genome.fa.s2.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  119  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39758175--39758391	27	8.1	26	81	7	229	17	18	23	40	1.91
39758175--39758389	80	2.7	80	84	5	272	17	19	23	40	1.92
39758175--39758391	54	4.0	53	83	4	265	17	18	23	40	1.91
39772994--39773108	27	4.3	26	77	10	97	40	22	15	20	1.90
39773457--39773530	28	2.6	28	91	0	121	21	21	25	31	1.98
39777271--39777335	32	2.1	32	97	2	123	30	9	12	47	1.72
39790398--39790439	21	2.0	21	90	4	68	35	21	14	28	1.92
39802296--39802334	16	2.5	15	80	8	51	51	5	5	38	1.46
39802555--39802598	23	2.0	23	90	4	72	22	22	15	38	1.92
39805486--39805714	29	7.9	29	73	7	178	36	14	27	21	1.92
39805486--39805714	87	2.6	87	83	4	293	36	14	27	21	1.92
39813097--39813181	42	2.0	42	97	0	161	40	14	17	28	1.88
39818438--39818499	30	2.1	30	90	0	97	50	8	8	33	1.61
39818556--39818596	7	5.9	7	100	0	82	58	12	0	29	1.34
39819284--39819351	32	2.1	32	97	0	127	8	30	19	41	1.82
39821725--39821839	43	2.7	41	81	6	131	33	27	18	20	1.96
39821687--39821836	42	3.6	43	76	8	139	32	25	19	22	1.97
39821816--39821866	26	2.0	26	96	0	93	27	35	19	17	1.94
39821839--39821948	41	2.7	41	92	0	175	23	26	20	30	1.98
39822823--39822973	42	3.6	42	76	13	159	34	24	17	23	1.96
39822950--39823002	26	2.0	26	89	7	81	26	33	22	16	1.96
39822976--39823085	41	2.7	41	89	0	175	23	25	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39823133--39823176	19	2.3	19	84	7	54	34	18	0	47	1.49
39837281--39837313	15	2.1	16	88	5	50	33	21	3	42	1.68
39838373--39838417	17	2.6	17	85	0	63	31	8	22	37	1.85
39839982--39840113	58	2.3	57	82	10	144	39	6	4	50	1.48
39840600--39840644	22	2.0	22	91	0	72	15	20	24	40	1.91
39848686--39848988	151	2.0	151	91	1	491	32	15	20	32	1.93
39850575--39850612	20	1.9	20	88	0	58	21	18	34	26	1.96
39850575--39850623	20	2.5	20	80	6	55	22	18	36	22	1.95
39850878--39850958	27	3.0	27	90	0	135	43	23	16	17	1.88
39850965--39851040	27	2.8	26	82	7	73	39	17	18	25	1.91
39853913--39853975	26	2.4	26	78	5	74	14	20	23	41	1.89
39857880--39857917	17	2.2	18	85	4	51	50	5	0	44	1.24
39861119--39861215	1	97.0	1	81	0	113	90	9	0	0	0.45
39863568--39863769	46	4.4	46	80	4	212	19	17	14	48	1.81
39863559--39863769	91	2.3	91	86	3	282	18	18	15	47	1.82
39863607--39863814	91	2.3	90	83	3	247	21	17	14	46	1.83
39863741--39863866	45	2.8	45	85	0	162	21	20	18	39	1.92
39877838--39877888	24	2.1	24	85	0	66	23	13	21	41	1.89
39882182--39882235	18	3.0	17	84	10	72	40	0	22	37	1.54
39894439--39894478	20	2.1	18	86	9	53	65	10	0	25	1.24
39896399--39896436	19	2.0	19	100	0	76	21	10	26	42	1.85
39898294--39898327	15	2.2	16	89	5	52	47	5	8	38	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39899778--39899829	15	3.5	15	71	10	52	13	13	42	30	1.83
39899777--39899834	30	1.9	30	96	0	107	17	17	37	27	1.92
39902237--39902279	20	2.2	20	86	0	59	44	20	9	25	1.81
39903314--39903412	42	2.4	42	87	0	135	28	26	9	36	1.87
39905764--39905826	10	6.4	10	77	14	51	31	1	0	66	1.01
39905743--39905858	40	2.9	41	88	8	184	35	3	0	60	1.20
39905783--39905849	11	6.4	11	75	18	63	37	2	0	59	1.13
39905832--39905871	21	1.9	21	89	0	62	37	2	0	60	1.11
39905831--39905885	21	2.5	20	80	13	56	38	1	3	56	1.28
39906368--39906430	22	2.9	20	77	11	63	47	17	17	17	1.83
39906422--39906528	32	3.4	32	85	3	146	41	19	17	21	1.91
39906531--39906584	26	2.1	26	92	0	90	33	27	22	16	1.95
39906572--39906636	27	2.5	26	83	14	80	32	26	24	16	1.96
39906709--39906751	11	3.7	11	76	11	50	51	25	6	16	1.69
39906702--39906774	24	3.0	24	87	0	101	47	23	9	19	1.78
39906713--39906831	24	5.0	24	83	2	141	44	21	8	25	1.80
39906850--39907146	27	11.4	27	81	6	263	24	21	18	35	1.96
39906850--39907128	54	5.3	53	80	10	306	24	22	19	33	1.97
39906850--39907128	81	3.6	81	79	8	324	24	22	19	33	1.97
39906959--39907101	72	2.0	72	88	0	214	25	22	16	34	1.95
39906933--39907126	99	2.0	99	91	0	316	25	22	17	35	1.95
39912789--39912842	19	2.8	20	83	10	78	46	5	29	18	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39913431--39914191	386	2.0	385	95	0	1371	32	20	14	32	1.93
39924534--39924754	111	2.0	111	91	0	361	33	16	16	34	1.91
39926967--39927400	44	9.9	44	87	0	553	24	23	20	30	1.98
39939296--39939516	111	2.0	111	90	0	352	32	14	17	35	1.90
39941120--39941152	17	1.9	17	88	11	50	18	0	6	75	1.00
39941667--39941738	36	2.0	36	100	0	144	13	22	16	47	1.82
39941671--39941750	36	2.2	36	88	4	117	16	23	15	45	1.85
39948377--39948416	21	1.9	21	84	0	53	35	2	5	57	1.34
39948696--39948754	20	2.8	20	77	10	57	62	1	0	35	1.05
39962398--39962431	16	2.2	15	89	5	50	55	0	0	44	0.99
39985511--39985771	70	3.7	69	78	5	229	38	22	17	21	1.93
40003778--40003806	14	2.0	15	93	6	51	24	13	0	62	1.32
40018887--40018927	21	2.0	21	90	0	64	19	21	12	46	1.82
40019915--40019949	13	2.6	14	86	9	54	51	14	11	22	1.74
40023446--40023476	16	1.9	16	93	0	53	41	9	0	48	1.36
40035147--40035213	20	3.3	20	78	11	75	14	28	16	40	1.88
40035157--40035222	20	3.3	20	72	16	64	16	30	16	36	1.91
40036377--40036419	21	2.0	22	81	4	52	20	9	13	55	1.66
40044138--40044421	23	12.6	23	78	13	304	28	0	26	45	1.57
40044138--40044300	67	2.4	67	94	0	299	25	0	27	46	1.53
40044176--40044413	90	2.6	90	94	0	413	27	0	26	45	1.57
40044452--40044489	9	4.3	9	93	3	60	60	7	0	31	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40044491--40044607	25	4.9	25	68	23	99	46	13	0	40	1.44
40044553--40044619	25	2.5	26	71	11	64	49	10	0	40	1.37
40045036--40045075	18	2.2	18	95	0	71	40	7	30	22	1.81
40047362--40047391	13	2.3	13	94	0	51	10	6	0	83	0.81
40048816--40048850	17	2.1	17	89	10	54	20	2	5	71	1.19
40057587--40057648	13	4.8	13	95	0	115	24	8	27	40	1.83
40058902--40058950	20	2.5	19	77	6	53	65	6	12	16	1.45
40061183--40061251	26	2.5	27	81	6	77	40	14	1	43	1.54
40072613--40072661	22	2.2	22	92	0	80	34	4	24	36	1.75
40074564--40074598	17	2.1	16	94	5	61	28	11	5	54	1.59
40080056--40080130	34	2.2	34	81	11	84	4	5	25	65	1.31
40080369--40080408	13	3.1	13	81	0	53	60	2	0	37	1.11
40084402--40084595	51	4.2	44	75	19	155	31	15	22	30	1.95
40084408--40084559	51	3.0	51	88	1	234	32	15	22	29	1.94
40084521--40084595	39	1.9	39	100	0	150	28	16	22	33	1.95
40089048--40089127	25	3.2	25	75	10	83	31	20	26	22	1.98
40089140--40089233	24	3.9	24	86	6	118	32	21	27	18	1.96
40089161--40089256	49	1.9	50	85	6	133	32	20	29	17	1.96
40089142--40089313	25	7.0	25	76	5	118	34	19	26	19	1.96
40089709--40090902	597	2.0	597	100	0	2388	39	12	7	40	1.71
40091623--40091695	30	2.5	30	80	12	80	10	4	4	80	0.98
40091620--40091686	34	2.0	32	83	16	84	10	5	2	80	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40091699--40091724	13	2.0	13	100	0	52	38	0	7	53	1.30
40091692--40091766	22	3.3	22	78	10	80	40	0	2	57	1.13
40091726--40091775	22	2.3	22	79	3	57	42	2	2	54	1.23
40096962--40097001	18	2.2	18	100	0	80	67	10	0	22	1.20
40097310--40097352	10	4.1	10	82	8	50	13	9	0	76	1.01
40097310--40097352	21	2.0	21	90	0	68	13	9	0	76	1.01
40097561--40097706	19	7.8	19	65	24	62	76	4	9	8	1.14
40097557--40097700	34	4.4	34	79	11	176	77	5	8	9	1.13
40097550--40097700	11	12.9	11	68	23	53	76	5	7	9	1.14
40097554--40097741	62	3.1	59	84	9	216	75	5	9	9	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145