genome.fa.s2.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  129  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43151478--43151536	27	2.2	27	87	6	84	40	35	22	1	1.64
43156263--43156323	28	2.2	28	87	0	86	32	11	14	40	1.82
43156963--43157041	34	2.4	33	91	4	124	35	8	30	25	1.86
43157111--43157163	22	2.3	24	74	6	56	33	1	18	45	1.61
43162783--43162830	22	2.2	21	85	3	60	18	37	16	27	1.92
43167118--43167153	16	2.3	15	95	4	63	16	8	0	75	1.04
43180301--43180354	20	2.7	20	97	0	99	53	3	22	20	1.61
43185963--43185990	14	2.0	14	100	0	56	21	14	35	28	1.92
43200468--43200607	76	1.9	75	80	4	165	35	20	25	17	1.95
43209905--43210053	42	3.6	41	76	6	147	34	26	16	22	1.95
43210030--43210079	26	1.9	26	91	0	82	28	32	16	24	1.96
43210056--43210202	41	3.6	41	91	0	240	21	25	21	32	1.98
43211812--43211839	13	2.2	13	100	0	56	35	14	17	32	1.90
43217954--43217998	20	2.2	20	92	0	72	26	26	15	31	1.96
43228077--43228106	15	1.9	16	93	6	53	66	0	20	13	1.24
43237657--43237719	30	2.3	26	78	21	83	15	14	1	68	1.29
43237665--43237729	30	2.2	30	100	0	130	16	13	3	66	1.38
43249861--43249897	20	1.9	20	88	5	58	35	29	18	16	1.93
43250762--43250798	5	7.6	5	87	6	58	81	0	0	18	0.70
43253890--43253922	17	1.9	17	88	11	50	48	12	0	39	1.40
43266576--43266974	199	2.0	200	99	0	791	38	15	12	34	1.85
43267546--43267588	11	3.8	11	84	3	50	6	18	48	25	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43272343--43272407	33	2.0	33	93	0	112	33	9	13	43	1.76
43273851--43273891	10	4.1	10	87	6	57	80	7	2	9	0.99
43273851--43273891	11	4.0	11	84	12	52	80	7	2	9	0.99
43274864--43274915	18	2.9	18	91	0	77	73	1	19	5	1.14
43274882--43274933	24	2.2	24	89	0	77	69	5	19	5	1.30
43274862--43274915	6	9.0	6	81	0	63	74	1	18	5	1.11
43274862--43274957	42	2.3	42	85	0	120	67	4	20	7	1.32
43279908--43279969	27	2.3	27	83	2	81	16	17	22	43	1.87
43290702--43290773	33	2.4	30	75	20	78	55	4	4	36	1.38
43300838--43300862	11	2.3	11	100	0	50	44	0	0	56	0.99
43301725--43301786	28	2.2	28	86	8	83	25	1	17	54	1.52
43302605--43302885	139	2.0	140	99	0	555	37	3	8	50	1.50
43304336--43304758	210	2.0	210	93	1	724	30	14	27	27	1.95
43309653--43309696	23	2.0	23	90	4	72	36	4	9	50	1.55
43309698--43309845	74	2.0	74	94	0	260	24	6	22	47	1.74
43309915--43310006	45	2.0	45	87	4	132	40	14	14	31	1.85
43309925--43310006	24	3.5	24	74	12	82	42	14	9	32	1.79
43316043--43316194	50	2.9	51	86	5	180	21	30	22	26	1.99
43318795--43318942	74	2.0	74	90	0	233	27	5	20	47	1.72
43328926--43328992	13	5.2	13	90	0	107	25	28	31	14	1.95
43330545--43330676	50	2.6	51	81	3	167	34	15	12	37	1.86
43330804--43330912	53	2.1	53	98	0	209	31	5	12	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43330811--43330895	26	3.2	26	67	9	82	31	5	12	49	1.65
43331352--43331427	36	2.1	36	97	0	143	48	7	15	27	1.73
43332915--43332971	21	2.8	20	76	5	62	64	0	22	12	1.26
43332933--43332971	20	2.1	19	86	13	55	66	0	23	10	1.22
43334198--43334236	12	3.2	12	85	0	51	20	23	5	51	1.67
43335013--43335071	30	2.0	30	86	0	82	32	23	8	35	1.85
43345568--43345594	14	1.9	14	100	0	54	37	0	3	59	1.15
43351458--43351489	3	10.7	3	100	0	64	31	34	0	34	1.58
43354394--43354474	40	2.0	41	80	7	94	13	14	27	44	1.83
43358549--43358688	49	2.8	50	78	5	167	32	24	16	27	1.96
43386032--43386060	13	2.1	14	93	6	51	68	13	6	10	1.37
43391616--43391644	12	2.4	12	100	0	58	62	10	13	13	1.55
43410162--43410951	394	2.0	394	100	0	1580	24	8	23	43	1.81
43411440--43411469	12	2.5	12	94	0	51	23	40	30	6	1.80
43432250--43432487	50	4.6	50	86	4	280	21	30	22	26	1.99
43432249--43432498	100	2.4	104	86	6	330	21	29	22	26	1.99
43435772--43435864	43	2.2	43	82	0	105	19	24	31	24	1.98
43439334--43439624	40	7.3	40	83	3	336	46	26	13	13	1.81
43439335--43439625	120	2.4	120	83	1	370	46	26	14	13	1.81
43440556--43440598	21	2.0	21	90	0	68	27	6	4	60	1.43
43442558--43442602	24	1.9	23	86	4	63	11	13	8	66	1.44
43442573--43442625	16	3.3	16	75	0	52	11	18	9	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43446256--43446293	8	4.8	8	90	0	58	2	15	21	60	1.47
43451036--43451242	41	5.0	41	84	0	243	19	28	16	35	1.94
43451035--43451095	21	3.0	20	70	13	61	16	32	18	32	1.93
43451090--43451157	21	3.3	21	65	19	61	19	33	16	30	1.93
43456814--43457450	318	2.0	319	99	0	1267	39	11	17	30	1.86
43457689--43457804	30	3.9	30	82	0	142	30	23	24	22	1.99
43457945--43458039	26	3.7	26	76	0	100	44	21	16	17	1.87
43457924--43458039	52	2.2	52	87	3	171	43	20	18	18	1.89
43458267--43458347	27	3.0	27	87	0	117	22	17	23	37	1.94
43458275--43458358	27	3.1	26	76	10	80	22	17	23	35	1.95
43459573--43459615	21	2.0	21	95	0	77	44	20	4	30	1.72
43459622--43459688	20	3.3	20	64	12	55	14	35	17	31	1.91
43459602--43459871	41	6.6	41	84	1	326	22	29	14	32	1.94
43459602--43459875	82	3.3	82	84	2	370	22	28	14	33	1.94
43462479--43462522	23	1.9	22	82	17	54	36	25	0	38	1.56
43462567--43462655	45	2.0	45	93	0	151	33	24	16	24	1.96
43478736--43478779	19	2.3	19	100	0	88	31	4	27	36	1.77
43485282--43485315	15	2.3	15	89	0	50	50	0	5	44	1.26
43485217--43485361	72	2.0	73	98	1	283	48	2	2	45	1.31
43486364--43486522	79	2.0	79	97	0	300	43	12	15	28	1.83
43489876--43489914	10	4.0	10	86	6	62	25	0	10	64	1.25
43490596--43490652	21	2.7	21	81	10	62	29	8	3	57	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43497654--43497697	23	1.9	23	82	17	56	56	20	0	22	1.42
43499124--43499199	30	2.6	29	81	6	82	22	25	11	40	1.88
43499186--43499249	29	2.2	29	85	0	92	25	25	12	37	1.91
43512053--43512168	61	1.9	59	81	11	139	49	3	5	42	1.42
43514528--43514552	12	2.1	12	100	0	50	24	8	0	68	1.16
43521273--43521338	29	2.2	29	83	5	78	50	10	0	39	1.37
43521328--43521360	15	2.2	15	94	0	57	66	0	0	33	0.92
43522108--43522178	2	35.5	2	100	0	142	49	0	0	50	1.00
43535124--43535175	25	2.1	25	96	0	95	30	7	21	40	1.81
43549628--43549678	22	2.3	23	80	10	61	37	25	7	29	1.84
43559673--43561448	709	2.5	709	94	0	3133	31	12	20	34	1.91
43561871--43565944	708	5.7	709	95	0	7127	31	13	21	33	1.92
43567571--43567600	12	2.5	12	94	0	51	30	40	23	6	1.80
43573450--43573569	25	4.8	25	82	10	122	29	23	18	29	1.98
43573452--43573569	50	2.4	50	85	5	166	28	23	17	29	1.97
43589746--43589806	31	2.0	31	100	0	122	42	14	9	32	1.79
43599767--43599868	40	2.6	38	82	3	123	48	5	4	41	1.49
43602735--43603031	50	5.8	50	82	3	292	22	28	20	27	1.99
43606717--43606759	19	2.3	19	100	0	86	37	27	9	25	1.87
43608923--43608972	16	3.4	16	68	21	54	46	16	12	26	1.81
43608923--43608981	28	2.1	28	100	0	118	45	15	13	25	1.82
43609194--43609244	18	2.7	20	71	20	54	31	19	7	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43617749--43617998	27	9.3	27	84	1	286	38	23	17	20	1.93
43617950--43618031	27	3.0	27	82	10	80	36	18	17	28	1.93
43618363--43619282	28	32.9	28	91	0	1475	18	19	26	35	1.95
43618365--43619282	56	16.4	56	97	1	1709	18	19	26	35	1.95
43623882--43623954	27	2.7	27	93	0	119	39	26	12	21	1.89
43623883--43624224	54	6.1	54	79	10	285	38	23	16	20	1.93
43623975--43624224	27	9.3	27	84	1	286	38	23	17	20	1.93
43623866--43624049	92	2.0	92	100	0	368	38	26	14	21	1.91
43624176--43624257	27	3.0	27	82	10	80	36	18	17	28	1.93
43624589--43624808	28	7.9	28	87	4	300	20	20	25	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145