genome.fa.s2.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  41  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13197096--13197147	26	2.0	26	100	0	104	42	11	7	38	1.70
13200573--13200636	27	2.4	26	82	7	74	51	1	1	45	1.20
13203862--13203929	30	2.3	30	82	5	75	47	7	17	27	1.74
13206740--13207023	50	5.6	50	82	6	295	26	20	30	22	1.98
13206740--13207023	100	2.8	102	82	7	326	26	20	30	22	1.98
13217190--13217223	16	2.2	16	89	5	52	50	5	8	35	1.58
13219460--13219493	17	2.0	17	88	0	50	44	0	23	32	1.54
13223303--13223466	44	3.6	44	80	13	195	31	15	21	30	1.95
13223354--13223473	51	2.4	51	94	0	204	35	15	21	27	1.93
13225492--13225525	18	1.9	17	88	5	50	50	0	0	50	1.00
13236487--13237121	317	2.0	317	100	0	1270	37	9	10	42	1.71
13241255--13241302	6	7.8	6	81	4	51	18	2	4	75	1.07
13241256--13241280	13	1.9	13	100	0	50	16	4	0	80	0.87
13241256--13241302	19	2.5	19	79	3	51	19	2	4	74	1.09
13250735--13250800	25	2.7	25	85	2	98	33	24	22	19	1.97
13255665--13255697	16	2.1	16	100	0	66	42	0	24	33	1.55
13255693--13255866	65	2.7	65	88	1	242	32	18	15	33	1.93
13259245--13259311	25	2.7	26	83	6	84	61	1	5	31	1.29
13259276--13259332	21	2.8	20	79	12	62	64	0	3	31	1.10
13259270--13259332	25	2.9	21	84	13	67	65	0	3	31	1.09
13259276--13259332	20	2.8	20	82	12	64	64	0	3	31	1.10
13263832--13265285	731	2.0	733	85	3	2003	38	17	12	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13265643--13265667	11	2.3	11	100	0	50	16	24	0	60	1.36
13269603--13269644	19	2.4	16	88	11	57	76	2	0	21	0.90
13273938--13273985	20	2.3	21	85	3	71	27	31	20	20	1.98
13276394--13276426	15	2.2	15	94	0	57	12	0	36	51	1.39
13288105--13288145	2	20.5	2	94	0	73	0	0	46	53	1.00
13290413--13290572	79	2.0	79	86	0	221	34	6	15	43	1.73
13297322--13297480	43	3.7	43	73	11	130	34	26	15	23	1.95
13297285--13297551	85	3.2	83	84	8	325	35	25	15	23	1.94
13297364--13297517	36	3.9	37	78	16	150	34	25	15	24	1.95
13297765--13297934	84	2.0	85	97	1	324	28	18	11	41	1.86
13303953--13304045	39	2.5	37	80	7	98	27	29	22	20	1.98
13304178--13304271	37	2.6	36	81	11	102	32	22	1	43	1.60
13304589--13304633	22	2.0	24	91	8	76	24	22	0	53	1.46
13304958--13304988	6	5.2	6	92	0	53	0	19	0	80	0.71
13305262--13305318	24	2.4	24	100	0	114	26	17	5	50	1.67
13305699--13306085	198	2.0	198	91	1	623	33	17	7	41	1.79
13313068--13313114	16	2.9	16	87	6	60	0	12	10	76	1.02
13317692--13317741	16	3.1	16	88	0	73	34	34	0	32	1.58
13319822--13319879	30	1.9	30	89	0	89	41	3	24	31	1.71
13324783--13324807	13	1.9	13	100	0	50	68	0	0	32	0.90
13329710--13329770	28	2.1	29	82	8	72	13	32	29	24	1.93
13330460--13330500	3	13.7	3	100	0	82	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13330649--13330697	23	2.0	26	88	11	77	48	0	20	30	1.50
13331598--13331722	24	5.3	24	90	7	195	38	23	22	16	1.93
13331598--13331722	49	2.7	46	90	7	191	38	23	22	16	1.93
13332798--13332832	13	2.7	13	91	8	54	65	0	0	34	0.93
13341964--13342092	63	2.0	63	100	0	258	47	12	10	29	1.75
13344239--13344278	21	1.9	21	85	10	55	25	7	12	55	1.63
13348104--13348143	18	2.4	17	91	8	64	65	0	7	27	1.20
13350935--13351078	63	2.3	63	79	1	155	20	28	26	25	1.99
13353418--13353460	22	1.9	23	85	4	61	11	20	23	44	1.84
13353532--13353628	43	2.3	43	87	3	133	22	18	25	32	1.97
13358899--13358937	16	2.6	15	88	8	53	46	0	35	17	1.49
13359271--13359369	47	2.1	48	94	1	173	47	0	7	45	1.30
13359354--13359407	19	2.8	18	78	10	54	20	3	5	70	1.23
13359355--13359407	25	2.1	26	82	3	63	18	3	5	71	1.21
13360086--13360114	15	1.9	15	100	0	58	34	37	0	27	1.57
13360404--13360595	99	1.9	99	90	2	305	27	24	22	25	2.00
13361848--13361885	3	12.7	3	100	0	76	0	34	0	65	0.93
13371315--13371340	5	5.2	5	100	0	52	42	0	0	57	0.98
13371319--13371469	75	2.0	76	98	1	295	46	9	1	43	1.44
13379012--13379081	30	2.3	30	82	0	86	24	31	25	18	1.98
13379714--13379850	73	1.9	73	93	0	238	37	27	5	30	1.78
13380950--13380985	11	3.2	11	84	7	54	33	2	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13380968--13381017	9	5.9	8	81	9	55	22	0	2	76	0.89
13380969--13381016	25	1.9	25	86	0	69	20	0	2	77	0.88
13380976--13381019	17	2.7	15	86	13	52	20	0	2	77	0.88
13381025--13381071	22	2.1	22	92	0	76	34	6	0	59	1.23
13382980--13383051	29	2.5	28	73	10	65	45	8	4	41	1.53
13383357--13383394	18	2.1	18	90	0	58	42	21	15	21	1.89
13391391--13391575	46	4.0	46	89	0	280	36	10	24	28	1.88
13392144--13392189	23	1.9	24	91	8	76	45	4	21	28	1.71
13396950--13396984	9	3.8	9	88	7	52	0	17	0	82	0.66
13397312--13397377	4	17.5	4	74	22	63	0	24	1	74	0.91
13397312--13397377	10	6.6	10	81	16	66	0	24	1	74	0.91
13397312--13397374	25	2.4	25	77	15	74	0	23	1	74	0.90
13397484--13397525	22	2.0	20	90	9	66	0	30	0	69	0.89
13397491--13397526	11	3.3	11	85	14	56	0	27	0	72	0.85
13397610--13397661	27	1.9	27	84	7	70	5	9	9	75	1.20
13397878--13398001	29	4.3	29	85	6	162	37	4	22	35	1.73
13397878--13398001	28	4.3	28	84	6	158	37	4	22	35	1.73
13397880--13398001	58	2.1	58	89	3	183	38	4	22	35	1.73
13398334--13399361	151	6.8	151	84	1	1168	33	19	17	29	1.95
13398305--13399361	75	14.0	75	83	2	1164	33	19	17	28	1.95
13401622--13401659	19	2.0	19	100	0	76	21	26	5	47	1.71
13405031--13405274	50	4.8	50	76	3	229	25	15	27	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13405035--13405274	51	4.8	50	78	5	223	25	15	26	32	1.96
13405035--13405274	101	2.4	101	85	1	311	25	15	26	32	1.96
13405035--13405310	101	2.7	100	76	10	265	26	15	26	32	1.95
13407036--13407085	26	1.9	26	95	0	91	30	0	34	36	1.58
13409970--13410060	47	1.9	48	82	6	114	24	14	25	36	1.93
13412247--13412484	118	2.0	119	99	0	469	36	6	17	38	1.76
13413303--13413489	50	3.7	50	79	2	196	24	16	28	30	1.97
13424193--13424232	21	1.9	21	89	0	62	40	2	10	47	1.50
13424526--13424577	15	3.3	16	73	21	56	3	23	0	73	1.00
13425016--13425054	20	2.0	20	95	5	71	0	23	0	76	0.78
13425137--13425194	22	2.7	21	80	20	66	1	34	0	63	1.04
13425160--13425196	11	3.4	11	85	14	58	0	29	0	70	0.88
13425509--13425612	29	3.6	28	83	6	127	39	1	21	37	1.64
13426039--13426089	27	1.9	27	88	4	77	27	0	3	68	1.07
13429140--13429177	18	2.1	19	90	9	62	44	39	5	10	1.61
13432394--13432486	3	30.0	3	72	10	71	61	3	4	31	1.31
13432394--13432458	31	2.1	31	82	5	78	58	4	3	33	1.34
13434519--13434577	23	2.5	24	83	10	77	62	1	1	33	1.15
13435546--13435584	3	13.0	3	88	0	60	38	0	61	0	0.96
13435541--13435584	9	4.8	9	88	2	61	40	0	59	0	0.98
13439264--13439298	12	2.9	12	95	0	61	0	28	42	28	1.56
13440826--13441406	40	14.5	40	99	0	1144	27	22	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13444404--13444662	129	2.0	130	99	0	511	36	26	14	23	1.93
13446373--13446611	118	2.0	120	97	1	455	43	13	8	34	1.75
13449112--13449228	24	5.2	22	79	16	109	0	30	0	69	0.89
13449124--13449228	24	4.9	23	78	16	111	0	31	0	68	0.90
13449148--13449219	10	6.8	10	78	12	81	0	27	0	72	0.85
13449119--13449224	34	3.4	32	79	16	89	0	31	0	68	0.89
13449117--13449248	44	3.0	43	79	10	140	0	31	0	67	1.01
13451018--13451049	3	10.7	3	93	0	55	0	31	0	68	0.90
13452836--13452875	21	1.9	21	90	10	64	52	17	7	22	1.69
13454530--13454804	146	1.9	146	94	1	489	40	16	5	38	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145