genome.fa.s2.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  49  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15944206--15944239	18	1.9	18	88	5	52	38	2	2	55	1.30
15951167--15951311	41	3.6	41	77	7	134	21	28	16	33	1.95
15956274--15956299	13	2.0	13	100	0	52	15	30	7	46	1.74
15965197--15965247	25	2.0	25	100	0	102	31	23	0	45	1.53
15965616--15965673	23	2.5	23	88	5	73	43	22	17	17	1.88
15965626--15965673	23	2.1	23	96	0	87	39	20	18	20	1.92
15966185--15966209	11	2.3	11	100	0	50	28	20	0	52	1.47
15970556--15970619	24	2.6	25	83	11	80	39	6	4	50	1.49
15974421--15974508	6	14.7	6	100	0	176	15	17	0	67	1.24
15977082--15977124	22	2.0	22	86	8	63	34	4	13	46	1.65
15985245--15985316	31	2.4	29	80	13	76	38	2	12	45	1.56
15988939--15988985	23	2.0	23	91	0	76	34	0	6	59	1.23
15988945--15988990	23	2.0	23	91	0	74	32	0	10	56	1.34
15989307--15989361	16	3.4	16	85	9	76	29	23	7	40	1.81
15998381--15998409	6	4.8	6	100	0	58	17	0	82	0	0.66
16019163--16019202	19	2.1	19	85	0	53	35	2	7	55	1.42
16020962--16020999	18	2.1	19	90	5	60	55	0	23	21	1.44
16020964--16021031	19	3.6	19	78	2	66	52	0	22	25	1.47
16030570--16030713	45	3.3	42	72	12	137	30	18	17	34	1.94
16030587--16030742	45	3.5	45	80	3	188	28	17	19	33	1.95
16032557--16032722	91	1.8	91	81	0	206	36	19	10	32	1.87
16033237--16033282	9	5.1	9	94	0	83	45	13	10	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16033318--16033360	21	2.0	21	82	8	52	23	37	0	39	1.55
16034642--16034695	23	2.3	23	74	0	54	38	1	9	50	1.45
16034678--16034762	44	2.0	43	90	4	136	34	11	8	45	1.70
16053616--16053670	23	2.2	25	87	12	78	67	3	5	23	1.28
16055125--16055158	17	2.0	17	88	0	50	35	0	0	64	0.94
16055133--16055194	32	2.0	31	87	9	90	40	1	0	58	1.08
16056985--16057239	33	7.4	33	70	19	171	34	27	18	19	1.95
16056981--16057271	102	2.8	102	88	4	413	33	28	17	19	1.95
16058445--16058500	25	2.2	25	96	0	103	53	7	10	28	1.62
16064866--16064963	48	2.0	48	98	0	169	47	25	4	22	1.68
16065752--16065849	41	2.2	44	81	12	105	33	23	14	28	1.94
16076138--16076189	25	2.0	26	85	3	70	42	13	3	40	1.62
16076171--16076356	96	1.9	96	85	2	257	33	15	12	38	1.86
16076445--16076477	17	2.0	17	88	5	50	48	0	0	51	1.00
16077708--16077739	15	2.1	15	94	0	55	62	9	12	15	1.54
16087457--16087489	16	2.1	16	94	0	57	21	33	6	39	1.78
16088603--16088628	7	3.7	7	100	0	52	11	0	0	88	0.52
16088870--16089278	18	22.7	18	91	0	575	22	8	28	40	1.84
16088870--16089278	45	9.1	45	100	0	818	22	8	28	40	1.84
16090912--16090958	24	2.0	24	83	8	60	34	31	8	25	1.86
16102150--16102177	2	14.0	2	100	0	56	50	0	0	50	1.00
16105459--16105500	6	7.0	6	81	7	50	45	2	19	33	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16105899--16106076	23	8.1	23	75	8	138	20	20	21	37	1.94
16105944--16106061	21	5.5	21	75	9	103	17	23	22	35	1.95
16105899--16106074	66	2.7	66	84	4	223	20	20	21	37	1.94
16110985--16111155	45	3.8	45	84	1	193	28	15	22	32	1.95
16110983--16111155	90	1.9	88	87	2	247	28	15	22	32	1.95
16115367--16115425	15	3.8	16	72	16	52	37	3	18	40	1.68
16116305--16116332	13	2.2	13	100	0	56	71	0	14	14	1.15
16117363--16117415	23	2.2	25	83	6	65	13	30	20	35	1.91
16117493--16117575	25	3.3	25	80	6	105	20	22	19	37	1.94
16127160--16127225	33	2.0	33	91	2	107	33	6	22	37	1.79
16128364--16128832	238	2.0	236	86	2	663	29	12	18	39	1.87
16135604--16135643	21	2.0	20	85	9	55	45	0	0	55	0.99
16135871--16135918	5	9.4	5	83	2	51	54	22	16	6	1.65
16135876--16135918	15	2.9	15	89	0	68	53	20	18	6	1.67
16137102--16137163	24	2.6	24	92	0	97	22	11	24	41	1.86
16137938--16137968	5	6.2	5	100	0	62	22	19	19	38	1.93
16142039--16142072	18	1.9	18	88	5	52	47	14	5	32	1.69
16143283--16143352	33	2.2	33	82	7	90	54	4	20	21	1.61
16147057--16147098	16	2.7	16	88	3	59	45	11	7	35	1.69
16153857--16153896	18	2.2	19	91	8	66	25	5	0	70	1.08
16153859--16153897	17	2.3	17	86	8	53	28	5	0	66	1.12
16176578--16176641	17	3.8	17	71	17	53	39	0	3	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16184033--16184095	23	2.7	24	79	16	87	52	22	7	17	1.70
16184009--16184292	107	2.7	106	86	3	398	44	23	7	25	1.79
16188151--16188181	16	1.9	16	93	0	53	9	9	9	70	1.33
16189793--16189870	37	2.1	39	83	9	99	46	6	2	44	1.42
16192777--16192818	14	3.0	14	80	19	52	35	0	2	61	1.09
16197687--16197806	25	4.8	26	73	13	85	32	19	26	21	1.97
16197688--16197806	50	2.4	49	82	10	127	32	18	26	21	1.97
16197741--16197806	24	2.7	25	79	11	82	33	21	27	18	1.96
16197740--16197817	24	3.2	24	76	8	77	33	19	29	17	1.95
16197804--16197867	25	2.6	25	84	0	83	39	20	23	17	1.92
16205656--16205722	25	2.7	26	88	2	93	32	20	20	25	1.97
16205668--16205747	25	3.2	25	87	0	106	30	22	25	22	1.99
16205757--16205818	25	2.5	24	82	7	70	43	16	19	20	1.88
16208684--16208760	40	1.9	41	81	7	95	45	9	2	42	1.49
16221178--16221207	14	2.1	14	93	0	51	40	0	43	16	1.48
16223232--16223264	13	2.5	13	90	0	57	15	48	24	12	1.78
16224156--16224364	41	5.1	41	77	4	208	34	15	26	22	1.94
16224156--16224365	81	2.6	82	78	7	221	35	15	26	22	1.94
16228541--16228936	198	2.0	198	98	0	765	26	23	21	28	1.99
16233691--16233891	100	2.0	100	86	0	276	28	9	22	38	1.86
16240774--16240798	13	1.9	13	100	0	50	24	52	8	16	1.70
16244131--16244185	26	2.1	26	93	0	92	40	14	29	16	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16248165--16248219	26	2.1	27	89	3	85	56	36	0	7	1.27
16252750--16252811	26	2.4	26	94	0	106	29	11	16	43	1.82
16252956--16252996	6	6.8	6	88	0	55	17	24	0	58	1.38
16252958--16252997	18	2.2	18	90	4	62	15	22	0	62	1.32
16259587--16259725	32	4.4	32	81	0	154	38	19	20	21	1.94
16259883--16259979	48	2.0	48	88	4	142	48	21	6	23	1.73
16259871--16259979	24	4.5	24	83	0	110	47	22	6	23	1.74
16260017--16260289	27	10.1	27	79	9	290	21	17	20	39	1.92
16260017--16260301	81	3.5	81	90	3	407	21	17	20	40	1.91
16260269--16260506	54	4.4	54	84	2	273	24	18	16	39	1.91
16260269--16260506	81	2.9	80	77	5	239	24	18	16	39	1.91
16260267--16260515	27	9.2	27	79	6	213	24	18	16	39	1.91
16263319--16263354	18	1.9	19	88	5	56	75	2	2	19	1.06
16275625--16275707	41	2.0	41	90	0	130	42	20	8	28	1.81
16276942--16276973	15	2.1	15	94	0	55	50	0	12	37	1.41
16277623--16277739	24	4.8	23	73	12	74	17	22	23	36	1.94
16277613--16277702	24	3.6	25	76	5	85	15	23	24	36	1.94
16277623--16277762	73	1.9	72	83	9	178	17	22	24	36	1.94
16289533--16289561	13	2.2	13	100	0	58	34	13	0	51	1.42
16294418--16294564	50	2.9	49	80	5	168	23	29	23	23	1.99
16296249--16296286	19	2.0	19	100	0	76	42	21	0	36	1.53
16301959--16302107	50	2.8	51	84	10	169	25	30	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16311302--16311373	36	2.0	36	91	0	117	23	22	19	34	1.96
16312678--16312735	29	2.0	29	100	0	116	41	13	13	31	1.84
16317405--16317440	13	2.9	12	88	8	54	16	2	2	77	1.00
16318428--16318466	20	2.0	20	94	0	69	30	10	7	51	1.64
16318432--16318480	20	2.5	20	86	3	64	26	12	12	48	1.75
16323852--16323883	12	2.7	12	95	0	55	46	3	0	50	1.17
16326372--16326439	25	2.7	26	86	9	95	42	8	2	45	1.50
16327058--16327097	14	2.6	16	80	11	57	42	7	5	45	1.54
16327519--16327570	19	2.7	19	84	3	59	44	9	1	44	1.48
16327789--16327849	29	2.1	28	81	3	68	24	14	16	44	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145