genome.fa.s2.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  55  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17861017--17861071	26	2.2	25	83	6	67	45	12	3	38	1.60
17865317--17865355	20	2.0	20	100	0	78	35	25	33	5	1.78
17865660--17865718	20	2.9	19	90	5	73	44	23	22	10	1.83
17866393--17866567	85	2.0	86	97	2	334	44	20	5	29	1.75
17866615--17866646	17	1.9	16	93	6	55	40	6	0	53	1.26
17872630--17872663	10	3.6	9	88	11	50	29	0	11	58	1.33
17873340--17873614	120	2.3	123	94	3	477	29	16	20	34	1.94
17880727--17880756	14	2.1	14	93	6	51	66	6	0	26	1.16
17880849--17880911	29	2.2	29	91	0	99	65	0	0	34	0.93
17880945--17880995	22	2.3	21	90	9	84	35	0	35	29	1.58
17880967--17881024	30	1.9	30	92	0	98	37	0	32	29	1.58
17880944--17881046	52	2.0	52	94	0	179	37	0	32	30	1.58
17880997--17881046	22	2.3	23	89	6	77	42	0	30	28	1.56
17881465--17881503	20	2.1	19	85	9	53	61	0	12	25	1.31
17885869--17886043	45	3.9	45	87	3	235	18	22	22	36	1.95
17886771--17886866	47	2.0	48	90	8	151	43	12	13	30	1.81
17888735--17888927	94	2.1	94	98	0	377	41	17	16	24	1.89
17890685--17890718	12	2.8	12	90	0	50	5	14	0	79	0.91
17892450--17892482	2	17.0	2	93	6	59	51	0	0	48	1.00
17893768--17893808	2	20.5	2	94	0	73	2	0	46	51	1.14
17894157--17894218	24	2.6	23	84	7	70	50	3	0	46	1.17
17894855--17894896	11	3.4	12	81	15	50	38	2	0	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17895039--17895077	14	2.8	14	84	0	51	43	10	15	30	1.80
17913319--17913513	106	1.8	106	85	2	275	38	18	17	25	1.92
17914799--17915449	112	5.7	114	81	6	757	23	21	26	28	1.99
17914796--17915449	229	2.9	225	84	6	863	24	21	26	28	1.99
17915670--17915729	31	1.9	32	89	3	95	18	1	43	36	1.60
17940755--17940823	21	3.3	21	91	4	113	37	20	40	1	1.61
17940788--17940836	12	4.3	12	75	15	59	36	22	40	0	1.54
17941358--17941561	42	4.9	42	92	0	345	24	20	22	33	1.97
17945712--17945742	11	2.8	11	95	0	53	41	0	19	38	1.51
17949085--17949117	16	2.1	16	88	11	50	30	18	3	48	1.63
17955679--17955772	42	2.2	43	84	1	127	32	27	14	24	1.95
17957113--17957152	20	2.0	20	100	0	80	55	5	0	40	1.22
17967367--17967654	43	6.7	43	92	2	429	23	32	20	23	1.98
17967367--17967672	128	2.4	128	87	3	438	23	32	20	23	1.98
17967367--17967654	85	3.4	86	91	1	438	23	32	20	23	1.98
17973690--17973726	15	2.5	15	95	0	65	54	18	10	16	1.71
17974799--17974831	14	2.3	15	89	5	50	39	30	0	30	1.57
17975477--17975739	41	6.4	41	86	3	343	32	27	22	17	1.96
17975477--17975721	123	2.0	122	90	2	384	31	28	22	17	1.97
17976293--17976323	15	2.1	14	94	5	53	41	9	6	41	1.63
17977227--17977266	20	2.0	20	90	0	62	37	2	2	57	1.26
17977243--17977597	174	2.0	175	98	1	694	45	6	6	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17978049--17978152	52	2.0	52	82	0	127	29	25	16	27	1.97
17980726--17980776	27	1.9	26	84	11	68	54	11	9	23	1.66
17983887--17984026	40	3.5	40	78	8	153	31	25	17	25	1.97
17986615--17986656	16	2.5	17	85	14	61	30	2	4	61	1.29
17987170--17987196	5	5.4	5	100	0	54	62	0	0	37	0.95
17990303--17990476	87	2.0	87	97	0	330	26	14	16	42	1.87
17991977--17992043	32	2.1	33	82	2	82	25	2	23	47	1.66
17991469--17992293	411	2.0	410	94	0	1463	28	10	18	42	1.84
17993436--17993486	23	2.3	23	96	3	95	56	3	13	25	1.54
17996165--17996202	9	4.4	9	83	12	53	73	0	0	26	0.83
17996188--17996212	13	1.9	13	100	0	50	72	0	0	28	0.86
17997584--17997629	18	2.6	17	82	3	56	80	4	6	8	1.01
18000424--18000497	32	2.3	32	97	0	139	44	18	5	31	1.73
18000580--18000657	27	2.9	27	74	11	79	41	25	14	19	1.89
18009669--18009798	51	2.5	51	78	2	145	27	15	28	28	1.96
18010126--18010206	37	2.1	38	86	4	110	44	2	22	30	1.66
18013946--18014004	6	9.8	6	88	0	73	57	0	40	1	1.09
18027906--18027952	19	2.5	20	80	13	55	46	0	34	19	1.50
18029840--18029912	36	2.0	36	100	0	146	39	13	10	35	1.80
18037411--18037441	11	2.8	11	95	0	53	41	12	9	35	1.76
18051498--18051600	35	3.0	35	78	8	95	33	18	24	24	1.97
18064100--18064188	14	6.4	14	72	14	78	53	13	8	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18064140--18064198	28	2.1	28	100	0	118	54	13	10	22	1.69
18065774--18065807	17	2.0	17	88	0	50	47	5	14	32	1.69
18067447--18067491	21	2.1	21	91	0	72	42	24	8	24	1.83
18069722--18069749	14	2.0	14	100	0	56	35	28	14	21	1.92
18070986--18071055	36	1.9	36	88	5	106	34	35	8	21	1.84
18073566--18073646	25	3.2	25	75	0	90	27	22	22	28	1.99
18075361--18075461	35	2.9	35	84	1	130	36	14	24	23	1.93
18082804--18083156	176	2.0	172	91	4	575	24	13	3	58	1.50
18083743--18083778	19	1.9	19	88	5	56	22	11	5	61	1.50
18087394--18087892	211	2.4	211	83	2	615	44	10	14	30	1.79
18090166--18090257	46	2.0	46	91	4	152	25	5	31	38	1.78
18090166--18090272	46	2.5	44	83	10	125	27	5	30	36	1.80
18091420--18091453	12	2.8	12	100	0	68	61	14	23	0	1.33
18093504--18093539	17	2.1	17	100	0	72	58	0	41	0	0.98
18094320--18094371	3	17.7	3	92	7	81	30	0	1	67	1.02
18096880--18097007	67	1.9	67	95	0	229	28	34	16	20	1.94
18101223--18101289	32	2.0	33	91	5	109	26	5	10	56	1.56
18107055--18107248	97	2.0	97	87	0	280	31	15	14	37	1.88
18108445--18108691	50	4.8	50	79	8	223	27	23	27	21	1.99
18110077--18110837	105	7.1	105	76	7	575	31	16	14	37	1.89
18110320--18110540	118	1.9	118	84	3	302	30	14	16	38	1.88
18110492--18110767	106	2.6	105	81	2	302	32	15	12	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18112329--18112405	31	2.5	30	85	10	102	19	19	18	42	1.89
18112634--18112732	53	1.9	49	86	11	137	60	3	3	33	1.27
18113368--18113464	50	2.0	49	95	2	176	26	14	14	44	1.84
18114443--18114512	32	2.3	31	87	9	99	21	10	20	48	1.78
18115022--18115062	10	4.2	10	76	17	50	29	0	2	68	1.03
18117832--18117875	23	1.9	23	90	0	70	61	4	2	31	1.28
18117836--18117878	11	3.8	11	80	17	52	65	2	2	30	1.18
18119575--18119639	27	2.4	27	73	12	62	23	20	15	41	1.89
18120376--18120400	13	1.9	13	100	0	50	16	28	0	56	1.41
18121517--18121581	27	2.4	27	73	12	62	23	20	15	41	1.89
18122475--18122499	13	1.9	13	100	0	50	16	28	0	56	1.41
18123616--18123680	27	2.4	27	73	12	62	23	20	15	41	1.89
18124574--18124598	13	1.9	13	100	0	50	16	28	0	56	1.41
18125715--18125779	27	2.4	27	73	12	62	23	20	15	41	1.89
18126673--18126697	13	1.9	13	100	0	50	16	28	0	56	1.41
18129157--18129203	14	3.5	13	80	8	51	31	0	0	68	0.90
18131609--18131651	21	2.0	21	100	0	86	37	9	9	44	1.69
18138287--18138329	21	2.1	20	91	4	68	53	0	2	44	1.13
18138316--18138353	20	1.9	20	84	10	51	65	0	2	31	1.06
18141816--18141863	17	2.8	17	78	12	53	27	33	14	25	1.94
18141651--18141907	125	2.1	125	94	0	453	30	23	15	30	1.95
18141854--18141966	17	6.6	17	69	1	64	23	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18155585--18155642	13	4.2	13	74	20	55	22	5	0	72	1.04
18155590--18155649	22	2.9	21	85	11	72	21	6	0	71	1.08
18155584--18155641	12	5.2	11	79	20	59	20	5	0	74	1.01
18155585--18155648	7	9.3	7	75	20	55	21	6	0	71	1.07
18158834--18159081	85	2.9	85	90	1	363	32	22	15	29	1.95
18159587--18159779	28	6.8	27	76	12	147	55	7	11	25	1.61
18159622--18159776	57	2.7	55	78	13	163	54	7	10	27	1.61
18159639--18159778	57	2.5	57	82	9	171	54	7	12	26	1.63
18159918--18159948	12	2.6	12	94	0	53	9	16	48	25	1.76
18163175--18163209	17	2.0	17	88	5	52	48	2	0	48	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145