genome.fa.s2.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  78  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25910455--25911412	477	2.0	477	95	0	1736	30	21	15	32	1.95
25918220--25918509	144	2.0	145	97	1	546	40	12	9	36	1.76
25919307--25919545	120	2.0	120	99	0	469	31	17	9	41	1.81
25926162--25926340	68	2.6	68	90	1	261	24	21	19	34	1.96
25926384--25926474	35	2.7	34	81	3	103	30	29	15	24	1.95
25937112--25937142	14	2.2	14	100	0	62	12	19	22	45	1.84
25938883--25938920	20	1.9	20	88	0	58	63	0	2	34	1.09
25940178--25940313	68	2.0	69	82	1	166	39	5	5	49	1.49
25944199--25944308	51	2.2	51	88	0	166	21	18	17	42	1.89
25945374--25945453	39	2.1	39	97	2	153	42	16	8	32	1.79
25956141--25956175	16	2.1	17	89	5	54	37	0	51	11	1.38
25956164--25956193	14	2.1	14	100	0	60	30	0	43	26	1.55
25956632--25956665	13	2.5	14	85	4	52	58	0	8	32	1.29
25978489--25978540	24	2.2	24	89	0	77	50	9	3	36	1.54
25982898--25982949	24	2.2	24	89	0	77	50	9	3	36	1.54
25990532--25990588	28	2.0	28	100	0	114	47	17	10	24	1.79
25990894--25990977	42	2.0	42	86	2	116	23	27	2	46	1.65
25992480--25992524	20	2.3	19	81	11	54	48	4	20	26	1.68
25995206--25995244	18	2.2	19	86	9	55	20	0	10	69	1.17
26004303--26004342	21	1.9	21	85	10	55	15	10	27	47	1.77
26005683--26005716	17	2.1	16	88	5	50	76	14	0	8	1.01
26010220--26010589	205	1.8	205	83	5	498	30	23	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26010953--26010993	13	3.1	14	86	6	50	21	7	24	46	1.77
26011052--26011103	25	2.0	26	85	10	72	25	1	23	50	1.60
26011168--26011244	7	11.0	7	75	0	64	18	0	36	45	1.49
26012159--26012219	16	3.8	16	80	8	70	63	3	6	26	1.34
26012455--26012516	24	2.6	24	80	7	65	29	41	3	25	1.71
26017738--26017827	21	4.3	21	88	0	126	33	22	43	1	1.61
26018268--26018349	43	1.9	43	90	5	130	35	19	17	28	1.94
26018321--26018501	43	4.2	42	80	9	172	23	23	20	32	1.98
26020102--26020134	14	2.3	15	94	5	59	69	0	0	30	0.88
26020101--26020142	14	3.0	13	86	13	57	64	0	0	35	0.94
26021672--26021706	15	2.3	15	100	0	70	34	5	5	54	1.48
26024648--26024693	2	23.5	2	95	4	85	0	47	0	52	1.00
26026316--26026340	13	1.9	13	100	0	50	24	0	0	76	0.80
26031588--26031632	16	2.8	15	78	15	54	73	0	2	24	0.95
26031588--26031634	17	2.8	17	87	6	60	72	0	4	23	1.02
26032455--26032499	15	2.9	16	80	9	58	53	4	15	26	1.61
26037485--26037524	18	2.3	18	86	4	55	17	35	2	45	1.62
26043473--26043502	14	2.1	15	93	6	53	46	13	6	33	1.69
26044736--26044774	14	2.5	16	88	12	55	35	2	0	61	1.10
26045180--26045251	18	3.9	18	74	15	58	37	1	0	61	1.05
26045180--26045252	37	2.0	37	81	10	87	38	1	0	60	1.06
26047794--26048389	296	2.0	295	92	0	985	34	15	24	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26049792--26049993	101	2.0	101	95	0	359	28	25	18	28	1.98
26061776--26061801	13	2.0	13	100	0	52	30	15	30	23	1.95
26066145--26066181	19	1.9	19	89	10	58	51	8	0	40	1.32
26067643--26067724	18	4.4	18	68	22	62	45	8	4	41	1.56
26082342--26082372	2	15.5	2	93	0	53	45	3	0	51	1.17
26085938--26085971	16	2.1	16	88	0	50	20	14	20	44	1.87
26086312--26086345	16	2.1	16	88	0	50	20	14	20	44	1.87
26085831--26086578	374	2.0	374	100	0	1496	27	14	23	33	1.94
26096993--26097023	14	2.2	14	94	0	53	61	6	6	25	1.45
26097390--26097451	28	2.3	27	83	5	72	33	6	1	58	1.34
26111504--26111559	28	2.0	28	100	0	112	50	14	10	25	1.75
26112276--26112335	3	20.0	3	100	0	120	0	33	0	66	0.92
26113648--26113763	61	2.0	60	84	5	155	48	5	3	43	1.42
26115457--26115484	14	2.0	14	100	0	56	21	14	7	57	1.61
26117282--26117331	8	5.3	9	78	21	50	48	0	8	44	1.32
26120514--26120554	18	2.2	18	86	8	55	39	9	9	41	1.71
26130606--26130640	16	2.2	16	94	0	61	42	5	11	40	1.65
26131874--26131926	21	2.4	22	84	12	65	35	3	9	50	1.53
26139011--26139079	25	2.8	25	84	0	93	30	21	18	28	1.97
26140287--26140322	12	3.0	12	83	0	54	25	33	25	16	1.96
26141399--26141459	30	2.0	30	90	0	95	32	16	4	45	1.68
26141948--26142058	36	3.1	36	80	1	125	38	33	11	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26141991--26142107	35	3.3	35	82	1	144	41	29	14	15	1.87
26147183--26147228	20	2.1	21	80	15	58	76	4	8	10	1.15
26149864--26149988	62	2.0	63	96	1	234	44	12	20	22	1.85
26150174--26150212	6	6.5	6	90	0	51	0	48	0	51	1.00
26150156--26150218	24	2.5	24	82	7	72	3	46	1	49	1.27
26156469--26156512	18	2.5	17	82	7	52	61	0	0	38	0.96
26159577--26159639	18	3.5	18	70	8	65	50	1	38	9	1.44
26160109--26160157	25	2.0	25	100	0	98	32	12	16	38	1.86
26161845--26161916	33	2.2	33	79	0	81	47	2	26	23	1.65
26163876--26163908	6	5.3	6	96	3	57	45	0	51	3	1.16
26164108--26164163	13	4.5	13	82	13	82	48	14	0	37	1.44
26166047--26166084	19	2.2	17	86	13	51	50	5	21	23	1.69
26167375--26167411	9	4.1	9	92	0	65	29	10	13	45	1.77
26172555--26172592	3	12.7	3	88	0	58	63	2	34	0	1.09
26172889--26172934	23	2.0	24	87	12	69	47	2	4	45	1.34
26172991--26173020	15	1.9	16	93	6	53	40	6	6	46	1.56
26173511--26173624	10	11.4	10	69	16	51	57	2	1	37	1.23
26173660--26173828	86	1.9	89	88	7	256	38	23	8	29	1.85
26178098--26178147	21	2.4	21	93	0	82	22	18	30	30	1.97
26178113--26178186	21	3.5	21	83	7	78	24	21	24	29	1.99
26186336--26186452	41	2.9	41	92	2	164	31	27	17	23	1.97
26192186--26192354	25	6.8	25	73	12	132	17	27	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26192186--26192309	50	2.5	50	92	4	196	18	27	15	38	1.91
26194796--26194838	20	2.2	20	86	0	59	39	6	11	41	1.68
26201396--26201542	72	2.0	73	98	1	287	28	2	13	55	1.52
26202640--26202671	13	2.5	13	94	0	55	28	18	18	34	1.95
26203887--26203966	31	2.6	31	84	5	92	33	8	15	42	1.77
26203912--26203975	30	2.2	29	82	2	74	34	10	12	42	1.78
26204112--26204197	31	2.9	30	78	3	93	34	15	13	36	1.87
26205754--26205814	7	8.6	7	72	16	54	39	1	0	59	1.08
26205910--26205946	17	2.1	18	90	5	58	32	43	0	24	1.55
26205940--26206025	37	2.3	37	96	4	156	29	30	0	40	1.57
26207090--26207144	28	1.9	28	85	3	74	61	5	5	27	1.40
26208725--26208784	28	2.2	28	90	3	95	36	15	18	30	1.91
26209074--26209105	3	10.7	3	100	0	64	34	0	31	34	1.58
26216575--26217122	50	11.0	50	70	6	257	24	20	23	32	1.98
26216549--26217137	100	5.9	100	87	2	779	25	19	22	32	1.98
26218627--26218675	15	3.5	14	78	8	55	14	14	0	71	1.15
26218625--26218668	21	2.0	22	91	4	72	13	18	0	68	1.22
26218627--26218675	7	7.0	7	80	17	57	14	14	0	71	1.15
26236912--26237269	44	8.0	44	74	12	164	31	17	21	29	1.96
26237103--26237269	88	1.9	88	81	0	199	31	16	23	28	1.96
26240418--26240632	31	7.0	31	76	9	199	45	15	5	33	1.68
26240426--26240676	92	2.7	92	92	3	409	46	14	5	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26247241--26247399	46	3.4	45	77	7	131	35	11	23	30	1.90
26249720--26249753	5	6.8	5	100	0	68	41	17	0	41	1.50
26250532--26250661	65	2.0	65	100	0	260	33	6	16	43	1.73
26257309--26257360	26	1.9	26	84	7	68	48	5	15	30	1.68
26264457--26264515	24	2.5	24	78	10	66	61	16	0	22	1.35
26266545--26266637	48	1.9	48	84	0	123	26	24	19	29	1.98
26269902--26269930	10	3.0	10	95	5	51	51	0	10	37	1.36
26270151--26270265	37	3.1	37	78	9	153	17	13	32	36	1.89
26270140--26270296	74	2.1	74	97	0	296	15	12	31	40	1.85
26270167--26270303	37	3.7	36	77	9	125	17	12	32	37	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145