genome.fa.s2.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  135  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44982970--44983044	26	2.9	26	83	0	87	22	17	20	40	1.92
44985437--44985471	16	2.2	16	100	0	70	22	5	0	71	1.07
44986141--44986242	3	34.0	3	97	0	195	33	0	32	34	1.58
44986762--44987013	123	2.1	122	88	4	375	15	19	27	38	1.91
44991982--44992320	169	2.0	170	99	0	671	34	24	7	32	1.85
44994561--44994757	107	1.8	107	88	0	304	27	27	15	29	1.96
44998589--44998646	26	2.2	26	84	3	71	22	20	15	41	1.90
44998686--44999032	27	12.9	27	82	2	403	19	17	21	41	1.91
45006722--45006787	34	1.9	34	84	3	87	25	25	18	30	1.98
45012023--45012052	2	15.0	2	100	0	60	0	50	0	50	1.00
45015606--45015646	21	2.0	21	85	0	55	56	4	7	31	1.48
45016183--45016238	22	2.5	22	83	8	69	44	16	3	35	1.65
45016196--45016293	19	4.8	19	81	9	97	39	14	7	38	1.73
45016230--45016292	21	3.1	21	86	9	94	39	11	7	41	1.70
45016963--45017007	24	1.9	23	81	4	54	28	8	11	51	1.68
45019981--45020024	23	1.9	23	85	0	61	61	6	4	27	1.41
45020228--45020287	31	1.9	31	90	6	95	25	10	6	58	1.55
45021113--45021144	3	10.7	3	100	0	64	34	0	31	34	1.58
45023829--45023863	14	2.5	14	95	0	61	48	0	0	51	1.00
45023795--45023862	21	3.0	21	83	10	73	50	1	0	48	1.10
45030849--45030923	27	2.8	27	87	4	116	25	25	29	20	1.99
45031347--45031416	27	2.6	27	90	4	106	21	31	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45034363--45034430	31	2.2	31	86	0	100	39	5	17	36	1.74
45039373--45039897	258	2.0	261	88	2	779	29	18	23	28	1.98
45043969--45044010	19	2.1	20	82	8	50	30	7	4	57	1.47
45044455--45044664	104	2.0	105	98	0	404	37	10	0	50	1.44
45058477--45058544	18	3.7	18	76	20	52	51	0	0	48	1.00
45058495--45058544	19	2.6	20	76	20	61	48	0	0	52	1.00
45059521--45059603	27	3.1	27	83	0	112	24	24	30	21	1.99
45059897--45060009	33	3.5	33	90	1	156	25	12	45	16	1.83
45061261--45061309	23	2.1	23	96	0	89	22	28	28	20	1.98
45062096--45062137	22	2.0	22	90	4	68	64	2	0	33	1.07
45062432--45062464	3	11.3	3	87	6	50	0	30	0	69	0.88
45062548--45062610	20	3.2	20	90	0	90	44	20	23	11	1.83
45063005--45063033	14	2.0	15	93	6	51	31	6	0	62	1.22
45064593--45064623	15	2.1	15	93	0	53	64	6	0	29	1.18
45082836--45082879	20	2.2	21	84	8	56	22	2	9	65	1.32
45082982--45083310	90	3.7	86	76	10	231	57	13	3	24	1.54
45083213--45083359	48	3.2	48	65	21	132	55	12	4	27	1.56
45083158--45083386	90	2.5	91	93	2	392	57	12	4	25	1.53
45084069--45084163	45	2.1	44	92	5	156	31	7	5	55	1.50
45084454--45084505	27	1.9	27	88	0	77	15	25	34	25	1.95
45085176--45085256	27	3.0	27	70	0	72	28	25	23	22	1.99
45086082--45086163	31	2.6	31	88	0	119	52	15	3	28	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45086425--45086479	26	2.1	27	86	10	78	23	32	5	38	1.78
45088394--45088534	77	1.9	77	89	3	223	33	14	11	40	1.82
45088471--45088994	217	2.5	209	85	6	655	33	16	14	35	1.89
45088471--45088994	107	4.9	105	84	7	630	33	16	14	35	1.89
45089504--45089556	16	3.3	16	72	0	52	32	24	5	37	1.79
45099417--45099673	44	5.8	44	87	2	347	29	17	24	28	1.97
45099549--45099938	44	8.9	43	70	6	169	27	21	25	26	1.99
45099417--45099707	132	2.2	132	82	4	338	30	17	23	28	1.97
45099644--45099944	87	3.4	87	81	2	379	26	21	25	25	2.00
45099644--45099982	175	1.9	175	89	1	527	26	22	25	25	2.00
45099644--45099982	87	3.9	87	78	8	330	26	22	25	25	2.00
45099642--45100028	175	2.2	176	85	3	514	27	21	25	25	2.00
45099987--45100072	44	2.0	44	92	0	145	29	15	25	30	1.96
45099987--45100088	44	2.3	44	88	3	143	27	17	23	31	1.97
45109918--45109950	16	2.1	16	88	5	50	18	15	21	45	1.85
45109943--45110048	40	2.7	40	82	2	124	39	19	16	23	1.92
45110079--45110239	41	4.0	41	81	4	200	20	16	32	30	1.94
45110391--45110446	27	2.1	27	83	6	71	12	35	7	44	1.70
45114577--45114635	18	3.3	18	63	13	50	42	6	10	40	1.65
45114836--45115081	43	5.8	43	88	1	336	19	20	33	26	1.96
45116313--45116350	20	1.9	20	88	0	58	42	0	7	50	1.31
45117462--45117493	5	6.6	5	96	3	57	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45119328--45119368	20	2.1	19	86	4	55	43	2	2	51	1.28
45119957--45120002	24	2.0	24	83	12	60	65	0	2	32	1.05
45121998--45122574	285	2.0	287	84	7	749	33	12	17	37	1.87
45127428--45127460	15	2.2	15	94	0	57	0	24	0	75	0.80
45129007--45129059	22	2.4	22	78	9	54	62	7	1	28	1.33
45133562--45133694	26	5.3	25	71	11	76	38	21	21	18	1.94
45133622--45133676	26	2.2	25	93	3	92	41	21	21	14	1.89
45136293--45136404	42	2.7	42	87	5	172	22	16	31	29	1.96
45141481--45141525	8	5.6	8	100	0	90	86	0	0	13	0.57
45142443--45142472	6	5.0	6	100	0	60	33	50	0	16	1.46
45149258--45149301	23	1.9	23	81	9	54	27	4	9	59	1.48
45149421--45149473	24	2.2	24	100	0	106	35	9	7	47	1.64
45154796--45154859	13	4.9	13	92	0	101	26	9	25	39	1.86
45191644--45191678	6	6.0	6	90	3	54	34	45	2	17	1.63
45195103--45195201	49	2.0	49	100	0	198	27	20	16	36	1.93
45219691--45219782	40	2.3	40	90	0	139	20	31	16	31	1.95
45220504--45220561	27	2.1	27	84	6	73	48	5	20	25	1.70
45228103--45228158	28	2.0	28	82	6	69	50	1	7	41	1.40
45237048--45237074	8	3.4	8	100	0	54	88	0	0	11	0.50
45237775--45237934	83	1.9	83	84	2	214	20	24	25	30	1.99
45237858--45238224	69	5.3	69	81	4	382	19	23	24	31	1.98
45237860--45238206	138	2.5	138	83	5	423	19	23	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45238840--45239008	85	2.0	85	100	0	338	43	22	10	23	1.84
45249354--45249403	3	16.3	3	87	4	73	64	2	2	32	1.16
45252876--45253017	6	23.7	6	73	5	81	19	42	1	36	1.60
45252876--45253012	18	7.6	18	81	0	139	20	42	1	35	1.61
45253626--45253677	19	2.6	21	82	11	65	26	3	1	67	1.18
45253626--45253669	20	2.2	20	88	8	63	27	4	0	68	1.09
45253884--45254364	105	4.6	105	99	0	953	30	9	4	55	1.51
45254310--45254396	39	2.3	38	80	9	97	33	3	2	60	1.26
45254343--45254385	20	2.2	20	87	8	61	27	4	0	67	1.10
45254451--45254491	18	2.3	18	84	12	50	29	2	2	65	1.18
45255198--45255239	17	2.4	17	81	14	50	80	4	0	14	0.86
45255243--45255282	21	2.0	21	86	13	59	47	5	0	47	1.24
45259568--45259609	20	2.2	20	86	4	59	28	7	0	64	1.20
45259535--45259608	38	1.9	38	86	5	105	35	5	1	58	1.30
45259626--45259697	29	2.5	26	76	20	72	23	4	8	63	1.39
45261449--45261483	12	2.8	12	91	4	52	71	0	25	2	1.00
45262231--45262272	20	2.2	20	86	4	59	28	7	0	64	1.20
45262198--45262271	38	1.9	38	86	5	105	35	5	1	58	1.30
45262289--45262360	29	2.5	26	76	20	72	23	4	8	63	1.39
45269246--45269301	3	19.0	3	96	3	105	66	0	0	33	0.92
45270815--45270946	6	22.0	6	77	0	111	18	45	3	32	1.65
45270815--45270886	30	2.4	30	97	0	135	16	43	4	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45279712--45280000	103	2.7	103	91	4	454	32	8	3	55	1.47
45280134--45280183	26	1.9	26	83	0	64	34	0	4	62	1.14
45283153--45283251	39	2.5	39	80	11	121	20	3	29	47	1.65
45289205--45289243	20	2.0	20	85	10	53	23	15	0	61	1.33
45292494--45292541	22	2.1	22	84	3	60	62	10	2	25	1.38
45292508--45292610	54	1.9	53	86	2	143	56	12	1	29	1.47
45294779--45294823	23	2.0	23	86	0	63	22	6	6	64	1.41
45299575--45299604	2	15.0	2	100	0	60	50	50	0	0	1.00
45306876--45306992	61	2.0	61	93	5	204	26	10	16	47	1.78
45311357--45311538	90	2.0	90	96	0	337	34	15	17	32	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145