genome.fa.s2.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  28  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9038966--9039019	9	6.0	9	83	12	67	11	0	1	87	0.63
9040602--9040641	16	2.5	16	91	0	62	47	2	7	42	1.45
9040911--9040966	20	2.9	19	92	5	94	66	5	7	21	1.37
9045849--9046146	149	2.0	149	98	0	578	29	20	21	27	1.98
9047743--9047967	86	2.6	88	83	3	283	30	21	21	25	1.98
9047745--9047967	90	2.5	87	83	2	277	30	21	21	26	1.99
9047831--9047999	90	1.9	90	80	2	196	30	23	21	24	1.99
9048122--9048251	44	3.0	43	73	6	109	23	26	27	21	1.99
9048235--9048521	44	6.7	44	78	7	266	27	18	26	26	1.98
9048834--9048944	44	2.5	43	85	2	150	33	20	16	29	1.94
9049254--9049550	44	6.8	43	74	11	239	29	20	22	26	1.98
9049254--9049507	134	1.9	132	84	7	343	30	20	23	25	1.98
9050809--9050857	18	2.8	17	78	6	62	24	0	4	71	1.03
9065190--9065302	21	5.3	21	65	18	72	28	23	3	44	1.70
9065195--9065338	43	3.3	43	98	0	270	27	24	4	43	1.72
9070260--9070315	26	2.4	24	75	24	57	60	7	1	30	1.33
9071856--9071932	1	77.0	1	85	0	64	87	0	7	5	0.68
9080235--9080311	22	3.4	22	67	19	68	35	2	25	36	1.70
9080230--9080324	46	2.1	46	100	0	190	33	2	23	41	1.66
9083653--9083686	3	11.3	3	100	0	68	32	0	0	67	0.91
9086435--9086578	41	3.5	41	91	0	218	25	17	24	32	1.97
9089939--9089969	12	2.6	12	94	0	53	29	41	22	6	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9098791--9098916	67	1.9	67	85	6	175	20	21	23	34	1.96
9100710--9100751	14	3.1	13	86	13	50	64	0	0	35	0.94
9106300--9106339	21	1.9	21	84	0	53	65	2	0	32	1.06
9114725--9116120	698	2.0	698	100	0	2792	30	16	20	32	1.94
9120618--9120652	7	5.0	7	100	0	70	28	28	14	28	1.95
9124051--9124311	114	2.3	113	79	6	267	33	18	22	25	1.97
9125104--9125183	15	5.7	15	79	19	84	25	0	38	36	1.56
9125111--9125175	32	2.0	32	90	6	103	26	0	38	35	1.57
9125104--9125178	7	11.0	7	78	16	77	25	0	40	34	1.56
9125149--9125173	13	1.9	13	100	0	50	16	0	52	32	1.44
9125349--9125411	14	4.5	14	78	5	65	15	1	47	34	1.56
9125342--9125411	15	5.0	14	73	16	65	15	1	45	37	1.55
9125324--9125411	29	3.1	28	82	11	99	17	2	45	35	1.61
9125366--9125414	15	3.3	15	83	11	66	12	2	48	36	1.52
9125353--9125414	7	8.7	7	75	15	56	12	1	50	35	1.51
9126166--9126193	7	4.0	7	100	0	56	14	0	14	71	1.15
9126226--9126294	31	2.2	32	85	10	90	23	5	18	52	1.67
9129995--9130074	33	2.4	33	87	4	108	40	16	37	6	1.74
9130015--9130074	12	5.2	12	70	11	54	41	16	36	5	1.70
9131855--9131949	44	2.2	43	86	1	127	30	26	17	25	1.98
9134450--9134632	46	4.0	46	96	0	312	34	10	26	28	1.89
9138846--9139199	114	3.1	113	85	6	469	27	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9139095--9139269	73	2.4	73	91	1	280	25	24	22	27	2.00
9142291--9142322	15	2.1	15	100	0	64	21	18	18	40	1.91
9142699--9142936	59	4.0	59	99	0	467	27	23	21	27	1.99
9148483--9148796	156	2.0	157	99	0	621	45	5	8	40	1.58
9148548--9148783	74	3.1	74	65	21	205	46	5	8	39	1.58
9148837--9148866	3	10.0	3	100	0	60	33	33	0	33	1.58
9153540--9153570	16	1.9	16	93	0	53	83	0	16	0	0.64
9153971--9154047	30	2.6	30	79	2	84	51	3	7	36	1.49
9159947--9159992	19	2.6	18	93	6	76	54	0	4	41	1.20
9160034--9160124	17	5.4	17	67	23	57	51	1	4	42	1.29
9162020--9162064	18	2.6	18	89	10	67	60	22	4	13	1.51
9164136--9164217	39	2.1	40	97	2	157	30	2	14	52	1.55
9167728--9167798	27	2.6	27	97	0	133	25	23	28	22	2.00
9174488--9174580	25	3.7	25	82	1	96	32	18	25	23	1.97
9174707--9174782	24	3.1	24	83	5	82	35	22	23	18	1.96
9185142--9185334	75	2.6	75	83	1	217	46	18	3	31	1.66
9191170--9191220	23	2.2	23	86	10	77	52	0	1	45	1.12
9191173--9191215	18	2.4	18	80	7	52	46	0	2	51	1.13
9191537--9191591	28	2.0	27	82	13	67	41	1	21	34	1.64
9191580--9191614	18	1.9	18	94	0	61	40	0	28	31	1.57
9211369--9211431	31	2.0	31	96	0	117	50	9	19	20	1.74
9215471--9215501	5	6.2	5	100	0	62	38	41	0	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9217224--9217252	7	4.1	7	100	0	58	13	13	27	44	1.82
9220908--9220986	38	2.1	38	86	9	108	32	17	13	35	1.90
9225770--9225836	36	1.9	34	81	6	80	53	2	7	35	1.44
9226532--9226594	19	3.3	19	75	18	60	44	0	28	26	1.55
9232144--9232279	51	2.7	52	83	4	170	23	19	27	29	1.98
9232276--9232370	45	2.1	45	92	0	163	26	18	24	30	1.98
9238628--9238678	24	2.1	25	85	3	68	56	9	1	31	1.43
9238857--9238897	2	20.5	2	100	0	82	48	0	0	51	1.00
9240342--9240407	3	22.3	3	77	20	68	63	3	1	31	1.19
9240341--9240390	18	2.8	18	87	9	75	62	0	2	36	1.07
9241001--9241033	17	1.9	17	93	0	57	81	6	3	9	0.95
9241811--9242266	44	10.5	43	70	11	209	27	22	20	28	1.99
9241800--9242048	128	1.9	128	86	1	347	27	21	21	29	1.99
9242615--9242824	44	4.8	44	85	3	271	28	26	18	26	1.98
9242928--9243068	45	3.2	45	64	13	114	17	24	28	29	1.98
9242945--9243085	44	3.3	44	62	13	103	21	24	28	24	1.99
9242837--9243177	173	2.0	173	90	1	540	20	24	28	27	1.99
9242835--9243184	88	4.0	88	89	3	510	20	24	28	28	1.99
9245799--9245849	21	2.4	22	80	9	61	68	7	1	21	1.25
9252381--9252449	20	3.5	20	75	0	75	28	18	17	34	1.94
9252367--9252482	40	2.9	41	80	5	139	27	18	16	37	1.92
9252462--9252568	43	2.5	43	80	6	119	27	19	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9254980--9255004	7	3.6	7	100	0	50	40	12	0	48	1.40
9254987--9255023	18	2.0	19	85	15	51	37	16	0	45	1.47
9254974--9255023	25	1.9	27	84	15	70	38	14	2	46	1.56
9266769--9266863	46	2.1	46	95	0	172	30	23	22	24	1.99
9270804--9270829	8	3.2	8	100	0	52	61	23	0	15	1.33
9279772--9279814	21	2.0	21	100	0	86	46	4	0	48	1.22
9284281--9284319	13	3.0	13	85	7	53	46	0	5	48	1.24
9286067--9286116	20	2.5	20	83	6	66	44	16	12	28	1.83
9290425--9290464	17	2.3	18	86	4	55	35	7	0	57	1.27
9295754--9295989	52	4.7	51	68	14	166	42	11	3	41	1.59
9295690--9295992	149	2.0	148	89	1	455	45	11	4	37	1.61
9295810--9295878	23	3.0	23	71	14	61	42	13	0	44	1.43
9296210--9296235	3	8.7	3	100	0	52	0	0	30	69	0.89
9296348--9296458	3	36.7	3	87	1	114	56	1	7	34	1.37
9296894--9297199	42	7.3	42	84	6	352	38	22	17	21	1.93
9297613--9297654	22	2.0	21	85	4	57	2	16	4	76	1.07
9298187--9298252	35	1.9	35	84	9	91	6	24	3	66	1.28
9315714--9315740	2	13.5	2	100	0	54	0	0	48	51	1.00
9320705--9321017	45	7.2	43	78	7	321	26	15	23	34	1.95
9320705--9321020	85	3.7	85	90	3	456	26	15	23	34	1.94
9325280--9325318	3	13.0	3	86	0	51	58	2	5	33	1.33
9329828--9329920	46	2.0	46	97	0	177	18	6	46	29	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9330729--9330757	2	14.5	2	100	0	58	51	0	0	48	1.00
9338011--9338045	18	1.9	18	88	11	54	62	0	0	37	0.95
9341372--9341397	13	2.0	13	100	0	52	61	7	7	23	1.49
9344115--9344149	19	1.9	17	88	11	52	40	20	11	28	1.87
9361241--9361289	26	1.9	25	87	4	71	12	18	16	53	1.73
9364730--9364776	24	2.0	23	84	8	60	61	0	0	38	0.96
9374487--9374521	11	3.0	12	83	8	54	37	0	0	62	0.95
9377520--9377583	13	4.9	13	72	14	51	35	7	20	35	1.82
9377516--9377583	26	2.6	25	69	15	66	38	7	19	35	1.79
9378544--9378605	15	4.2	15	77	2	63	46	0	4	48	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145