333293
14
2.9
14
84
0
53
42
17
7
32
1.77
48334121--48334146
3
8.7
3
100
0
52
65
0
0
34
0.93
48342456--48342517
19
3.3
19
76
13
65
72
1
0
25
0.94
48344176--48344236
30
2.1
30
81
9
72
31
6
13
49
1.67
48355866--48355891
11
2.4
11
100
0
52
38
7
0
53
1.30
48355906--48355943
16
2.3
17
81
4
51
42
0
0
57
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48359894--48360197
158
1.9
155
86
4
423
52
15
8
23
1.69
48360960--48361684
363
2.0
362
99
0
1441
35
12
13
37
1.84
48363020--48363044
10
2.5
10
100
0
50
0
0
8
92
0.40
48363078--48363529
225
2.0
226
99
0
888
31
15
19
33
1.93
48366056--48366112
7
8.0
7
74
18
55
21
1
0
77
0.86
48366056--48366113
13
4.2
13
79
16
71
22
1
0
75
0.89
48366060--48366118
30
2.0
30
100
0
118
27
1
0
71
0.96
48367545--48367582
20
1.9
20
89
10
60
55
15
10
18
1.68
48368650--48368679
13
2.3
13
100
0
60
50
23
0
26
1.50
48371059--48371356
97
3.1
96
80
6
334
46
18
17
17
1.84
48382078--48382236
61
2.6
61
84
4
207
49
7
20
22
1.73
48393142--48393566
104
4.1
104
91
1
647
40
16
11
31
1.83
48394817--48394886
32
2.2
31
87
2
95
48
14
10
27
1.75
48395923--48395949
2
13.5
2
100
0
54
51
0
0
48
1.00
48398512--48398573
29
2.1
29
100
0
124
27
6
16
50
1.69
48398524--48398585
29
2.1
29
81
0
70
37
8
11
43
1.70
48398584--48398624
20
2.0
20
90
0
64
34
0
2
63
1.08
48403643--48403671
2
14.5
2
100
0
58
48
0
0
51
1.00
48405505--48405558
27
2.0
26
82
10
63
42
3
0
53
1.18
48405987--48406024
20
2.0
20
89
5
60
18
5
2
73
1.14
48406032--48406072
16
2.7
16
92
7
68
41
2
0
56
1.13
48411809--48411859
24
2.1
24
82
7
59
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48415972--48416019
23
2.1
23
88
3
71
22
6
8
62
1.46
48416745--48416818
31
2.4
31
84
6
89
32
12
13
41
1.81
48426678--48426716
20
2.0
20
85
5
53
33
0
7
58
1.26
48432065--48432103
20
1.9
20
89
5
60
43
0
0
56
0.99
48446408--48446566
79
2.0
79
97
0
300
25
18
24
30
1.98
48455340--48455371
6
5.3
6
100
0
64
84
0
15
0
0.63
48466347--48466404
29
2.0
29
96
0
107
39
17
13
29
1.88
48466586--48466645
31
1.9
31
89
0
93
36
11
8
43
1.71
48467934--48467983
25
2.0
26
84
4
66
64
4
2
30
1.23
48467987--48468028
18
2.3
19
87
8
68
42
7
4
45
1.52
48469461--48469508
24
2.0
24
91
0
78
52
8
25
14
1.69
48505454--48505493
14
3.1
14
75
17
50
32
0
5
62
1.17
48506206--48506231
5
5.2
5
100
0
52
0
19
19
61
1.35
48513300--48513491
96
2.0
96
91
0
312
27
13
16
43
1.84
48519976--48520021
9
4.8
9
85
15
65
32
0
2
65
1.05
48519975--48520020
10
4.6
10
80
20
51
32
0
2
65
1.05
48529169--48529222
26
2.1
26
100
0
108
42
3
22
31
1.71
48544672--48544992
159
2.0
161
95
2
585
43
9
12
34
1.75
48577855--48577899
22
2.0
23
82
4
56
66
4
26
2
1.22
48578144--48578193
26
1.9
26
95
0
91
40
16
24
20
1.91
48580058--48580160
35
2.9
35
88
0
134
19
30
27
23
1.98
48583854--48583908
15
3.0
19
75
25
64
50
5
27
16
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48585174--48585257
40
2.1
40
95
0
150
11
11
36
39
1.79
48586317--48586357
21
2.0
21
85
9
57
12
14
21
51
1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145

The End!