genome.fa.s2.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  17  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5538378--5538412	5	6.6	5	96	3	52	42	0	0	57	0.99
5546995--5547114	44	2.7	44	82	7	138	31	20	21	25	1.98
5549743--5549849	45	2.4	45	82	6	144	44	17	14	22	1.86
5551067--5551176	42	2.6	43	81	7	125	27	18	23	30	1.97
5551028--5551176	42	3.5	42	81	8	122	26	18	26	29	1.98
5551027--5551184	43	3.7	42	81	7	167	25	17	27	29	1.98
5555908--5555959	22	2.4	22	87	9	79	30	32	0	36	1.58
5555997--5556058	29	2.1	29	85	5	81	43	0	1	54	1.09
5555995--5556050	29	1.9	29	89	7	87	42	0	1	55	1.10
5556149--5556182	15	2.3	15	90	5	52	26	0	5	67	1.13
5558158--5558413	29	8.9	29	99	0	496	44	20	0	33	1.55
5558910--5559004	29	3.2	29	86	1	127	45	23	2	29	1.64
5560933--5560966	16	2.1	16	88	0	50	52	11	0	35	1.38
5566227--5566382	77	2.0	79	97	2	298	35	7	5	51	1.53
5571541--5571584	19	2.3	18	84	7	52	29	18	4	47	1.68
5577304--5577498	94	2.1	95	84	5	254	32	19	20	27	1.97
5577304--5577520	94	2.3	94	80	9	239	31	19	20	28	1.97
5577451--5577609	44	3.6	43	76	12	153	32	19	18	28	1.96
5578338--5578370	17	1.9	17	100	0	66	30	0	3	66	1.06
5586431--5586721	151	1.9	151	87	0	429	27	29	17	26	1.97
5587814--5587852	2	19.5	2	89	0	60	0	5	43	51	1.24
5589797--5589851	20	2.5	23	85	11	80	38	3	5	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5589956--5590010	20	2.5	23	85	11	80	38	3	5	52	1.42
5589741--5590062	159	2.0	160	99	0	637	30	6	8	54	1.56
5591211--5591258	24	2.0	24	100	0	96	41	8	0	50	1.33
5592851--5592876	13	2.0	13	100	0	52	30	38	23	7	1.83
5594366--5594399	8	4.0	9	88	11	54	76	0	0	23	0.79
5594365--5594399	17	2.1	17	89	5	54	74	0	0	25	0.82
5596212--5596267	22	2.4	23	77	16	62	51	1	7	39	1.40
5596726--5596775	15	3.3	15	81	13	50	66	2	2	30	1.14
5598220--5599615	44	31.9	44	70	16	585	26	23	19	30	1.98
5598138--5599578	87	16.5	88	85	5	938	26	23	19	30	1.98
5598137--5599567	174	8.2	176	93	2	1808	26	23	19	30	1.98
5598149--5599567	261	5.4	259	86	4	1721	26	23	19	30	1.98
5599658--5600090	87	5.0	87	89	0	562	27	25	19	28	1.98
5599834--5599969	42	3.2	42	62	17	98	27	26	16	29	1.97
5602191--5602234	6	7.0	6	90	10	70	0	18	0	81	0.68
5602191--5602234	13	3.5	12	90	9	70	0	18	0	81	0.68
5602259--5602303	9	5.2	8	80	15	54	13	0	4	82	0.82
5602251--5602305	19	2.9	18	83	5	74	12	0	5	81	0.84
5604173--5604215	19	2.3	17	78	21	50	41	13	23	20	1.88
5606258--5606313	22	2.4	23	77	16	62	51	1	7	39	1.40
5606772--5606821	15	3.3	15	81	13	50	66	2	2	30	1.14
5608798--5608835	15	2.5	15	95	0	67	5	18	7	68	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5612044--5612078	6	5.5	6	87	12	52	14	14	14	57	1.66
5612043--5612078	13	2.8	13	100	0	72	13	13	13	58	1.64
5612043--5612079	7	5.6	7	87	12	60	13	13	13	59	1.62
5614836--5614875	18	2.2	18	86	8	55	12	17	5	65	1.44
5615786--5615827	21	2.0	21	86	9	59	73	0	11	14	1.09
5617084--5618451	397	3.5	395	82	9	1546	28	19	23	28	1.98
5617084--5617935	132	6.4	132	86	2	1147	28	19	24	28	1.98
5617832--5618042	107	2.0	107	92	0	350	28	18	24	28	1.98
5617696--5618174	239	2.0	239	88	1	719	29	18	23	28	1.98
5617935--5618451	132	3.9	132	88	3	752	28	19	23	28	1.98
5617935--5618442	268	1.9	264	90	3	804	29	19	23	28	1.98
5618466--5618579	44	2.6	44	91	0	183	31	14	24	28	1.95
5621710--5621766	25	2.3	25	84	0	69	40	12	5	42	1.65
5622157--5622240	23	3.5	22	78	12	78	29	19	26	25	1.98
5634925--5635019	21	4.8	21	72	10	67	62	0	3	34	1.11
5634987--5635036	19	2.6	19	77	0	55	62	0	4	34	1.14
5634858--5635362	245	2.1	245	100	0	1010	45	11	9	33	1.71
5635170--5635264	21	4.8	21	72	10	67	62	0	3	34	1.11
5635232--5635281	19	2.6	19	77	0	55	62	0	4	34	1.14
5635462--5635517	9	6.0	9	83	4	58	30	3	0	66	1.09
5644052--5644083	14	2.3	14	100	0	64	31	46	15	6	1.71
5645557--5645634	29	2.7	27	75	18	77	73	6	8	11	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5650220--5650315	19	4.6	22	79	11	71	41	15	5	37	1.70
5650216--5650359	57	2.5	55	85	10	150	41	14	6	37	1.71
5650233--5650366	19	6.8	19	86	3	169	40	14	7	37	1.75
5650249--5650366	57	2.1	55	93	3	200	38	15	7	38	1.76
5650675--5650800	44	2.9	44	89	0	207	29	25	16	28	1.97
5651099--5651574	132	3.6	132	93	1	803	30	23	18	28	1.97
5658196--5658531	42	7.9	42	76	11	310	18	27	33	20	1.96
5658212--5658495	85	3.4	84	81	8	337	18	27	33	20	1.96
5658741--5658813	24	3.0	24	86	7	103	9	38	32	19	1.84
5659184--5659285	43	2.4	43	86	0	141	20	33	29	16	1.95
5666487--5666616	42	3.0	43	80	9	142	18	25	33	23	1.97
5666731--5666820	42	2.1	43	87	6	130	20	26	33	20	1.97
5667029--5667102	24	3.1	24	84	0	94	8	40	32	18	1.80
5667192--5668131	43	22.1	42	70	5	318	16	30	33	19	1.94
5667111--5667980	85	10.2	85	81	3	953	17	31	32	18	1.94
5667111--5668065	256	3.7	256	82	3	1127	17	31	33	18	1.94
5667111--5667980	341	2.5	337	83	5	1111	17	31	32	18	1.94
5667111--5668105	85	11.7	84	80	3	929	17	31	33	18	1.94
5667229--5668206	213	4.6	212	77	5	693	16	30	33	18	1.94
5667140--5668209	128	8.4	128	75	6	506	17	30	33	18	1.94
5668262--5668520	43	6.1	44	75	5	185	13	29	37	19	1.90
5668289--5668489	85	2.4	85	79	2	215	13	26	38	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5674879--5674956	24	3.2	24	85	0	102	8	41	32	17	1.81
5674962--5675212	43	5.9	43	76	3	193	17	31	33	17	1.94
5675022--5675212	86	2.2	86	82	1	213	18	31	32	16	1.93
5675142--5675224	43	1.9	43	85	4	114	13	33	36	16	1.88
5679063--5679131	25	2.8	25	91	2	86	27	31	8	31	1.87
5683338--5683754	77	5.4	77	100	0	834	31	15	30	22	1.95
5693010--5693054	22	2.1	21	87	4	63	64	4	4	26	1.32
5693110--5693169	30	2.0	30	84	12	79	75	3	3	18	1.09
5693113--5693171	28	2.1	28	81	9	68	76	3	3	16	1.06
5693734--5693791	19	3.1	19	87	0	71	37	13	6	41	1.72
5694363--5694496	19	6.7	21	78	10	77	40	14	6	38	1.72
5694363--5694420	22	2.6	22	81	7	64	41	17	5	36	1.72
5694399--5694509	19	5.8	19	89	0	177	37	13	9	39	1.76
5694399--5694502	38	2.7	38	98	0	199	38	12	8	40	1.74
5695810--5695875	24	2.7	23	81	9	69	46	4	9	39	1.56
5695865--5695911	24	2.0	24	87	8	69	61	0	6	31	1.21
5696886--5696925	21	1.9	21	94	0	71	25	15	17	42	1.88
5697102--5697805	44	15.9	44	79	5	422	32	23	13	30	1.93
5697102--5697805	88	8.0	88	83	4	783	32	23	13	30	1.93
5697104--5697809	177	4.0	177	83	3	868	32	23	13	30	1.93
5699064--5699113	14	3.6	14	79	15	59	12	22	0	66	1.24
5699066--5699113	21	2.3	21	85	7	62	12	20	0	66	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5703924--5704001	34	2.3	33	82	2	102	55	3	6	34	1.44
5704089--5704151	29	2.2	28	85	5	81	23	14	15	46	1.83
5704156--5704244	42	2.2	41	78	9	92	25	28	24	21	1.99
5705146--5705184	17	2.5	15	80	15	51	51	2	2	43	1.29
5705148--5705215	24	2.8	23	82	8	73	47	4	8	39	1.55
5705205--5705251	24	2.0	24	87	8	69	61	0	6	31	1.21
5708753--5708777	12	2.1	12	100	0	50	24	8	24	44	1.80
5720917--5720962	22	2.1	22	88	8	67	34	2	0	63	1.07
5721287--5721336	22	2.3	22	96	0	91	28	34	0	38	1.57
5721308--5721366	30	2.0	30	96	0	109	28	35	0	35	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145