genome.fa.s2.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  46  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14874382--14874678	147	2.0	148	99	0	587	34	13	10	41	1.79
14877757--14877810	27	2.0	27	92	0	90	24	22	7	46	1.77
14878985--14879013	13	2.1	14	93	6	51	68	13	6	10	1.37
14879415--14879442	12	2.3	12	100	0	56	35	14	10	39	1.81
14881373--14881411	20	2.0	20	89	0	60	38	20	25	15	1.92
14886430--14886496	14	4.3	15	78	10	64	47	7	17	26	1.74
14890026--14890279	126	2.0	126	96	0	472	29	17	23	29	1.97
14901434--14901487	23	2.4	22	78	12	56	27	1	27	42	1.66
14903074--14903266	50	3.7	50	81	4	206	27	22	27	21	1.99
14903515--14903553	12	3.2	12	85	0	51	51	5	23	20	1.67
14909845--14909935	25	3.7	25	73	17	82	27	23	21	27	1.99
14936718--14936742	13	1.9	13	100	0	50	28	40	0	32	1.57
14951161--14951194	7	4.9	7	100	0	68	29	0	0	70	0.87
14951379--14951430	22	2.2	24	83	6	63	42	5	1	50	1.37
14951913--14951948	18	1.9	18	88	5	54	58	0	2	38	1.13
14953063--14953106	22	2.0	22	100	0	88	36	18	13	31	1.90
14953649--14953712	30	2.1	31	82	2	76	53	10	3	32	1.52
14961405--14961473	35	2.0	35	97	0	129	23	18	5	52	1.67
14961592--14961626	18	1.9	18	88	0	52	51	0	11	37	1.38
14970771--14970806	17	2.1	17	94	0	63	25	33	5	36	1.79
14971674--14971743	35	2.0	35	88	0	104	24	24	24	27	2.00
14974470--14974571	50	2.1	49	88	1	150	30	8	12	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14975731--14975865	71	1.9	71	81	0	162	22	17	26	33	1.96
14978545--14978580	18	2.0	18	94	0	63	22	30	0	47	1.52
14978550--14978593	18	2.4	18	85	7	54	20	29	2	47	1.62
14991584--14991722	56	2.6	53	85	6	167	23	29	21	25	1.99
14999833--14999858	2	13.0	2	100	0	52	0	0	50	50	1.00
15002054--15002606	278	2.0	279	86	1	779	31	18	15	34	1.92
15004499--15004639	75	1.9	75	83	2	185	33	4	18	43	1.72
15004721--15004800	41	2.0	41	84	0	106	27	13	21	37	1.91
15004988--15005061	33	2.2	34	85	2	96	28	12	14	44	1.81
15011791--15011815	10	2.5	10	100	0	50	40	0	12	48	1.40
15011919--15011982	6	10.7	6	100	0	128	32	0	17	50	1.46
15012260--15012400	75	1.9	75	80	5	169	34	4	17	43	1.70
15012712--15012865	69	2.2	71	86	5	206	30	11	16	42	1.82
15016036--15016081	16	2.9	16	78	15	51	50	6	0	43	1.28
15017557--15017599	21	2.0	21	95	0	77	27	25	13	32	1.94
15019391--15019431	14	3.0	14	85	3	57	36	0	0	63	0.95
15020283--15020318	6	5.8	6	87	6	54	63	0	0	36	0.94
15020946--15021034	31	2.9	30	80	6	99	42	7	0	49	1.32
15021197--15021235	5	8.0	5	91	2	62	41	15	0	43	1.46
15026970--15027245	30	9.3	30	72	11	176	39	12	23	23	1.89
15026970--15027159	60	3.2	59	78	8	206	40	12	24	23	1.88
15027111--15027184	29	2.5	30	84	4	96	44	12	22	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15027002--15027290	30	9.7	30	74	8	157	39	13	24	23	1.90
15027111--15027286	59	3.0	58	73	5	156	39	13	23	22	1.90
15027081--15027272	89	2.2	89	83	4	228	41	13	22	23	1.88
15033463--15033738	30	9.3	30	72	11	176	39	12	23	23	1.89
15033463--15033652	60	3.2	59	78	8	206	40	12	24	23	1.88
15033604--15033677	29	2.5	30	84	4	96	44	12	22	20	1.84
15033495--15033783	30	9.7	30	74	8	157	39	13	24	23	1.90
15033604--15033779	59	3.0	58	73	5	156	39	13	23	22	1.90
15033574--15033765	89	2.2	89	83	4	228	41	13	22	23	1.88
15039979--15040015	16	2.3	16	90	9	58	48	2	18	29	1.62
15040731--15040817	36	2.4	36	82	3	104	36	16	14	32	1.89
15041986--15042030	17	2.4	18	82	14	56	33	0	20	46	1.51
15045702--15045739	19	2.0	19	85	10	51	21	42	0	36	1.53
15047664--15047707	21	2.0	22	83	12	56	40	2	13	43	1.57
15048318--15048456	46	3.0	46	90	2	217	35	10	25	28	1.88
15051329--15051381	27	2.0	26	82	14	63	45	0	0	54	0.99
15051541--15051710	91	2.0	85	80	11	195	37	22	8	31	1.84
15051853--15051904	28	1.9	26	88	7	77	59	0	1	38	1.08
15052196--15052251	19	2.9	19	77	15	62	62	1	8	26	1.35
15052201--15052254	9	5.9	9	73	26	51	62	1	5	29	1.28
15052290--15052319	16	1.9	15	93	6	51	16	0	3	80	0.85
15052426--15052487	20	3.2	20	77	11	67	27	3	3	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15052455--15052507	27	1.9	27	85	11	72	41	1	0	56	1.10
15052481--15052538	18	3.2	19	78	7	66	44	0	0	55	0.99
15052691--15052960	89	3.0	87	87	4	353	33	11	20	35	1.88
15054157--15054220	31	2.1	31	96	0	119	42	3	3	51	1.33
15057943--15058271	31	10.6	31	82	3	310	30	8	16	44	1.77
15057943--15058271	62	5.3	62	85	0	390	30	8	16	44	1.77
15057943--15058271	93	3.5	93	84	0	408	30	8	16	44	1.77
15058407--15058533	43	3.0	40	78	11	139	26	15	28	29	1.96
15068194--15068328	33	3.8	34	72	21	123	20	20	27	31	1.97
15071570--15071626	18	2.9	19	84	10	71	71	3	21	3	1.15
15083343--15083382	19	2.1	19	90	0	62	40	0	37	22	1.54
15084032--15084066	1	35.0	1	100	0	70	100	0	0	0	0.00
15090416--15090451	18	2.0	18	100	0	72	38	27	22	11	1.88
15091203--15091249	22	2.1	22	84	0	58	19	19	44	17	1.87
15091357--15091398	22	1.9	22	95	0	75	14	14	52	19	1.75
15092217--15092246	16	1.9	16	93	6	53	63	0	3	33	1.11
15095108--15095233	35	3.6	35	89	0	180	24	13	18	43	1.86
15095331--15095430	49	2.0	49	84	3	130	24	21	20	35	1.96
15101021--15101058	3	12.7	3	100	0	76	65	34	0	0	0.93
15101059--15101217	4	39.8	4	100	0	318	49	0	25	25	1.50
15101778--15101812	18	1.9	18	94	0	61	22	20	25	31	1.98
15106265--15106330	25	2.6	25	75	17	82	43	3	18	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15109836--15109900	30	2.1	30	82	5	76	12	10	7	69	1.37
15114943--15114980	19	2.0	19	100	0	76	57	15	10	15	1.64
15116315--15116586	43	6.3	43	80	5	275	28	29	18	23	1.98
15116305--15116586	85	3.3	86	82	3	300	27	29	18	24	1.98
15116317--15116598	128	2.2	127	79	7	311	28	29	17	24	1.97
15117274--15117393	60	2.0	60	96	0	222	45	10	17	25	1.81
15120896--15120925	13	2.3	13	100	0	60	50	0	50	0	1.00
15121026--15121188	41	4.0	41	76	10	127	30	25	19	24	1.98
15121226--15121364	40	3.5	40	78	1	145	22	17	18	41	1.91
15152394--15152441	10	4.6	10	77	10	51	60	2	0	37	1.09
15169709--15169756	20	2.4	20	85	0	69	25	31	16	27	1.97
15171652--15171694	21	2.1	20	86	4	59	62	0	25	11	1.29
15171652--15171703	27	2.0	25	85	7	68	63	0	23	13	1.29
15171670--15171752	39	2.2	37	80	4	94	65	1	20	13	1.34
15172572--15172643	33	2.2	33	87	0	99	33	22	15	29	1.94
15173512--15173555	20	2.2	20	95	0	79	25	34	15	25	1.95
15174247--15174294	21	2.3	21	82	7	53	33	4	16	45	1.67
15183180--15183209	2	15.0	2	100	0	60	50	0	0	50	1.00
15183334--15183362	8	3.8	8	95	4	51	51	0	0	48	1.00
15183389--15183471	30	2.8	30	77	14	82	32	6	2	59	1.35
15184215--15184613	124	3.2	124	92	0	645	28	18	23	30	1.97
15184867--15184908	15	2.6	16	77	7	50	14	0	28	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15184870--15184908	16	2.4	17	79	12	55	12	0	30	56	1.37
15184880--15184916	9	4.3	9	83	10	51	13	0	29	56	1.37
15184969--15185233	125	2.1	125	94	0	467	29	14	22	33	1.93
15186464--15186532	25	2.7	25	79	2	84	53	0	2	43	1.15
15194541--15194574	17	2.0	17	88	0	50	44	2	0	52	1.16
15197555--15197587	17	1.9	17	93	0	57	51	6	0	42	1.26
15200532--15200574	22	2.0	21	82	13	52	34	4	20	39	1.74
15202004--15202059	20	2.8	20	80	0	67	51	0	26	21	1.48
15215610--15215716	20	5.4	20	71	8	85	18	32	14	34	1.91
15215600--15215726	39	3.3	39	89	0	191	17	30	14	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145