genome.fa.s2.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  38  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12175342--12175414	25	3.0	25	85	2	103	41	19	24	15	1.89
12179366--12179441	28	2.7	28	87	0	107	36	13	14	35	1.85
12186072--12186102	2	15.5	2	100	0	62	51	0	48	0	1.00
12187738--12187781	20	2.2	20	87	0	61	54	15	9	20	1.68
12187930--12187974	20	2.2	20	84	0	54	57	8	11	22	1.60
12188510--12188606	20	4.9	20	75	9	83	57	7	16	18	1.61
12193391--12193453	32	2.0	32	100	0	126	12	28	14	44	1.82
12197379--12197418	2	20.0	2	100	0	80	50	0	0	50	1.00
12197823--12197882	30	2.0	29	81	15	70	58	3	5	33	1.36
12198288--12198340	19	2.8	19	78	18	65	58	1	0	39	1.09
12199243--12199285	11	3.9	11	75	0	50	18	18	9	53	1.70
12199320--12199381	29	2.1	30	90	3	99	24	1	16	58	1.47
12199427--12199475	16	3.1	16	87	0	80	38	8	34	18	1.80
12208285--12208342	30	1.9	30	83	13	75	51	15	0	32	1.44
12210455--12210510	28	2.0	28	92	0	94	53	12	10	23	1.69
12215996--12216093	50	2.0	50	84	8	128	37	19	26	16	1.92
12216024--12216125	50	2.0	50	83	3	125	38	19	25	16	1.92
12215999--12216133	25	5.4	25	76	5	96	35	20	26	17	1.95
12218977--12219042	24	2.7	24	83	2	78	31	22	30	15	1.95
12219617--12219677	29	2.1	29	100	0	122	52	16	13	18	1.75
12221579--12221613	18	2.0	18	88	5	54	51	14	0	34	1.42
12231634--12231685	22	2.5	22	84	12	65	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12237387--12237424	19	2.1	18	85	9	51	36	7	7	47	1.62
12243865--12243908	4	11.5	4	85	9	56	45	25	4	25	1.72
12244328--12244380	27	1.9	26	88	11	79	79	7	13	0	0.93
12244324--12244379	14	3.6	15	74	23	53	80	8	10	0	0.91
12244333--12244375	22	1.9	23	85	4	61	76	9	13	0	1.01
12248966--12249438	235	2.0	237	98	0	923	21	16	15	46	1.84
12251835--12251974	45	3.1	45	75	13	153	36	12	18	32	1.89
12255747--12255788	21	2.0	21	81	9	50	30	0	2	66	1.04
12255985--12256015	16	1.9	16	93	0	53	70	0	0	29	0.87
12258314--12258624	107	2.9	107	87	0	435	33	18	18	29	1.95
12259018--12259057	3	13.7	3	94	5	73	70	0	0	30	0.88
12259849--12259900	24	2.3	23	83	12	63	73	5	11	9	1.25
12259850--12259900	22	2.2	22	82	10	57	74	3	11	9	1.19
12261341--12261376	17	2.1	18	89	5	56	33	19	5	41	1.75
12292380--12292419	21	1.9	21	84	0	53	27	7	5	60	1.45
12299189--12299329	47	3.0	47	83	5	187	33	27	14	24	1.94
12300602--12300670	22	3.1	22	82	0	75	43	17	20	18	1.88
12300664--12300701	19	2.0	19	94	0	67	34	15	28	21	1.94
12300650--12300778	25	5.4	25	85	10	189	36	19	24	19	1.95
12306000--12306072	21	3.5	21	94	0	128	35	28	6	28	1.83
12312889--12312942	21	2.6	21	75	0	63	24	25	29	20	1.99
12313500--12313556	21	2.7	21	80	0	60	22	31	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12316133--12316166	13	2.5	13	85	4	50	17	17	14	50	1.79
12321420--12321457	11	3.5	11	85	0	58	47	0	0	52	1.00
12322268--12322461	93	2.1	94	98	0	372	35	3	4	57	1.34
12322831--12322884	19	2.8	19	91	0	90	37	11	16	35	1.84
12322831--12322907	38	1.9	40	87	10	113	37	9	15	37	1.79
12324899--12324951	24	2.2	24	86	0	70	5	18	39	35	1.75
12325173--12325509	168	2.0	169	97	0	631	47	13	5	32	1.67
12327427--12327456	15	2.0	15	93	0	51	36	26	6	30	1.82
12327511--12327561	26	2.1	26	85	10	72	25	23	3	47	1.69
12327778--12327920	50	2.8	50	84	3	198	30	29	18	20	1.97
12332422--12332719	124	2.4	123	87	6	426	28	17	7	46	1.76
12333705--12333751	2	23.5	2	100	0	94	51	48	0	0	1.00
12349107--12349189	40	2.0	41	93	2	141	37	13	9	39	1.77
12350107--12350150	24	1.9	22	95	4	70	18	20	13	47	1.82
12350114--12350168	24	2.3	24	84	6	67	21	20	14	43	1.87
12351528--12351571	15	2.9	15	83	6	52	18	2	2	77	0.98
12352883--12352926	15	2.9	15	83	6	52	18	2	2	77	0.98
12353801--12353886	34	2.5	34	79	3	93	31	8	4	55	1.49
12355419--12355972	277	2.0	276	96	0	1009	35	14	25	24	1.94
12360297--12361080	88	8.9	88	87	0	985	26	24	26	22	2.00
12360297--12360777	44	11.0	42	65	8	188	25	23	27	24	2.00
12361096--12361323	44	5.2	44	73	5	185	25	20	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12361094--12361334	131	1.8	130	85	4	324	25	20	24	29	1.99
12362201--12362244	15	2.9	15	83	6	52	18	2	2	77	0.98
12362979--12363030	3	17.3	3	76	7	52	28	0	5	65	1.16
12362975--12363030	24	2.3	24	84	6	69	28	0	7	64	1.20
12362979--12363032	18	3.1	17	83	5	63	29	0	5	64	1.16
12363123--12363208	34	2.5	34	79	3	93	31	8	4	55	1.49
12364537--12364625	23	4.0	22	73	17	78	17	7	22	51	1.71
12364531--12364760	107	2.1	107	95	0	415	25	6	23	44	1.77
12369136--12369170	18	2.0	17	88	5	52	45	0	0	54	0.99
12369384--12369416	16	2.1	16	100	0	66	21	36	6	36	1.78
12375434--12375466	16	2.1	16	100	0	66	27	18	18	36	1.94
12382744--12382892	74	2.0	75	98	1	291	40	21	10	26	1.86
12388298--12388466	43	4.0	43	80	13	215	30	28	18	21	1.97
12388298--12388455	84	1.9	84	87	7	232	29	29	19	21	1.98
12393813--12393912	51	2.0	50	84	5	130	23	18	28	31	1.97
12397400--12397439	2	19.5	2	94	5	71	47	2	0	50	1.14
12403169--12403272	52	2.0	52	100	0	208	30	9	19	40	1.83
12406220--12406307	36	2.4	36	92	3	151	18	25	34	22	1.96
12410529--12410695	41	4.1	41	100	0	334	39	11	19	29	1.87
12415007--12415066	22	2.7	22	81	2	75	20	16	18	45	1.86
12415692--12415747	29	1.9	29	92	0	94	30	1	28	39	1.67
12440946--12440991	20	2.3	20	96	0	83	23	26	32	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12443668--12443721	21	2.8	18	75	13	54	44	12	3	38	1.61
12443944--12443988	23	2.0	24	86	8	67	42	8	2	46	1.47
12444234--12444270	18	2.1	18	100	0	74	32	5	5	56	1.45
12444801--12444895	42	2.3	42	94	0	163	37	21	18	22	1.94
12452503--12452687	101	1.8	102	89	3	293	25	16	26	31	1.97
12452503--12452685	51	3.6	49	75	9	154	25	16	26	31	1.97
12452913--12452944	16	2.0	16	93	0	55	59	0	15	25	1.36
12455159--12455446	153	1.9	153	90	1	463	42	11	3	43	1.58
12460375--12460440	34	1.9	34	90	3	105	42	19	7	30	1.79
12467896--12467926	12	2.6	12	94	0	53	0	41	0	58	0.98
12470304--12470389	26	3.2	26	83	6	118	41	11	19	26	1.86
12470304--12470388	28	3.1	27	86	3	118	41	11	20	27	1.87
12473912--12473948	18	2.1	18	100	0	74	27	10	27	35	1.90
12476030--12476125	43	2.3	43	88	1	140	16	25	17	40	1.90
12476043--12476118	21	3.5	22	68	12	68	13	23	21	42	1.88
12476018--12476125	21	5.1	21	66	10	67	17	24	17	40	1.90
12477116--12477212	28	3.2	29	73	13	88	25	22	24	26	2.00
12477543--12477791	27	9.3	27	79	11	185	18	19	20	41	1.90
12477545--12477791	54	4.6	54	85	2	311	18	19	20	42	1.90
12477548--12477787	81	3.0	80	85	3	313	18	19	20	42	1.90
12483918--12484155	27	8.9	27	80	2	223	18	16	21	43	1.88
12483934--12484155	81	2.8	81	83	2	279	18	16	21	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12487926--12488025	36	2.7	36	75	9	94	44	20	16	20	1.87
12494181--12494462	140	2.0	141	99	0	557	36	17	4	41	1.69
12497186--12497238	28	2.0	27	88	7	81	26	39	5	28	1.79
12502304--12502339	15	2.5	14	91	8	63	50	0	5	44	1.25
12509125--12509196	20	3.7	20	74	10	67	72	2	2	22	1.11
12512201--12512247	23	2.0	23	87	0	67	46	21	6	25	1.74
12513262--12513329	28	2.4	29	87	7	104	20	16	5	57	1.60
12515140--12515177	20	1.9	20	84	10	51	31	5	0	63	1.17
12518621--12518714	47	2.0	47	87	0	134	24	19	25	30	1.98
12518607--12519059	50	9.1	50	73	7	329	23	20	24	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145