genome.fa.s2.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  56  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18168998--18169035	19	2.1	19	90	5	60	31	5	10	52	1.58
18169394--18169531	66	2.1	66	94	2	244	13	10	21	54	1.69
18169394--18169497	32	3.2	32	68	23	92	14	9	21	54	1.68
18178857--18178896	3	13.3	3	100	0	80	67	0	0	32	0.91
18182617--18183189	125	4.5	125	79	5	614	30	16	22	30	1.96
18182620--18183189	251	2.3	254	86	2	772	30	16	22	30	1.96
18186387--18186498	7	15.4	7	70	10	55	14	0	30	54	1.46
18186362--18186476	29	4.2	29	74	15	93	17	0	31	50	1.52
18186415--18186611	44	4.5	43	88	4	270	16	0	29	53	1.47
18186415--18186615	22	9.1	22	80	6	228	16	0	29	53	1.47
18186392--18186542	29	5.2	28	69	15	101	13	0	31	54	1.45
18186429--18186656	66	3.5	64	80	11	223	17	1	28	51	1.56
18186898--18186945	21	2.3	22	79	17	57	6	27	33	33	1.82
18189087--18189186	51	2.0	51	83	0	128	47	1	25	27	1.59
18189145--18189199	11	4.8	12	81	18	73	43	0	30	25	1.55
18194844--18195059	105	2.1	105	95	0	387	34	11	25	28	1.91
18197680--18197755	25	3.0	25	81	9	75	34	18	23	23	1.96
18200249--18200433	46	4.0	46	89	2	264	28	23	10	36	1.89
18213159--18213341	84	2.2	84	100	0	366	49	3	3	43	1.35
18213211--18213339	39	3.2	39	64	20	100	50	3	3	42	1.36
18215632--18215683	24	2.2	24	92	0	86	51	9	1	36	1.46
18219921--18219972	24	2.2	24	85	0	68	50	7	3	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18220679--18220756	31	2.5	30	80	10	86	41	5	11	42	1.63
18220640--18220756	62	1.9	61	81	8	139	41	6	13	38	1.71
18232182--18232352	87	2.0	87	96	0	315	28	14	8	48	1.73
18235329--18235371	10	4.3	10	80	11	52	41	0	0	58	0.98
18237312--18237368	3	18.7	3	78	10	53	33	8	0	57	1.29
18237490--18237562	27	2.7	26	78	18	69	32	5	5	56	1.45
18247273--18247305	10	3.4	10	87	8	50	75	0	0	24	0.80
18253631--18253678	20	2.4	20	100	0	96	43	8	4	43	1.53
18254911--18254972	32	1.9	32	96	0	115	33	14	6	45	1.71
18255734--18255787	25	2.2	25	89	0	81	33	25	12	27	1.93
18255775--18255850	25	3.0	25	82	3	89	42	26	11	19	1.86
18255782--18255850	26	2.7	26	88	4	95	42	27	13	17	1.86
18257874--18257936	26	2.4	26	84	5	74	17	26	22	33	1.96
18257981--18258040	24	2.5	24	88	2	93	18	26	18	36	1.94
18259145--18259224	40	2.0	40	95	0	142	23	22	27	26	2.00
18265059--18265104	20	2.3	21	81	11	60	47	8	32	10	1.69
18267280--18267330	17	3.0	17	76	0	57	70	7	5	15	1.30
18272495--18272538	8	5.4	8	88	2	52	63	27	2	6	1.31
18272481--18272531	4	13.0	4	79	8	52	70	21	3	3	1.20
18272502--18272538	12	3.0	12	88	4	56	67	27	0	5	1.12
18282165--18282219	20	2.9	18	78	21	51	69	1	5	23	1.19
18283069--18283147	13	6.5	13	80	16	107	48	15	0	36	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18283069--18283134	23	2.9	23	97	0	123	48	15	0	36	1.45
18301333--18301374	22	2.0	21	85	4	57	66	2	2	28	1.16
18306830--18306887	8	7.4	8	77	14	59	51	3	1	43	1.28
18307395--18307444	21	2.4	20	77	9	55	32	8	28	32	1.86
18308094--18308141	24	2.0	24	100	0	96	12	25	12	50	1.75
18308515--18308570	21	2.7	21	85	0	85	25	7	37	30	1.82
18309453--18309501	21	2.4	21	86	6	66	73	6	2	18	1.14
18309549--18309608	27	2.2	27	91	5	95	10	26	36	26	1.88
18311343--18311421	39	2.0	39	100	0	158	36	15	7	40	1.75
18311566--18311784	103	2.1	105	80	10	234	25	11	19	43	1.84
18317445--18317496	16	3.3	16	82	12	63	15	32	1	50	1.55
18319358--18319398	20	2.1	19	81	4	55	46	0	2	51	1.14
18320241--18320285	22	2.0	23	86	4	65	31	0	20	48	1.49
18329804--18329840	18	2.0	19	89	5	58	48	0	2	48	1.15
18332762--18332872	47	2.4	47	83	6	152	21	11	18	48	1.79
18333243--18333273	8	3.9	8	100	0	62	22	0	12	64	1.27
18335748--18335982	124	1.9	126	95	2	429	39	11	11	37	1.78
18341131--18341471	169	2.0	170	99	0	675	41	17	9	30	1.82
18366405--18366482	12	6.7	11	76	15	77	61	7	5	25	1.44
18366405--18366485	24	3.5	24	76	10	96	61	7	4	25	1.43
18368929--18369006	27	2.9	27	92	1	122	41	12	24	21	1.88
18370308--18370527	108	2.1	105	93	3	379	28	8	25	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18372953--18373006	3	18.0	3	100	0	108	66	0	0	33	0.92
18377063--18377116	26	2.0	27	85	3	74	68	0	3	27	1.06
18378945--18378984	3	13.3	3	100	0	80	35	0	0	65	0.93
18385592--18385772	42	4.3	42	85	2	220	48	16	19	16	1.82
18385602--18385661	21	2.9	21	72	5	59	46	18	18	16	1.84
18385656--18385771	21	5.5	21	77	4	117	49	13	19	17	1.80
18387825--18387849	10	2.5	10	100	0	50	12	24	28	36	1.91
18392827--18392998	42	4.1	41	86	1	200	47	15	21	15	1.83
18392826--18392976	21	7.2	21	72	5	99	47	15	20	16	1.82
18392816--18392992	84	2.1	84	85	2	239	46	15	22	16	1.84
18392844--18392997	21	7.3	20	71	10	85	48	16	20	14	1.81
18402202--18402273	12	5.8	12	70	22	51	26	1	1	70	1.03
18402200--18402273	22	3.6	21	79	18	84	25	1	1	71	1.02
18402201--18402273	19	3.7	19	75	13	60	26	1	1	71	1.02
18402195--18402272	29	2.7	29	83	11	90	25	1	1	71	1.01
18402234--18402279	22	2.1	22	84	8	58	28	4	0	67	1.10
18402224--18402299	33	2.2	33	81	9	80	27	5	1	65	1.22
18402383--18402424	12	3.8	11	80	20	52	23	2	0	73	0.94
18402383--18402429	15	3.5	13	83	16	60	23	2	0	74	0.93
18403436--18403486	13	3.4	15	74	17	52	78	5	9	5	1.08
18406917--18406966	21	2.3	22	82	10	66	34	4	20	42	1.70
18409122--18409229	54	2.0	52	81	10	121	25	35	25	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18421700--18421734	10	3.4	10	88	7	52	62	0	0	37	0.95
18421700--18421740	21	2.0	20	86	9	57	58	0	0	41	0.98
18424302--18424389	36	2.4	36	88	0	122	40	28	12	18	1.87
18426734--18427007	136	2.0	137	99	0	541	52	5	9	31	1.57
18429022--18429142	60	2.0	60	98	0	233	28	19	21	30	1.97
18430606--18430648	10	4.1	10	82	11	59	37	0	2	60	1.10
18434858--18434892	18	1.9	18	88	11	54	60	8	2	28	1.41
18436978--18437794	407	2.0	407	97	0	1526	30	16	20	32	1.95
18445076--18445161	23	3.7	23	76	11	95	43	22	16	18	1.88
18445074--18445164	46	2.0	46	91	0	146	42	20	16	19	1.89
18454566--18454609	20	2.2	20	88	8	63	34	11	13	40	1.81
18460428--18460459	16	1.9	17	93	6	57	31	18	0	50	1.48
18460851--18460900	3	17.3	3	79	8	59	66	4	0	30	1.10
18460851--18460897	18	2.7	18	87	6	71	65	4	0	29	1.11
18461397--18461434	18	2.1	18	100	0	76	28	15	5	50	1.66
18464806--18464852	21	2.2	21	84	0	58	29	27	10	31	1.90
18468815--18468849	18	1.9	18	88	11	54	60	8	2	28	1.41
18469357--18469587	82	2.8	82	96	2	419	38	23	20	17	1.93
18470448--18470850	43	9.3	43	81	6	388	24	1	30	43	1.62
18470819--18470878	27	2.2	28	85	8	79	23	0	35	41	1.55
18470455--18470850	21	18.4	21	79	6	391	24	1	30	43	1.62
18470820--18470878	14	4.3	14	72	14	52	23	0	33	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18471137--18471183	21	2.2	21	85	7	60	8	19	34	38	1.82
18471430--18471464	18	1.9	18	88	0	52	42	8	28	20	1.81
18472085--18472110	7	3.7	7	100	0	52	57	15	0	26	1.38
18473201--18473298	51	1.9	51	87	4	144	45	3	24	26	1.67
18473260--18473336	11	6.9	11	73	24	72	44	1	28	25	1.62
18473260--18473336	22	3.5	22	83	16	97	44	1	28	25	1.62
18473260--18473336	33	2.3	33	82	10	102	44	1	28	25	1.62
18476991--18477041	21	2.5	20	84	12	59	35	1	1	60	1.19
18477474--18477520	19	2.6	18	87	9	69	68	0	0	31	0.90
18481141--18481303	81	2.0	81	97	0	308	35	9	17	37	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145