genome.fa.s2.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  36  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11541518--11541865	131	2.7	131	93	0	579	31	19	23	25	1.98
11541670--11542247	44	13.1	43	66	17	179	30	19	23	26	1.98
11541695--11541984	87	3.3	87	68	17	238	29	20	24	25	1.99
11541817--11541911	47	2.0	48	97	2	183	32	18	25	23	1.97
11541686--11542040	178	2.0	179	92	1	597	30	19	24	25	1.98
11541738--11542034	87	3.4	87	70	18	238	29	19	23	26	1.98
11541865--11542170	131	2.3	130	92	2	499	29	19	24	26	1.99
11541555--11542170	309	2.0	310	91	2	1006	30	19	23	25	1.98
11542140--11542292	44	3.5	43	71	7	137	28	24	23	24	2.00
11542096--11542319	88	2.6	86	84	7	281	28	21	22	27	1.99
11542306--11542869	97	5.8	96	85	4	658	33	20	18	26	1.96
11542307--11542869	195	2.9	193	83	5	694	33	20	18	26	1.96
11544483--11544512	15	2.0	15	93	0	51	26	6	10	56	1.57
11552137--11552182	18	2.5	19	76	16	51	28	4	0	67	1.10
11557233--11557377	68	2.1	68	83	5	186	19	22	22	35	1.96
11557231--11557377	34	4.3	34	77	10	165	19	22	23	35	1.96
11559998--11560056	12	5.0	12	76	17	52	38	0	1	59	1.08
11560025--11560068	12	3.8	12	84	3	54	40	0	4	54	1.21
11559990--11560043	24	2.3	23	81	15	65	35	0	1	62	1.06
11560001--11560068	35	1.9	35	82	5	84	39	0	4	55	1.20
11567394--11567445	24	2.2	24	92	0	86	51	9	1	36	1.46
11569070--11569118	23	2.1	23	96	0	89	16	20	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11571641--11571811	85	2.0	85	90	0	270	53	12	15	19	1.73
11579052--11579207	45	3.5	45	86	3	188	23	19	15	41	1.89
11580124--11580556	214	2.0	214	97	0	812	39	15	7	38	1.75
11587483--11587528	3	15.3	3	95	0	65	39	34	0	26	1.57
11596085--11596121	18	2.0	18	89	5	56	37	0	2	59	1.12
11596347--11596617	92	3.0	92	91	4	419	34	17	10	37	1.85
11596768--11596822	20	2.7	21	83	10	62	60	0	1	38	1.08
11599953--11599992	15	2.9	14	82	10	55	0	15	0	85	0.61
11602551--11602577	6	4.5	6	100	0	54	29	0	14	55	1.40
11602545--11602579	12	2.8	13	87	12	56	31	0	11	57	1.34
11602595--11602640	9	5.3	9	84	5	60	21	0	0	78	0.76
11602574--11602634	27	2.3	27	83	11	72	29	0	1	68	0.99
11606472--11608835	396	6.0	396	98	0	4524	38	16	16	27	1.90
11620533--11620732	99	2.0	100	99	0	393	38	13	14	34	1.85
11620910--11620966	19	2.9	19	84	5	69	36	10	14	38	1.80
11620910--11621076	17	9.2	19	75	9	75	39	11	13	35	1.81
11620999--11621058	19	3.2	19	85	7	77	35	10	16	38	1.82
11620891--11621075	36	5.2	36	70	11	112	40	11	12	35	1.80
11620965--11621060	18	5.3	18	74	12	63	42	11	12	33	1.79
11621405--11621429	12	2.1	12	100	0	50	40	36	8	16	1.77
11621488--11621527	17	2.4	17	86	0	53	75	0	0	25	0.81
11621666--11621705	12	3.5	11	93	6	62	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11621666--11621707	13	3.5	12	87	9	59	0	19	0	80	0.70
11621842--11621881	18	2.3	17	86	4	53	2	15	5	77	1.04
11621858--11621884	14	1.9	14	100	0	54	3	14	7	74	1.18
11622562--11622688	30	4.2	29	73	6	101	40	4	19	34	1.73
11622562--11622689	31	4.3	31	73	5	111	40	4	19	35	1.73
11622875--11624313	75	18.6	75	81	11	1352	33	21	16	28	1.95
11623528--11623700	87	2.0	87	81	8	201	30	19	18	31	1.96
11622844--11624313	156	9.5	152	82	8	1341	33	21	16	28	1.95
11628567--11628596	15	1.9	16	93	6	53	16	13	36	33	1.88
11630065--11630099	4	9.0	4	87	6	54	48	0	22	28	1.51
11631761--11631909	17	8.3	18	76	10	83	40	11	13	34	1.80
11631761--11631818	18	3.1	19	85	7	66	36	10	13	39	1.79
11632484--11632510	14	1.9	14	100	0	54	0	14	11	74	1.08
11632611--11632662	4	12.5	4	78	13	52	0	23	0	76	0.78
11632608--11632665	11	5.2	11	79	10	64	0	22	0	77	0.77
11632751--11632802	18	2.8	19	80	11	54	0	40	0	59	0.97
11633202--11633319	61	2.0	59	89	3	182	40	2	22	34	1.67
11633210--11633319	31	3.7	30	79	8	134	40	2	22	34	1.69
11637741--11637803	28	2.2	28	80	0	72	25	15	25	33	1.95
11642368--11642435	15	4.2	16	73	12	68	73	4	19	2	1.13
11642371--11642447	16	4.8	16	76	12	52	70	3	23	2	1.17
11642499--11642536	18	2.1	19	85	5	51	71	7	13	7	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11642491--11642545	20	2.8	20	76	15	62	70	7	14	7	1.31
11642366--11642610	122	2.0	123	91	0	393	58	6	21	13	1.57
11644188--11644230	15	2.7	16	82	17	54	62	11	4	20	1.46
11646269--11646782	44	11.3	45	71	14	297	27	24	19	29	1.98
11646585--11646745	50	3.3	50	78	13	219	26	29	19	23	1.98
11646544--11646782	94	2.5	94	95	0	424	25	26	20	26	1.99
11646876--11647018	51	2.8	50	81	5	171	25	23	18	32	1.97
11646936--11647090	72	2.2	72	80	1	168	27	25	12	35	1.91
11647007--11647121	51	2.2	51	84	1	140	28	26	14	29	1.95
11646885--11647124	123	2.0	122	83	0	300	26	25	16	31	1.96
11649589--11649749	42	3.8	42	90	0	250	27	29	11	30	1.92
11649647--11649717	21	3.4	21	67	21	67	29	22	12	35	1.91
11649861--11649914	17	3.2	17	73	17	58	20	0	9	70	1.14
11654719--11654761	15	2.7	16	82	17	54	62	11	4	20	1.46
11655945--11655970	7	3.7	7	100	0	52	88	0	0	11	0.52
11666210--11666250	19	2.2	19	86	0	55	46	14	19	19	1.84
11666887--11666916	13	2.3	13	94	0	51	43	0	0	56	0.99
11669932--11670091	58	2.8	58	71	9	146	36	11	25	25	1.90
11669932--11670122	29	6.6	29	72	6	118	36	12	26	25	1.91
11674576--11674627	24	2.2	24	85	0	68	51	7	5	34	1.54
11675460--11675891	23	18.5	23	69	14	269	42	18	13	24	1.87
11675441--11675703	70	3.7	69	86	5	357	42	19	13	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11675493--11675797	95	3.2	94	78	12	340	41	19	13	25	1.88
11675550--11675867	165	1.9	164	97	0	600	42	18	13	24	1.87
11675715--11675900	70	2.6	70	96	0	336	43	19	12	24	1.86
11675612--11675890	95	3.0	95	81	8	299	44	18	13	24	1.85
11679552--11679597	24	1.9	24	86	0	65	50	6	4	39	1.48
11680398--11680451	22	2.5	22	78	6	56	44	5	1	48	1.37
11680443--11680496	20	2.6	21	85	8	67	68	1	3	25	1.16
11683843--11683868	7	3.7	7	100	0	52	88	0	0	11	0.52
11683868--11683944	9	8.4	9	83	8	75	23	10	23	42	1.84
11685647--11685684	19	2.0	19	100	0	76	36	0	21	42	1.53
11685880--11685923	3	15.0	3	90	4	72	65	0	2	31	1.05
11686346--11686396	23	2.2	23	82	0	57	39	17	17	25	1.92
11690341--11690684	181	1.9	185	83	8	461	31	16	14	38	1.88
11695598--11695640	14	3.0	15	80	10	54	55	0	0	44	0.99
11697007--11697054	20	2.2	23	78	14	57	35	2	2	60	1.20
11697951--11698008	29	2.0	29	96	0	107	44	8	6	39	1.62
11699166--11699227	32	1.9	32	96	0	115	38	0	30	30	1.58
11704619--11704789	40	4.3	40	89	0	261	15	20	30	33	1.93
11709370--11710383	336	3.0	336	94	0	1758	31	22	15	29	1.95
11718092--11718117	5	5.2	5	100	0	52	19	0	0	80	0.71
11718829--11718950	41	3.0	40	71	7	109	23	27	26	22	2.00
11718793--11718968	83	2.1	83	83	5	214	25	27	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11722121--11722179	29	2.0	29	96	0	109	42	22	16	18	1.89
11728716--11729079	69	5.2	68	78	9	340	60	1	7	29	1.34
11728842--11728886	21	2.3	21	85	11	60	68	0	8	22	1.16
11728858--11729026	71	2.3	75	76	14	186	61	1	5	30	1.30
11728926--11728964	20	1.9	20	89	5	60	66	0	5	28	1.12
11728716--11729131	140	3.1	139	79	10	421	60	2	7	29	1.37
11730672--11730928	44	6.0	44	77	5	201	29	20	17	32	1.95
11730678--11730895	88	2.5	88	81	0	249	29	20	16	33	1.95
11735093--11735149	30	1.9	30	96	0	105	47	14	12	26	1.79
11735692--11735757	33	2.0	33	93	0	114	33	24	18	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145