genome.fa.s2.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  97  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32344156--32344213	29	2.0	29	96	0	107	37	0	29	32	1.58
32344868--32344914	25	1.9	25	86	4	69	19	21	19	40	1.92
32344972--32345072	26	3.9	25	85	5	103	16	22	19	40	1.91
32351391--32351438	24	2.0	24	100	0	96	41	12	16	29	1.85
32353308--32353495	81	2.3	82	84	5	240	37	14	28	19	1.92
32353308--32353495	41	4.6	41	85	4	231	37	14	28	19	1.92
32353374--32353437	20	3.2	20	64	4	56	39	15	31	14	1.87
32355073--32355126	27	2.0	27	100	0	108	37	11	25	25	1.89
32361646--32361672	12	2.2	12	100	0	54	29	7	7	55	1.55
32363305--32363335	14	2.3	13	94	5	53	45	6	0	48	1.28
32363414--32363465	26	2.0	26	100	0	104	23	15	7	53	1.67
32366081--32366112	16	2.0	16	100	0	64	25	6	18	50	1.70
32370857--32370913	28	2.0	28	83	12	73	17	1	3	77	1.00
32370856--32370909	15	3.4	16	80	12	58	16	1	3	77	1.00
32377750--32377786	9	4.1	9	92	0	65	29	10	13	45	1.77
32380058--32380172	27	4.3	27	79	7	128	31	13	20	34	1.91
32383835--32383859	13	1.9	13	100	0	50	40	48	0	12	1.40
32387906--32387980	31	2.4	31	80	8	82	36	13	13	37	1.84
32387976--32388030	18	3.1	17	76	10	56	38	3	0	58	1.16
32387989--32388030	18	2.4	17	88	8	57	33	2	0	64	1.07
32399527--32399573	12	3.9	12	91	0	76	10	17	19	53	1.72
32401406--32401469	27	2.4	28	80	15	73	62	0	6	31	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32403008--32403043	13	2.6	14	86	8	56	38	0	8	52	1.32
32404707--32404770	33	1.9	34	84	9	87	34	21	9	34	1.86
32413621--32413681	25	2.6	23	78	5	59	59	9	3	27	1.45
32413843--32413934	6	14.8	6	72	10	60	60	3	7	28	1.39
32413864--32413919	21	2.7	21	83	5	60	60	3	10	25	1.45
32413938--32413972	4	9.0	4	93	6	63	77	0	0	22	0.78
32418575--32418745	86	2.0	86	89	2	263	40	15	12	31	1.85
32422741--32422828	46	1.9	46	88	0	131	36	18	21	23	1.95
32423001--32423052	22	2.4	22	80	0	59	44	15	19	21	1.87
32423044--32423185	32	4.5	32	73	9	112	40	17	20	21	1.92
32423058--32423182	64	2.0	64	87	3	180	39	16	20	23	1.92
32423352--32423409	24	2.4	24	91	0	89	48	27	6	17	1.72
32423390--32423438	24	2.0	24	88	0	71	42	26	8	22	1.81
32423455--32423705	27	9.4	27	84	2	265	23	21	19	34	1.96
32423455--32423701	53	4.6	54	81	3	241	23	21	20	34	1.96
32423455--32423701	80	3.1	80	82	1	262	23	21	20	34	1.96
32423455--32423706	107	2.4	106	83	3	301	23	21	19	34	1.96
32423693--32423839	27	5.4	27	87	3	206	25	19	16	39	1.91
32423671--32423839	54	3.1	54	84	5	164	25	19	16	38	1.92
32425723--32425775	21	2.5	21	90	0	88	33	18	18	28	1.95
32425936--32425969	15	2.3	15	89	0	50	29	17	20	32	1.96
32426215--32426269	3	18.0	3	96	3	101	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32429013--32429436	150	2.8	150	97	1	823	32	6	7	53	1.55
32430226--32431042	151	5.4	152	91	3	1278	53	7	8	31	1.57
32430226--32431042	301	2.7	301	90	2	1284	53	7	8	31	1.57
32431036--32431085	14	3.7	14	75	20	52	26	0	8	66	1.19
32431597--32432186	150	4.0	150	88	6	896	51	7	9	31	1.63
32432983--32433027	11	4.1	11	79	0	54	22	28	0	48	1.50
32432981--32433043	22	2.9	22	85	4	74	23	28	0	47	1.52
32432983--32433045	33	1.9	33	87	6	92	25	28	0	46	1.53
32433005--32433104	51	2.0	51	85	0	137	26	26	1	47	1.59
32435363--32435480	49	2.4	49	98	0	227	45	2	9	42	1.49
32440786--32440911	44	2.8	45	71	4	112	26	26	19	26	1.99
32440786--32440958	88	2.0	88	89	0	265	25	26	20	28	1.99
32442194--32442249	14	3.9	14	78	17	69	14	12	0	73	1.11
32442216--32442245	11	2.8	11	95	5	53	16	16	0	66	1.25
32442697--32442743	21	2.2	20	85	7	58	0	10	10	78	0.96
32442703--32442765	20	3.3	19	79	14	58	0	15	6	77	0.96
32450943--32450984	23	1.9	22	85	9	59	47	0	2	50	1.14
32451931--32452170	119	2.0	120	99	0	473	40	4	8	47	1.53
32456795--32456835	21	2.0	21	85	0	55	46	0	34	19	1.50
32461745--32461850	52	2.0	52	98	0	203	36	5	22	34	1.78
32466353--32466378	5	5.2	5	100	0	52	19	0	0	80	0.71
32466498--32466528	6	5.0	6	96	4	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32466496--32466528	12	2.6	13	90	9	59	48	0	0	51	1.00
32467003--32467054	16	3.2	16	81	10	70	34	0	34	30	1.58
32467268--32467320	16	3.4	15	79	7	52	52	1	0	45	1.11
32467175--32468093	155	5.9	155	99	0	1811	44	3	4	47	1.39
32467423--32467475	16	3.4	15	79	7	52	52	1	0	45	1.11
32467578--32467630	16	3.4	15	79	7	52	52	1	0	45	1.11
32467733--32467785	16	3.4	15	79	7	52	52	1	0	45	1.11
32467888--32467940	16	3.4	15	79	7	52	52	1	0	45	1.11
32480823--32480851	9	3.0	10	90	10	51	51	0	0	48	1.00
32482626--32482655	16	1.9	15	93	6	51	46	20	0	33	1.51
32485982--32486041	17	3.6	16	71	10	50	1	18	5	75	1.07
32488998--32489843	422	2.0	423	94	0	1480	34	19	16	29	1.94
32493310--32493369	29	2.0	30	87	3	86	0	23	5	71	1.05
32493403--32493468	7	8.6	7	78	18	53	53	1	1	43	1.19
32493400--32493465	8	8.4	8	70	21	50	51	1	1	45	1.19
32493400--32493468	27	2.5	26	76	23	79	52	1	1	44	1.19
32495615--32495656	21	2.1	19	83	16	50	42	0	14	42	1.45
32496487--32496537	22	2.3	23	83	9	63	52	1	5	39	1.37
32499514--32499551	19	2.0	20	85	15	53	34	0	7	57	1.28
32506489--32506517	13	2.1	14	93	6	51	27	6	6	58	1.50
32508388--32508658	135	2.0	134	95	0	488	42	8	12	37	1.72
32514271--32514317	16	2.9	16	78	15	53	31	0	6	61	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32515334--32515387	28	1.9	28	92	0	90	29	35	3	31	1.75
32515450--32515543	46	2.1	45	95	2	170	22	18	5	54	1.63
32519633--32519661	14	2.0	15	93	6	51	62	0	10	27	1.28
32529383--32529414	16	1.9	17	93	6	57	37	21	0	40	1.54
32529574--32529687	41	2.7	42	81	9	126	30	28	17	22	1.97
32529576--32529734	84	1.9	84	82	10	200	31	28	17	22	1.96
32529576--32529731	43	3.7	42	74	14	151	30	29	17	22	1.97
32531459--32531493	15	2.4	15	95	4	63	28	5	14	51	1.65
32542166--32542201	15	2.4	15	95	0	63	30	8	25	36	1.85
32547006--32547055	22	2.3	22	89	0	82	38	8	28	26	1.84
32560597--32560677	26	3.1	25	79	10	74	16	18	22	43	1.88
32560657--32560797	24	5.8	24	72	9	81	19	27	21	31	1.97
32560617--32560810	24	7.9	23	70	13	79	18	25	22	34	1.96
32571114--32571148	16	2.2	16	89	0	52	37	28	20	14	1.91
32575136--32575225	39	2.3	39	98	0	171	30	16	15	37	1.90
32577149--32577307	28	5.7	28	90	0	210	33	25	20	19	1.96
32577425--32577500	26	2.9	26	90	0	107	36	26	21	15	1.93
32577638--32577700	27	2.3	27	81	5	74	23	12	23	39	1.89
32577652--32578291	27	24.2	27	72	13	168	18	18	19	42	1.89
32577817--32578291	27	17.6	27	78	6	275	18	18	20	42	1.90
32577816--32578291	54	8.8	53	80	7	392	19	18	19	42	1.90
32577794--32578291	81	6.2	80	77	7	368	19	18	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32582588--32582691	39	2.6	41	92	6	153	31	15	17	35	1.91
32582602--32582691	39	2.3	39	98	0	171	31	17	15	35	1.92
32582704--32582758	16	3.4	16	74	18	60	23	30	0	45	1.53
32582701--32582775	32	2.3	32	97	0	141	25	29	0	45	1.54
32582720--32582774	16	3.4	16	72	18	60	23	30	0	45	1.53
32586703--32586730	1	28.0	1	100	0	56	100	0	0	0	0.00
32587596--32587620	1	25.0	1	100	0	50	100	0	0	0	0.00
32587835--32587883	16	2.8	18	78	15	57	59	4	0	36	1.17
32587871--32587895	7	3.6	7	100	0	50	64	12	0	24	1.27
32590808--32590868	22	2.8	22	87	0	86	31	34	14	19	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145