genome.fa.s2.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  95  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31721284--31721438	30	5.2	30	82	6	165	31	23	3	41	1.71
31721300--31721444	59	2.4	58	87	6	202	30	24	4	40	1.74
31721942--31722009	4	18.5	4	80	17	69	75	0	25	0	0.81
31721958--31722008	10	5.2	10	76	21	54	76	0	23	0	0.79
31721941--31722003	26	2.4	26	89	5	92	73	0	26	0	0.84
31721941--31722027	26	3.2	26	77	11	86	74	0	24	1	0.88
31721962--31722038	14	5.4	14	73	16	59	79	0	18	2	0.85
31721954--31722030	6	12.3	6	77	9	66	77	0	20	1	0.83
31722294--31722339	13	3.6	13	88	2	67	80	0	19	0	0.71
31722294--31722338	10	4.1	11	84	15	58	80	0	20	0	0.72
31722486--31722528	17	2.6	17	81	3	52	30	2	0	67	1.03
31722638--31722681	20	2.2	19	84	8	52	63	9	2	25	1.35
31722694--31722733	21	1.9	21	90	10	64	20	15	15	50	1.79
31722694--31722738	21	2.1	21	84	8	56	28	13	13	44	1.81
31722885--31723279	35	11.2	34	71	14	221	30	11	12	45	1.77
31722881--31723075	72	2.7	73	81	12	194	33	11	10	44	1.76
31722874--31723279	17	22.8	18	69	13	252	31	11	11	45	1.77
31723094--31723263	55	3.2	53	74	9	130	28	11	12	46	1.78
31723214--31723289	17	4.5	17	81	4	73	31	10	13	44	1.77
31724041--31724092	25	2.1	26	82	13	65	46	23	0	30	1.53
31725759--31725796	15	2.6	15	95	4	69	0	26	0	73	0.83
31725760--31725796	5	7.6	5	82	17	51	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31726779--31726871	43	2.2	43	88	3	134	21	34	26	17	1.95
31727924--31728343	210	2.0	211	99	0	824	37	18	13	30	1.89
31729577--31729610	17	2.0	17	88	0	50	44	14	14	26	1.84
31737680--31737741	11	5.6	11	82	3	72	22	30	1	45	1.62
31737679--31737755	22	3.5	22	79	12	86	24	28	1	45	1.61
31737679--31737755	11	6.9	11	76	14	70	24	28	1	45	1.61
31737717--31737814	51	1.9	51	85	4	135	25	24	3	46	1.67
31738957--31738988	7	4.6	7	100	0	64	28	0	12	59	1.34
31739608--31739647	18	2.2	18	86	0	53	17	30	7	45	1.76
31740191--31740457	43	5.8	47	78	16	219	42	34	0	22	1.57
31740220--31740901	43	16.1	42	77	13	591	44	31	0	22	1.59
31740327--31740372	13	3.4	13	78	21	58	41	36	0	21	1.54
31740329--31740383	28	2.0	28	96	0	101	41	36	0	21	1.54
31740332--31740381	15	3.5	15	76	20	61	42	36	0	22	1.54
31740555--31740634	35	2.3	36	82	10	103	47	33	1	17	1.56
31740524--31740888	99	3.6	99	91	5	538	45	32	1	21	1.59
31740654--31740733	35	2.3	36	82	10	103	47	33	1	17	1.56
31740220--31740901	21	32.2	22	77	11	580	44	31	0	22	1.59
31740220--31740901	64	10.7	64	75	14	610	44	31	0	22	1.59
31740966--31741029	30	2.1	31	94	2	112	40	10	12	35	1.78
31743667--31744233	126	4.5	125	85	2	744	29	23	16	30	1.96
31743667--31744233	251	2.3	250	87	2	771	29	23	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31746296--31746328	17	1.9	17	100	0	66	36	0	3	60	1.12
31751268--31751382	19	5.6	22	81	9	70	40	16	6	37	1.73
31751304--31751395	19	4.8	19	91	0	157	36	16	8	38	1.79
31751281--31751395	38	2.9	38	90	5	176	38	16	7	37	1.78
31752011--31754823	100	28.0	100	93	1	4536	25	23	20	30	1.99
31752011--31754823	201	14.0	200	93	0	4536	25	23	20	30	1.99
31754749--31755141	167	2.3	166	83	2	455	27	26	18	27	1.98
31755138--31755348	44	5.0	44	80	11	226	30	25	16	27	1.97
31755194--31755260	34	2.0	34	90	0	107	26	25	20	26	1.99
31755150--31755302	78	2.0	78	86	0	216	30	24	18	26	1.98
31756715--31756747	15	2.1	16	94	5	59	0	15	0	84	0.61
31761708--31761761	19	2.8	19	94	0	99	37	16	9	37	1.81
31761685--31761761	38	1.9	40	87	10	113	38	16	7	36	1.78
31761971--31762014	22	2.0	22	95	0	79	43	9	11	36	1.72
31763937--31764012	38	2.0	39	94	2	136	19	27	30	22	1.98
31770452--31770508	25	2.3	24	82	8	71	33	17	21	28	1.96
31770426--31770545	25	4.9	24	71	10	66	33	16	23	26	1.96
31779516--31779547	12	2.4	14	90	10	50	65	3	0	31	1.08
31779529--31779575	6	7.5	6	81	9	58	74	0	0	25	0.82
31779530--31779584	20	2.8	20	86	5	76	72	1	0	25	0.94
31780365--31780466	51	2.0	51	98	0	195	44	13	10	31	1.79
31782499--31782557	22	2.7	22	75	0	55	16	15	13	54	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31782566--31782606	18	2.2	20	87	12	61	24	4	4	65	1.32
31783771--31783810	3	12.7	3	89	10	62	65	0	5	30	1.14
31785276--31785309	16	2.1	16	88	0	50	47	0	0	52	1.00
31785493--31785526	16	2.1	16	88	0	50	47	0	0	52	1.00
31785226--31785664	217	2.0	218	99	0	871	43	7	8	41	1.63
31786864--31786909	24	1.9	24	90	0	74	10	45	6	36	1.65
31786932--31786961	14	2.1	14	93	0	51	10	43	10	36	1.72
31788263--31788308	23	1.9	24	82	8	58	52	13	4	30	1.59
31796989--31797035	20	2.4	20	85	3	60	46	0	6	46	1.28
31798068--31798126	30	2.0	30	93	0	100	40	5	28	25	1.77
31798590--31798922	50	6.6	50	82	3	373	30	15	25	29	1.96
31798590--31798922	102	3.3	101	86	3	377	30	15	25	29	1.96
31801996--31802035	20	2.0	21	85	5	55	57	0	5	37	1.21
31802091--31802162	19	4.0	18	84	12	78	45	1	0	52	1.09
31802114--31802162	8	5.9	8	79	9	53	48	0	0	51	1.00
31802105--31802162	8	6.7	9	73	15	50	48	0	0	51	1.00
31830853--31830938	45	1.9	45	83	4	111	40	3	22	33	1.71
31830942--31831015	6	12.2	6	84	7	78	59	0	24	16	1.37
31830943--31831015	12	6.5	12	77	19	86	58	0	24	16	1.38
31830942--31831015	18	4.1	18	87	1	103	59	0	24	16	1.37
31841188--31841217	2	15.0	2	100	0	60	50	0	0	50	1.00
31843190--31843220	16	2.0	15	93	6	53	58	25	3	12	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31858069--31858127	27	2.2	27	81	0	64	50	5	8	35	1.55
31859219--31859261	22	2.0	22	81	9	52	13	4	34	46	1.65
31859638--31859976	44	7.8	44	72	8	253	28	22	18	29	1.98
31862297--31862374	29	2.8	28	82	5	86	10	6	10	73	1.26
31862297--31862384	29	2.9	28	75	20	72	10	5	10	73	1.23
31866888--31866914	8	3.4	8	100	0	54	51	11	0	37	1.37
31867217--31867247	12	2.6	12	100	0	62	74	6	6	12	1.21
31867981--31868023	6	7.2	6	97	0	59	83	6	9	0	0.80
31874842--31874895	16	3.7	15	72	16	51	59	0	1	38	1.08
31874839--31874904	27	2.4	27	85	7	80	60	0	3	36	1.12
31878930--31879356	84	5.0	86	81	5	413	44	10	11	33	1.75
31879021--31879334	171	1.9	168	85	3	441	45	9	10	34	1.71
31879388--31879569	79	2.3	79	86	0	256	39	15	14	30	1.87
31880318--31880347	10	2.9	10	95	5	51	60	0	10	30	1.30
31880670--31880710	21	2.1	19	86	9	55	58	24	4	12	1.53
31882108--31882137	10	2.9	10	95	5	51	60	0	10	30	1.30
31882460--31882500	21	2.1	19	86	9	55	58	24	4	12	1.53
31884416--31884449	10	3.4	10	92	8	52	0	26	0	73	0.83
31884417--31884449	14	2.5	13	86	13	50	0	24	0	75	0.80
31888686--31888732	23	2.0	23	91	0	76	27	29	12	29	1.93
31901111--31901423	96	3.4	95	73	10	324	31	19	15	32	1.93
31901157--31901768	45	13.6	45	67	14	181	30	21	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31900887--31901724	318	2.7	318	86	1	1125	29	20	17	32	1.95
31901213--31901556	137	2.5	137	83	1	458	32	19	16	31	1.94
31901430--31901737	96	3.3	96	74	11	352	29	21	18	30	1.97
31901384--31901740	181	2.0	181	93	0	606	29	20	18	31	1.96
31909304--31909338	17	2.1	17	94	0	61	5	34	31	28	1.81
31914362--31914437	6	12.7	6	74	0	62	59	7	3	28	1.44
31914362--31914437	12	6.3	12	81	0	80	59	7	3	28	1.44
31914362--31914437	24	3.2	24	82	0	89	59	7	3	28	1.44
31916350--31916431	34	2.4	34	87	0	110	40	26	13	19	1.89
31918716--31918746	15	2.1	15	100	0	62	22	32	6	38	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145