genome.fa.s2.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  107  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35940257--35940301	15	3.2	14	85	14	58	73	0	6	20	1.05
35944502--35944618	58	1.9	59	83	6	146	41	3	5	50	1.41
35948742--35948806	9	7.2	9	79	10	71	40	20	10	29	1.86
35948742--35948806	27	2.4	27	82	10	87	40	20	10	29	1.86
35948813--35948866	26	2.1	26	86	6	74	35	25	22	16	1.95
35948924--35948970	25	1.9	25	86	4	69	42	19	19	19	1.89
35949227--35949273	25	1.9	25	86	4	69	19	19	19	42	1.89
35949236--35949285	24	2.0	25	85	11	68	18	24	22	36	1.95
35949331--35949391	26	2.3	26	88	5	88	16	24	24	34	1.95
35949348--35949403	26	2.2	26	90	0	85	17	21	23	37	1.94
35949383--35949540	74	2.2	73	81	6	194	20	22	18	37	1.94
35949359--35949487	25	5.2	25	67	18	72	21	22	19	36	1.95
35952132--35952174	20	2.0	20	82	13	50	34	6	4	53	1.49
35984258--35984369	56	2.0	56	98	0	215	22	7	16	54	1.66
35985906--35985959	16	3.4	16	92	0	90	27	35	1	35	1.68
35985938--35986182	121	2.0	122	99	0	483	29	19	15	35	1.93
36014735--36014775	3	13.7	3	100	0	82	68	0	0	31	0.90
36018765--36018796	2	17.0	2	87	12	50	0	46	0	53	1.00
36024010--36024226	68	3.0	68	84	6	254	38	12	18	30	1.88
36024078--36024233	78	2.0	78	92	2	260	36	12	20	30	1.90
36027355--36027424	35	2.0	36	88	2	106	30	10	22	37	1.87
36034592--36034662	36	2.0	36	88	0	106	38	2	21	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36035836--36035873	19	2.0	19	85	10	51	42	0	15	42	1.47
36036362--36036391	14	2.1	14	100	0	60	73	0	6	20	1.05
36037122--36037161	19	2.1	19	90	0	62	55	0	12	32	1.38
36037354--36037461	23	4.9	23	75	10	91	20	19	24	36	1.95
36037364--36037449	21	3.9	23	77	8	90	16	20	25	37	1.93
36038391--36038422	13	2.5	13	94	0	55	43	12	28	15	1.83
36040581--36040654	37	2.0	37	91	0	121	47	12	18	21	1.81
36050006--36050037	15	2.1	15	94	0	55	68	9	6	15	1.36
36052436--36052482	18	2.6	18	82	0	58	46	4	36	12	1.62
36063189--36063573	197	2.0	197	99	0	761	40	6	9	43	1.62
36069687--36069893	102	2.0	103	99	0	407	41	7	5	45	1.57
36072296--36072341	20	2.2	22	84	7	60	54	2	2	41	1.25
36076285--36076327	16	2.7	15	85	7	50	48	11	2	37	1.52
36076435--36076551	42	2.8	41	87	2	171	36	19	17	25	1.94
36076435--36076558	41	3.0	41	86	2	176	35	20	18	25	1.95
36076942--36076993	21	2.5	21	90	0	77	5	46	17	30	1.71
36078970--36079530	9	62.7	9	71	15	348	33	1	18	45	1.61
36079051--36079089	19	2.1	19	85	9	53	30	0	17	51	1.46
36079330--36079424	12	7.6	12	72	21	79	29	2	22	46	1.63
36079515--36079607	38	2.4	39	90	1	152	44	1	11	43	1.48
36079583--36079630	23	2.1	23	96	0	87	39	0	16	43	1.48
36079661--36079712	13	4.0	13	77	5	52	46	3	7	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36079742--36079793	18	2.8	19	83	11	63	57	1	1	38	1.21
36085786--36085813	5	5.6	5	100	0	56	60	0	0	39	0.97
36085771--36085813	15	2.8	15	86	10	52	60	2	0	37	1.10
36088025--36088082	29	2.0	29	86	6	82	32	8	15	43	1.77
36088249--36089003	114	6.6	113	91	2	1003	33	22	21	22	1.97
36089525--36089568	21	2.1	21	83	8	54	25	0	36	38	1.56
36089665--36089722	23	2.6	23	81	8	66	24	0	32	43	1.55
36090245--36090608	190	1.9	191	85	1	498	20	23	13	41	1.88
36102643--36102757	42	2.7	43	73	1	115	33	19	19	27	1.96
36102733--36102848	42	2.5	48	77	20	145	25	21	19	33	1.97
36102759--36102859	42	2.4	42	93	0	166	22	20	19	36	1.95
36103979--36104191	107	2.0	104	86	6	295	27	11	11	49	1.72
36103895--36104548	237	2.6	249	84	8	793	27	12	12	46	1.79
36105563--36106003	114	3.9	113	86	2	607	25	25	22	26	2.00
36105563--36106003	227	1.9	227	87	1	634	25	25	22	26	2.00
36105904--36106074	72	2.4	72	87	2	236	23	25	25	26	2.00
36144359--36144400	18	2.3	18	87	0	57	28	14	26	30	1.95
36145102--36145268	49	3.4	49	83	3	201	33	22	13	29	1.93
36146443--36147074	133	4.7	134	80	3	668	33	17	12	37	1.86
36147212--36147290	36	2.2	36	82	6	90	32	16	11	39	1.84
36147169--36147424	134	1.9	134	83	1	334	32	16	11	39	1.85
36147193--36147637	243	1.8	243	83	2	599	31	17	11	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36147603--36147709	54	2.0	54	96	0	196	28	25	8	37	1.85
36149455--36149652	71	2.8	70	82	6	204	25	16	26	31	1.97
36153221--36153250	15	2.0	15	93	0	51	56	23	6	13	1.60
36171151--36171235	36	2.4	36	82	7	95	32	21	10	35	1.88
36171110--36171654	133	4.1	134	80	4	580	33	18	11	37	1.86
36171356--36171557	63	3.1	63	66	19	151	30	17	14	36	1.91
36171110--36171654	267	2.0	267	83	2	684	33	18	11	37	1.86
36171650--36171909	134	1.9	134	84	3	344	31	16	11	39	1.86
36178287--36178344	27	2.2	27	84	9	75	34	0	1	63	1.04
36183609--36183740	64	2.1	64	100	0	264	33	18	18	29	1.95
36206440--36206745	153	2.0	153	95	0	549	28	6	33	32	1.83
36207328--36207608	27	10.5	27	83	1	325	34	19	22	23	1.96
36207654--36207711	24	2.4	25	85	5	75	20	5	25	48	1.70
36207883--36208213	32	10.4	32	77	5	269	21	20	20	36	1.95
36210008--36210057	23	2.2	23	92	0	82	54	10	12	24	1.67
36216768--36216802	17	2.1	17	94	0	61	42	25	11	20	1.85
36218868--36218910	18	2.4	18	100	0	86	27	0	37	34	1.57
36218868--36218910	9	4.8	9	76	0	50	27	0	37	34	1.57
36220716--36220763	24	2.0	24	91	0	78	35	2	6	56	1.36
36223423--36223465	22	2.0	22	90	0	68	16	9	34	39	1.80
36223749--36224107	44	8.2	44	87	2	425	26	24	19	29	1.99
36223749--36224107	132	2.7	132	84	0	484	26	24	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36225180--36225272	42	2.2	42	92	0	159	27	34	11	25	1.91
36237918--36237960	22	2.0	22	95	0	77	18	9	32	39	1.83
36244744--36244780	18	2.0	19	89	5	58	54	2	5	37	1.38
36253228--36253270	20	2.1	20	86	4	59	72	4	11	11	1.27
36254365--36254393	14	2.0	15	93	6	51	13	10	0	75	1.04
36256118--36256421	24	12.7	24	79	2	279	17	9	38	34	1.82
36256191--36256422	119	1.9	120	84	2	306	18	9	37	34	1.83
36256098--36256421	72	4.5	71	80	4	335	18	8	37	34	1.82
36257050--36257122	23	3.2	23	71	7	67	23	20	17	38	1.93
36257042--36257163	46	2.7	46	77	0	127	24	20	14	40	1.90
36264958--36265061	41	2.5	42	85	3	131	30	19	19	30	1.96
36266652--36266677	13	2.0	13	100	0	52	61	23	0	15	1.33
36274214--36274275	29	2.1	29	82	5	72	43	17	19	19	1.88
36278034--36278107	22	3.4	22	83	3	96	25	18	20	35	1.96
36292581--36292690	3	36.3	3	85	8	143	72	0	27	0	0.85
36292581--36292695	33	3.6	33	93	6	186	73	0	26	0	0.83
36292967--36293065	47	2.1	47	86	0	144	28	5	21	45	1.72
36292973--36293095	47	2.7	44	79	9	131	29	5	23	41	1.77
36292967--36293103	47	3.0	45	81	11	129	27	5	24	43	1.75
36297274--36297305	15	2.2	15	94	5	57	31	3	0	65	1.08
36300465--36300506	17	2.5	17	88	7	59	16	7	2	73	1.15
36300982--36301023	21	2.0	21	85	0	57	11	14	40	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36307436--36307466	15	2.1	15	100	0	62	51	6	16	25	1.68
36315854--36315911	27	2.2	27	79	11	66	34	1	5	58	1.30
36328102--36328154	3	17.7	3	100	0	106	32	0	0	67	0.91
36335017--36335133	37	3.0	40	77	8	123	35	21	16	27	1.94
36335675--36335710	18	1.9	19	88	5	56	33	27	0	38	1.57
36335992--36336042	26	2.0	26	84	7	68	1	23	3	70	1.14
36336058--36336136	27	2.8	31	74	20	82	48	2	2	46	1.29
36344534--36344653	60	2.0	60	96	0	222	43	16	19	20	1.88
36346524--36346552	14	2.1	14	93	6	51	51	24	0	24	1.48
36347181--36347302	44	2.8	44	79	2	156	36	25	17	20	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145